data_5ZQU # _model_server_result.job_id RwhBdRoZkU3XJ4ihZ0BcaQ _model_server_result.datetime_utc '2024-12-05 04:18:23' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5zqu # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"R","auth_seq_id":501}' # _entry.id 5ZQU # _exptl.entry_id 5ZQU _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 363.453 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '1-(3,5,5,8,8-pentamethyl-6,7-dihydronaphthalen-2-yl)benzotriazole-5-carboxylic acid' _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 99.269 _cell.angle_gamma 90 _cell.entry_id 5ZQU _cell.length_a 46.571 _cell.length_b 100.492 _cell.length_c 111.01 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5ZQU _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall 'P 2yb' _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 F N N ? 2 K N N ? 2 O N N ? 2 R N N ? 2 S N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 50 A CYS 269 1_555 C SG CYS 50 C CYS 269 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf2 B SG CYS 50 B CYS 269 1_555 D SG CYS 50 D CYS 269 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? # _chem_comp.formula 'C22 H25 N3 O2' _chem_comp.formula_weight 363.453 _chem_comp.id 9HF _chem_comp.mon_nstd_flag . _chem_comp.name '1-(3,5,5,8,8-pentamethyl-6,7-dihydronaphthalen-2-yl)benzotriazole-5-carboxylic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms '1-(3,5,5,8,8-pentamethyl-5,6,7,8-tetrahydro-2-naphthyl)-1H-benzotriazole-5-carboxylic acid' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CAQ CAP 9HF sing 1 n n CAO CAP 9HF sing 2 n n CAO CAH 9HF sing 3 n n CAC CAD 9HF sing 4 n n CAP CAI 9HF sing 5 n n CAP CAT 9HF sing 6 n n NAM NAN 9HF doub 7 n y NAM NAL 9HF sing 8 n y CAI CAJ 9HF doub 9 n y CAI CAE 9HF sing 10 n y NAN CAS 9HF sing 11 n y CAJ CAK 9HF sing 12 n y CAH CAD 9HF sing 13 n n CAD CAE 9HF sing 14 n n CAD CAA 9HF sing 15 n n CAE CAF 9HF doub 16 n y CAK NAL 9HF sing 17 n n CAK CAG 9HF doub 18 n y NAL CAR 9HF sing 19 n y CAF CAG 9HF sing 20 n y CAG CAB 9HF sing 21 n n CAS CAR 9HF doub 22 n y CAS CAV 9HF sing 23 n y CAR CAU 9HF sing 24 n y CAV CAX 9HF doub 25 n y CAU CAW 9HF doub 26 n y CAX CAW 9HF sing 27 n y CAX CAY 9HF sing 28 n n OBA CAY 9HF doub 29 n n CAY OAZ 9HF sing 30 n n OAZ H1 9HF sing 31 n n CAV H2 9HF sing 32 n n CAW H3 9HF sing 33 n n CAU H4 9HF sing 34 n n CAJ H5 9HF sing 35 n n CAQ H6 9HF sing 36 n n CAQ H7 9HF sing 37 n n CAQ H8 9HF sing 38 n n CAT H9 9HF sing 39 n n CAT H10 9HF sing 40 n n CAT H11 9HF sing 41 n n CAO H12 9HF sing 42 n n CAO H13 9HF sing 43 n n CAH H14 9HF sing 44 n n CAH H15 9HF sing 45 n n CAC H16 9HF sing 46 n n CAC H17 9HF sing 47 n n CAC H18 9HF sing 48 n n CAA H19 9HF sing 49 n n CAA H20 9HF sing 50 n n CAA H21 9HF sing 51 n n CAF H22 9HF sing 52 n n CAB H23 9HF sing 53 n n CAB H24 9HF sing 54 n n CAB H25 9HF sing 55 n n # _atom_sites.entry_id 5ZQU _atom_sites.fract_transf_matrix[1][1] 0.021473 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.003504 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009951 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009127 