data_5ZQR # _model_server_result.job_id D-ZZFlaMbTPUyHMpuveVgw _model_server_result.datetime_utc '2025-06-30 12:41:44' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5zqr # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":1202}' # _entry.id 5ZQR # _exptl.entry_id 5ZQR _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 416.464 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "2-[4,6-difluoro-1-(2-hydroxyethyl)-1,2-dihydro-1'H-spiro[indole-3,4'-piperidin]-1'-yl]-5,6,7,8-tetrahydroquinazolin-4(3H)-one" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5ZQR _cell.length_a 66.728 _cell.length_b 66.728 _cell.length_c 115.224 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5ZQR _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 135 A CYS 1081 1_555 C ZN ZN . A ZN 1201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.278 ? metalc ? metalc2 A ND1 HIS 138 A HIS 1084 1_555 C ZN ZN . A ZN 1201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.156 ? metalc ? metalc3 A SG CYS 143 A CYS 1089 1_555 C ZN ZN . A ZN 1201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.335 ? metalc ? metalc4 A SG CYS 146 A CYS 1092 1_555 C ZN ZN . A ZN 1201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.244 ? # _chem_comp.formula 'C22 H26 F2 N4 O2' _chem_comp.formula_weight 416.464 _chem_comp.id 9H9 _chem_comp.mon_nstd_flag . _chem_comp.name "2-[4,6-difluoro-1-(2-hydroxyethyl)-1,2-dihydro-1'H-spiro[indole-3,4'-piperidin]-1'-yl]-5,6,7,8-tetrahydroquinazolin-4(3H)-one" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C30 C01 9H9 sing 1 n n C30 C29 9H9 sing 2 n n C01 C02 9H9 sing 3 n n C29 C28 9H9 sing 4 n n O04 C03 9H9 doub 5 n n C02 C03 9H9 sing 6 n n C02 C27 9H9 doub 7 n n C03 N05 9H9 sing 8 n n C28 C27 9H9 sing 9 n n C27 N26 9H9 sing 10 n n N05 C06 9H9 sing 11 n n N26 C06 9H9 doub 12 n n C06 N07 9H9 sing 13 n n N07 C08 9H9 sing 14 n n N07 C25 9H9 sing 15 n n C08 C09 9H9 sing 16 n n C25 C24 9H9 sing 17 n n C09 C10 9H9 sing 18 n n C24 C10 9H9 sing 19 n n C10 C23 9H9 sing 20 n n C10 C11 9H9 sing 21 n n C23 N19 9H9 sing 22 n n F13 C12 9H9 sing 23 n n C11 C12 9H9 doub 24 n y C11 C18 9H9 sing 25 n y C12 C14 9H9 sing 26 n y N19 C18 9H9 sing 27 n n N19 C20 9H9 sing 28 n n C18 C17 9H9 doub 29 n y O22 C21 9H9 sing 30 n n C20 C21 9H9 sing 31 n n C14 C15 9H9 doub 32 n y C17 C15 9H9 sing 33 n y C15 F16 9H9 sing 34 n n C14 H1 9H9 sing 35 n n C01 H2 9H9 sing 36 n n C01 H3 9H9 sing 37 n n C08 H4 9H9 sing 38 n n C08 H5 9H9 sing 39 n n C09 H6 9H9 sing 40 n n C09 H7 9H9 sing 41 n n C17 H8 9H9 sing 42 n n C20 H9 9H9 sing 43 n n C20 H10 9H9 sing 44 n n C21 H11 9H9 sing 45 n n C21 H12 9H9 sing 