data_5ZQP
#
_model_server_result.job_id            0iAXZhHwBjxSdJZJDij5MQ 
_model_server_result.datetime_utc      '2024-11-19 23:01:01' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5zqp 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":1204}' 
#
_entry.id    5ZQP 
#
_exptl.entry_id    5ZQP 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          6 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5ZQP 
_cell.length_a            67.405 
_cell.length_b            67.405 
_cell.length_c            115.092 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5ZQP 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        92 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 41 21 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 6 F N N 
? 6 G N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A SG CYS 135 A CYS 1081 1_555 C ZN ZN . A ZN 1201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.282 ? 
metalc ? metalc2 A ND1 HIS 138 A HIS 1084 1_555 C ZN ZN . A ZN 1201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.168 ? 
metalc ? metalc3 A SG CYS 143 A CYS 1089 1_555 C ZN ZN . A ZN 1201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.278 ? 
metalc ? metalc4 A SG CYS 146 A CYS 1092 1_555 C ZN ZN . A ZN 1201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.323 ? 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 180 n n 
C1 C2 GOL sing 181 n n 
C1 H11 GOL sing 182 n n 
C1 H12 GOL sing 183 n n 
O1 HO1 GOL sing 184 n n 
C2 O2 GOL sing 185 n n 
C2 C3 GOL sing 186 n n 
C2 H2 GOL sing 187 n n 
O2 HO2 GOL sing 188 n n 
C3 O3 GOL sing 189 n n 
C3 H31 GOL sing 190 n n 
C3 H32 GOL sing 191 n n 
O3 HO3 GOL sing 192 n n 
#
_atom_sites.entry_id                     5ZQP 
_atom_sites.fract_transf_matrix[1][1]    0.014836 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.014836 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.008689 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 ZN A 1 1201 1201 ZN ZN . 
D 4 9H3 A 1 1202 1202 9H3 9H3 . 
E 5 PO4 A 1 1203 1203 PO4 PO4 . 
F 6 GOL A 1 1204 1204 GOL GOL . 
G 6 GOL B 1 1201 1205 GOL GOL . 
H 7 HOH A 1 1301 1301 HOH HOH . 
H 7 HOH A 2 1302 1303 HOH HOH . 
H 7 HOH A 3 1303 1304 HOH HOH . 
H 7 HOH A 4 1304 1305 HOH HOH . 
H 7 HOH A 5 1305 1306 HOH HOH . 
H 7 HOH A 6 1306 1308 HOH HOH . 
H 7 HOH A 7 1307 1310 HOH HOH . 
H 7 HOH A 8 1308 1311 HOH HOH . 
H 7 HOH A 9 1309 1312 HOH HOH . 
H 7 HOH A 10 1310 1314 HOH HOH . 
H 7 HOH A 11 1311 1315 HOH HOH . 
H 7 HOH A 12 1312 1316 HOH HOH . 
H 7 HOH A 13 1313 1318 HOH HOH . 
H 7 HOH A 14 1314 1320 HOH HOH . 
H 7 HOH A 15 1315 1321 HOH HOH . 
H 7 HOH A 16 1316 1322 HOH HOH . 
H 7 HOH A 17 1317 1324 HOH HOH . 
H 7 HOH A 18 1318 1326 HOH HOH . 
H 7 HOH A 19 1319 1328 HOH HOH . 
H 7 HOH A 20 1320 1329 HOH HOH . 
H 7 HOH A 21 1321 1330 HOH HOH . 
H 7 HOH A 22 1322 1331 HOH HOH . 
H 7 HOH A 23 1323 1332 HOH HOH . 
H 7 HOH A 24 1324 1333 HOH HOH . 
H 7 HOH A 25 1325 1334 HOH HOH . 
H 7 HOH A 26 1326 1335 HOH HOH . 
H 7 HOH A 27 1327 1336 HOH HOH . 
H 7 HOH A 28 1328 1339 HOH HOH . 
H 7 HOH A 29 1329 1340 HOH HOH . 
H 7 HOH A 30 1330 1341 HOH HOH . 
H 7 HOH A 31 1331 1342 HOH HOH . 
H 7 HOH A 32 1332 1343 HOH HOH . 
H 7 HOH A 33 1333 1345 HOH HOH . 
H 7 HOH A 34 1334 1347 HOH HOH . 
H 7 HOH A 35 1335 1348 HOH HOH . 
H 7 HOH A 36 1336 1350 HOH HOH . 
H 7 HOH A 37 1337 1351 HOH HOH . 
H 7 HOH A 38 1338 1352 HOH HOH . 
H 7 HOH A 39 1339 1353 HOH HOH . 
H 7 HOH A 40 1340 1354 HOH HOH . 
H 7 HOH A 41 1341 1357 HOH HOH . 
H 7 HOH A 42 1342 1358 HOH HOH . 
H 7 HOH A 43 1343 1360 HOH HOH . 
H 7 HOH A 44 1344 1361 HOH HOH . 
H 7 HOH A 45 1345 1362 HOH HOH . 
H 7 HOH A 46 1346 1363 HOH HOH . 
H 7 HOH A 47 1347 1364 HOH HOH . 
H 7 HOH A 48 1348 1365 HOH HOH . 