46 n n C23 H13 9H9 sing 47 n n C23 H14 9H9 sing 48 n n C24 H15 9H9 sing 49 n n C24 H16 9H9 sing 50 n n C25 H17 9H9 sing 51 n n C25 H18 9H9 sing 52 n n C28 H19 9H9 sing 53 n n C28 H20 9H9 sing 54 n n C29 H21 9H9 sing 55 n n C29 H22 9H9 sing 56 n n C30 H23 9H9 sing 57 n n C30 H24 9H9 sing 58 n n N05 H25 9H9 sing 59 n n O22 H26 9H9 sing 60 n n # _atom_sites.entry_id 5ZQR _atom_sites.fract_transf_matrix[1][1] 0.014986 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014986 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008679 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 ZN A 1 1201 1201 ZN ZN . D 4 9H9 A 1 1202 1202 9H9 9H9 . E 5 PO4 A 1 1203 1203 PO4 PO4 . F 6 GOL A 1 1204 1204 GOL GOL . G 6 GOL A 1 1205 1206 GOL GOL . H 6 GOL B 1 1201 1205 GOL GOL . I 7 HOH A 1 1301 1301 HOH HOH . I 7 HOH A 2 1302 1302 HOH HOH . I 7 HOH A 3 1303 1304 HOH HOH . I 7 HOH A 4 1304 1305 HOH HOH . I 7 HOH A 5 1305 1306 HOH HOH . I 7 HOH A 6 1306 1307 HOH HOH . I 7 HOH A 7 1307 1308 HOH HOH . I 7 HOH A 8 1308 1309 HOH HOH . I 7 HOH A 9 1309 1311 HOH HOH . I 7 HOH A 10 1310 1316 HOH HOH . I 7 HOH A 11 1311 1317 HOH HOH . I 7 HOH A 12 1312 1318 HOH HOH . I 7 HOH A 13 1313 1320 HOH HOH . I 7 HOH A 14 1314 1321 HOH HOH . I 7 HOH A 15 1315 1322 HOH HOH . I 7 HOH A 16 1316 1323 HOH HOH . I 7 HOH A 17 1317 1324 HOH HOH . I 7 HOH A 18 1318 1325 HOH HOH . I 7 HOH A 19 1319 1326 HOH HOH . I 7 HOH A 20 1320 1327 HOH HOH . I 7 HOH A 21 1321 1328 HOH HOH . I 7 HOH A 22 1322 1329 HOH HOH . I 7 HOH A 23 1323 1330 HOH HOH . I 7 HOH A 24 1324 1331 HOH HOH . I 7 HOH A 25 1325 1332 HOH HOH . I 7 HOH A 26 1326 1333 HOH HOH . I 7 HOH A 27 1327 1334 HOH HOH . I 7 HOH A 28 1328 1336 HOH HOH . I 7 HOH A 29 1329 1337 HOH HOH . I 7 HOH A 30 1330 1341 HOH HOH . I 7 HOH A 31 1331 1343 HOH HOH . I 7 HOH A 32 1332 1344 HOH HOH . I 7 HOH A 33 1333 1346 HOH HOH . I 7 HOH A 34 1334 1347 HOH HOH . I 7 HOH A 35 1335 1348 HOH HOH . I 7 HOH A 36 1336 1350 HOH HOH . I 7 HOH A 37 1337 1351 HOH HOH . I 7 HOH A 38 1338 1352 HOH HOH . I 7 HOH A 39 1339 1353 HOH HOH . I 7 HOH A 40 1340 1354 HOH HOH . I 7 HOH A 41 1341 1355 HOH HOH . I 7 HOH A 42 1342 1356 HOH HOH . I 7 HOH A 43 1343 1357 HOH HOH . I 7 HOH A 44 1344 1359 HOH HOH . I 7 HOH A 45 1345 1360 HOH HOH . I 7 HOH A 46 1346 1361 HOH HOH . I 7 HOH A 47 1347 1362 HOH HOH . I 7 HOH A 48 1348 1364 HOH HOH . I 7 HOH A 49 1349 1365 HOH HOH . I 7 HOH A 50 1350 1366 HOH HOH . I 7 HOH A 51 1351 1367 HOH HOH . I 7 HOH A 52 1352 1368 HOH HOH . I 7 HOH A 53 1353 1369 HOH HOH . I 7 HOH A 54 1354 1371 HOH HOH . I 7 HOH A 55 1355 1372 HOH HOH . I 7 HOH A 56 1356 1373 HOH HOH . I 7 HOH A 57 1357 1374 HOH HOH . I 7 HOH A 58 1358 1375 HOH HOH . I 7 HOH A 59 1359 1376 HOH HOH . I 7 HOH A 60 1360 1378 HOH HOH . I 7 HOH A 61 1361 1379 HOH HOH . I 7 HOH A 62 1362 1380 HOH HOH . I 7 HOH A 63 1363 1381 HOH HOH . I 7 HOH A 64 1364 1382 HOH HOH . I 7 HOH A 65 1365 1383 HOH HOH . I 7 HOH A 66 1366 1384 HOH HOH . I 7 HOH A 67 1367 1385 HOH HOH . I 7 HOH A 68 1368 1386 HOH HOH . I 7 HOH A 69 1369 1387 HOH HOH . I 7 HOH A 70 1370 1388 HOH HOH . I 7 HOH A 71 1371 1389 HOH HOH . I 7 HOH A 72 1372 1390 HOH HOH . I 7 HOH A 73 1373 1391 HOH HOH . I 7 HOH A 74 1374 1392 HOH HOH . I 7 HOH A 75 1375 1393 HOH HOH . I 7 HOH A 76 1376 1394 HOH HOH . I 7 HOH A 77 1377 1395 HOH HOH . I 7 HOH A 78 1378 1396 HOH HOH . I 7 HOH A 79 1379 1397 HOH HOH . I 7 HOH A 80 1380 1398 HOH HOH . I 7 HOH A 81 1381 1399 HOH HOH . I 7 HOH A 82 1382 1400 HOH HOH . I 7 HOH A 83 1383 1402 HOH HOH . I 7 HOH A 84 1384 1403 HOH HOH . I 7 HOH A 85 1385 1404 HOH HOH . I 7 HOH A 86 1386 1405 HOH HOH . I 7 HOH A 87 1387 1406 HOH HOH . I 7 HOH A 88 1388 1407 HOH HOH . I 7 HOH A 89 1389 1408 HOH HOH . I 7 HOH A 90 1390 1409 HOH HOH . I 7 HOH A 91 1391 1410 HOH HOH . I 7 HOH A 92 1392 1412 HOH HOH . I 7 HOH A 93 1393 1413 HOH HOH . I 7 HOH A 94 1394 1414 HOH HOH . I 7 HOH A 95 1395 1415 HOH HOH . I 7 HOH A 96 1396 1416 HOH HOH . I 7 HOH A 97 1397 1417 HOH HOH . I 7 HOH A 98 1398 1418 HOH HOH . I 7 HOH A 99 1399 1419 HOH HOH . I 7 HOH A 100 1400 1420 HOH HOH . I 7 HOH A 101 1401 1421 HOH HOH . I 7 HOH A 102 1402 1423 HOH HOH . I 7 HOH A 103 1403 1425 HOH HOH . I 7 HOH A 104 1404 1426 HOH HOH . I 7 HOH A 105 1405 1427 HOH HOH . I 7 HOH A 106 1406 1428 HOH HOH . I 7 HOH A 107 1407 1430 HOH HOH . I 7 HOH A 108 1408 1431 HOH HOH . I 7 HOH A 109 1409 1432 HOH HOH . I 7 HOH A 110 1410 1433 HOH HOH . I 7 HOH A 111 1411 1435 HOH HOH . I 7 HOH A 112 1412 1436 HOH HOH . I 7 HOH A 113 1413 1438 HOH HOH . I 7 HOH A 114 1414 1439 HOH HOH . I 7 HOH A 115 1415 1440 HOH HOH . I 7 HOH A 116 1416 1441 HOH HOH . J 7 HOH B 1 1301 1303 HOH HOH . J 7 HOH B 2 1302 1310 HOH HOH . J 7 HOH B 3 1303 1312 HOH HOH . J 7 HOH B 4 1304 1313 HOH HOH . J 7 HOH B 5 1305 1314 HOH HOH . J 7 HOH B 6 1306 1315 HOH HOH . J 7 HOH B 7 1307 1319 HOH HOH . J 7 HOH B 8 1308 1335 HOH HOH . J 7 HOH B 9 1309 1338 HOH HOH . J 7 HOH B 10 1310 1339 HOH HOH . J 7 HOH B 11 1311 1340 HOH HOH . J 7 HOH B 12 1312 1342 HOH HOH . J 7 HOH B 13 1313 1345 HOH HOH . J 7 HOH B 14 1314 1349 HOH HOH . J 7 HOH B 15 1315 1358 HOH HOH . J 7 HOH B 16 1316 1363 HOH HOH . J 7 HOH B 17 1317 1370 HOH HOH . J 7 HOH B 18 1318 1377 HOH HOH . J 7 HOH B 19 1319 1401 HOH HOH . J 7 HOH B 20 1320 1411 HOH HOH . J 