H 7 HOH A 49 1349 1366 HOH HOH . 
H 7 HOH A 50 1350 1367 HOH HOH . 
H 7 HOH A 51 1351 1368 HOH HOH . 
H 7 HOH A 52 1352 1369 HOH HOH . 
H 7 HOH A 53 1353 1370 HOH HOH . 
H 7 HOH A 54 1354 1372 HOH HOH . 
H 7 HOH A 55 1355 1373 HOH HOH . 
H 7 HOH A 56 1356 1374 HOH HOH . 
H 7 HOH A 57 1357 1376 HOH HOH . 
H 7 HOH A 58 1358 1377 HOH HOH . 
H 7 HOH A 59 1359 1378 HOH HOH . 
H 7 HOH A 60 1360 1379 HOH HOH . 
H 7 HOH A 61 1361 1380 HOH HOH . 
H 7 HOH A 62 1362 1381 HOH HOH . 
H 7 HOH A 63 1363 1382 HOH HOH . 
H 7 HOH A 64 1364 1383 HOH HOH . 
H 7 HOH A 65 1365 1384 HOH HOH . 
H 7 HOH A 66 1366 1385 HOH HOH . 
H 7 HOH A 67 1367 1386 HOH HOH . 
H 7 HOH A 68 1368 1387 HOH HOH . 
H 7 HOH A 69 1369 1388 HOH HOH . 
H 7 HOH A 70 1370 1389 HOH HOH . 
H 7 HOH A 71 1371 1390 HOH HOH . 
H 7 HOH A 72 1372 1391 HOH HOH . 
H 7 HOH A 73 1373 1392 HOH HOH . 
H 7 HOH A 74 1374 1393 HOH HOH . 
H 7 HOH A 75 1375 1394 HOH HOH . 
H 7 HOH A 76 1376 1395 HOH HOH . 
H 7 HOH A 77 1377 1396 HOH HOH . 
H 7 HOH A 78 1378 1397 HOH HOH . 
H 7 HOH A 79 1379 1398 HOH HOH . 
H 7 HOH A 80 1380 1399 HOH HOH . 
H 7 HOH A 81 1381 1400 HOH HOH . 
H 7 HOH A 82 1382 1401 HOH HOH . 
H 7 HOH A 83 1383 1402 HOH HOH . 
H 7 HOH A 84 1384 1403 HOH HOH . 
H 7 HOH A 85 1385 1404 HOH HOH . 
H 7 HOH A 86 1386 1405 HOH HOH . 
H 7 HOH A 87 1387 1406 HOH HOH . 
H 7 HOH A 88 1388 1407 HOH HOH . 
H 7 HOH A 89 1389 1408 HOH HOH . 
H 7 HOH A 90 1390 1410 HOH HOH . 
H 7 HOH A 91 1391 1411 HOH HOH . 
H 7 HOH A 92 1392 1412 HOH HOH . 
H 7 HOH A 93 1393 1414 HOH HOH . 
I 7 HOH B 1 1301 1302 HOH HOH . 
I 7 HOH B 2 1302 1307 HOH HOH . 
I 7 HOH B 3 1303 1309 HOH HOH . 
I 7 HOH B 4 1304 1313 HOH HOH . 
I 7 HOH B 5 1305 1317 HOH HOH . 
I 7 HOH B 6 1306 1319 HOH HOH . 
I 7 HOH B 7 1307 1323 HOH HOH . 
I 7 HOH B 8 1308 1325 HOH HOH . 
I 7 HOH B 9 1309 1327 HOH HOH . 
I 7 HOH B 10 1310 1337 HOH HOH . 
I 7 HOH B 11 1311 1338 HOH HOH . 
I 7 HOH B 12 1312 1344 HOH HOH . 
I 7 HOH B 13 1313 1346 HOH HOH . 
I 7 HOH B 14 1314 1349 HOH HOH . 
I 7 HOH B 15 1315 1355 HOH HOH . 
I 7 HOH B 16 1316 1356 HOH HOH . 
I 7 HOH B 17 1317 1359 HOH HOH . 
I 7 HOH B 18 1318 1371 HOH HOH . 
I 7 HOH B 19 1319 1375 HOH HOH . 
I 7 HOH B 20 1320 1409 HOH HOH . 
I 7 HOH B 21 1321 1413 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . F 6 9.495 -12.554 -12.703 1 47.5 ? C1 GOL 1204 A 1 
HETATM 2 O O1 GOL . . . F 6 10.804 -12.352 -12.287 1 48.95 ? O1 GOL 1204 A 1 
HETATM 3 C C2 GOL . . . F 6 9.506 -12.848 -14.222 1 55.28 ? C2 GOL 1204 A 1 
HETATM 4 O O2 GOL . . . F 6 9.928 -11.756 -14.977 1 58.72 ? O2 GOL 1204 A 1 
HETATM 5 C C3 GOL . . . F 6 10.38 -14.111 -14.422 1 60.26 ? C3 GOL 1204 A 1 
HETATM 6 O O3 GOL . . . F 6 10.108 -14.979 -13.36 1 64.99 ? O3 GOL 1204 A 1 
#
_model_server_stats.io_time_ms              42 
_model_server_stats.parse_time_ms           13 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           416 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           6 
#