7 HOH B 21 1321 1422 HOH HOH . J 7 HOH B 22 1322 1424 HOH HOH . J 7 HOH B 23 1323 1429 HOH HOH . J 7 HOH B 24 1324 1434 HOH HOH . J 7 HOH B 25 1325 1437 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C10 9H9 . . . D 4 1.936 -11.62 -7.097 1 16.7 ? C10 9H9 1202 A 1 HETATM 2 C C11 9H9 . . . D 4 1.725 -12.265 -5.798 1 17.06 ? C11 9H9 1202 A 1 HETATM 3 C C12 9H9 . . . D 4 1.43 -13.604 -5.551 1 29.41 ? C12 9H9 1202 A 1 HETATM 4 C C14 9H9 . . . D 4 1.251 -14.078 -4.217 1 25.09 ? C14 9H9 1202 A 1 HETATM 5 C C15 9H9 . . . D 4 1.381 -13.164 -3.167 1 36.02 ? C15 9H9 1202 A 1 HETATM 6 C C01 9H9 . . . D 4 3.512 -12.468 -15.563 1 17.65 ? C01 9H9 1202 A 1 HETATM 7 C C02 9H9 . . . D 4 3.239 -12.239 -14.118 1 16.79 ? C02 9H9 1202 A 1 HETATM 8 C C03 9H9 . . . D 4 1.851 -12.17 -13.684 1 18.05 ? C03 9H9 1202 A 1 HETATM 9 C C06 9H9 . . . D 4 2.679 -11.762 -11.411 1 19.59 ? C06 9H9 1202 A 1 HETATM 10 C C08 9H9 . . . D 4 1.107 -11.394 -9.54 1 16.58 ? C08 9H9 1202 A 1 HETATM 11 C C09 9H9 . . . D 4 0.834 -11.824 -8.121 1 15.25 ? C09 9H9 1202 A 1 HETATM 12 C C17 9H9 . . . D 4 1.68 -11.802 -3.42 1 27.99 ? C17 9H9 1202 A 1 HETATM 13 C C18 9H9 . . . D 4 1.856 -11.356 -4.734 1 27.28 ? C18 9H9 1202 A 1 HETATM 14 C C20 9H9 . . . D 4 2.306 -8.766 -4.54 1 28.39 ? C20 9H9 1202 A 1 HETATM 15 C C21 9H9 . . . D 4 0.951 -8.098 -4.152 1 39.07 ? C21 9H9 1202 A 1 HETATM 16 C C23 9H9 . . . D 4 2.042 -10.124 -6.71 1 21.53 ? C23 9H9 1202 A 1 HETATM 17 C C24 9H9 . . . D 4 3.26 -11.989 -7.723 1 17.82 ? C24 9H9 1202 A 1 HETATM 18 C C25 9H9 . . . D 4 3.54 -11.353 -9.095 1 18.12 ? C25 9H9 1202 A 1 HETATM 19 C C27 9H9 . . . D 4 4.202 -12.057 -13.175 1 18.29 ? C27 9H9 1202 A 1 HETATM 20 C C28 9H9 . . . D 4 5.679 -12.135 -13.563 1 17.67 ? C28 9H9 1202 A 1 HETATM 21 C C29 9H9 . . . D 4 5.917 -12.565 -15.025 1 17.41 ? C29 9H9 1202 A 1 HETATM 22 C C30 9H9 . . . D 4 4.896 -11.924 -15.93 1 18.33 ? C30 9H9 1202 A 1 HETATM 23 F F13 9H9 . . . D 4 1.306 -14.464 -6.509 1 25.96 ? F13 9H9 1202 A 1 HETATM 24 F F16 9H9 . . . D 4 1.215 -13.59 -1.944 1 36.69 ? F16 9H9 1202 A 1 HETATM 25 N N05 9H9 . . . D 4 1.614 -11.939 -12.283 1 16.5 ? N05 9H9 1202 A 1 HETATM 26 N N07 9H9 . . . D 4 2.455 -11.561 -10.078 1 18.91 ? N07 9H9 1202 A 1 HETATM 27 N N19 9H9 . . . D 4 2.153 -10.084 -5.226 1 25.35 ? N19 9H9 1202 A 1 HETATM 28 N N26 9H9 . . . D 4 3.922 -11.825 -11.845 1 17.64 ? N26 9H9 1202 A 1 HETATM 29 O O04 9H9 . . . D 4 0.856 -12.313 -14.382 1 17.53 ? O04 9H9 1202 A 1 HETATM 30 O O22 9H9 . . . D 4 -0.09 -8.902 -4.64 1 48.56 ? O22 9H9 1202 A 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 450 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 30 #