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 9HF A 1 501 1 9HF DRG . F 2 9HF A 1 502 5 9HF DRG . G 3 BR A 1 503 1 BR BR . H 3 BR A 1 504 2 BR BR . I 3 BR A 1 505 7 BR BR . J 3 BR A 1 506 9 BR BR . K 2 9HF B 1 501 2 9HF DRG . L 3 BR B 1 502 5 BR BR . M 3 BR B 1 503 6 BR BR . N 3 BR B 1 504 11 BR BR . O 2 9HF C 1 501 3 9HF DRG . P 3 BR C 1 502 4 BR BR . Q 3 BR C 1 503 10 BR BR . R 2 9HF D 1 501 4 9HF DRG . S 2 9HF D 1 502 6 9HF DRG . T 3 BR D 1 503 3 BR BR . U 3 BR D 1 504 8 BR BR . V 4 HOH A 1 601 39 HOH HOH . V 4 HOH A 2 602 35 HOH HOH . V 4 HOH A 3 603 13 HOH HOH . V 4 HOH A 4 604 104 HOH HOH . V 4 HOH A 5 605 2 HOH HOH . V 4 HOH A 6 606 27 HOH HOH . V 4 HOH A 7 607 34 HOH HOH . V 4 HOH A 8 608 48 HOH HOH . V 4 HOH A 9 609 3 HOH HOH . V 4 HOH A 10 610 65 HOH HOH . V 4 HOH A 11 611 70 HOH HOH . V 4 HOH A 12 612 60 HOH HOH . V 4 HOH A 13 613 5 HOH HOH . V 4 HOH A 14 614 83 HOH HOH . V 4 HOH A 15 615 26 HOH HOH . V 4 HOH A 16 616 68 HOH HOH . V 4 HOH A 17 617 66 HOH HOH . V 4 HOH A 18 618 16 HOH HOH . V 4 HOH A 19 619 102 HOH HOH . V 4 HOH A 20 620 9 HOH HOH . V 4 HOH A 21 621 33 HOH HOH . V 4 HOH A 22 622 14 HOH HOH . V 4 HOH A 23 623 120 HOH HOH . V 4 HOH A 24 624 8 HOH HOH . V 4 HOH A 25 625 4 HOH HOH . V 4 HOH A 26 626 59 HOH HOH . V 4 HOH A 27 627 32 HOH HOH . V 4 HOH A 28 628 110 HOH HOH . V 4 HOH A 29 629 97 HOH HOH . V 4 HOH A 30 630 125 HOH HOH . V 4 HOH A 31 631 111 HOH HOH . V 4 HOH A 32 632 64 HOH HOH . V 4 HOH A 33 633 28 HOH HOH . V 4 HOH A 34 634 136 HOH HOH . V 4 HOH A 35 635 119 HOH HOH . V 4 HOH A 36 636 127 HOH HOH . V 4 HOH A 37 637 123 HOH HOH . V 4 HOH A 38 638 58 HOH HOH . V 4 HOH A 39 639 77 HOH HOH . V 4 HOH A 40 640 122 HOH HOH . V 4 HOH A 41 641 129 HOH HOH . V 4 HOH A 42 642 57 HOH HOH . W 4 HOH B 1 601 55 HOH HOH . W 4 HOH B 2 602 12 HOH HOH . W 4 HOH B 3 603 37 HOH HOH . W 4 HOH B 4 604 17 HOH HOH . W 4 HOH B 5 605 98 HOH HOH . W 4 HOH B 6 606 63 HOH HOH . W 4 HOH B 7 607 99 HOH HOH . W 4 HOH B 8 608 74 HOH HOH . W 4 HOH B 9 609 106 HOH HOH . W 4 HOH B 10 610 29 HOH HOH . W 4 HOH B 11 611 130 HOH HOH . W 4 HOH B 12 612 43 HOH HOH . W 4 HOH B 13 613 61 HOH HOH . W 4 HOH B 14 614 23 HOH HOH . W 4 HOH B 15 615 67 HOH HOH . W 4 HOH B 16 616 76 HOH HOH . W 4 HOH B 17 617 72 HOH HOH . W 4 HOH B 18 618 113 HOH HOH . W 4 HOH B 19 619 85 HOH HOH . W 4 HOH B 20 620 18 HOH HOH . W 4 HOH B 21 621 84 HOH HOH . W 4 HOH B 22 622 51 HOH HOH . W 4 HOH B 23 623 94 HOH HOH . W 4 HOH B 24 624 86 HOH HOH . W 4 HOH B 25 625 19 HOH HOH . W 4 HOH B 26 626 80 HOH HOH . W 4 HOH B 27 627 96 HOH HOH . W 4 HOH B 28 628 81 HOH HOH . W 4 HOH B 29 629 11 HOH HOH . W 4 HOH B 30 630 128 HOH HOH . W 4 HOH B 31 631 118 HOH HOH . W 4 HOH B 32 632 7 HOH HOH . W 4 HOH B 33 633 46 HOH HOH . W 4 HOH B 34 634 134 HOH HOH . W 4 HOH B 35 635 115 HOH HOH . W 4 HOH B 36 636 114 HOH HOH . X 4 HOH C 1 601 44 HOH HOH . X 4 HOH C 2 602 108 HOH HOH . X 4 HOH C 3 603 62 HOH HOH . X 4 HOH C 4 604 41 HOH HOH . X 4 HOH C 5 605 49 HOH HOH . X 4 HOH C 6 606 95 HOH HOH . X 4 HOH C 7 607 82 HOH HOH . X 4 HOH C 8 608 103 HOH HOH . X 4 HOH C 9 609 117 HOH HOH . X 4 HOH C 10 610 92 HOH HOH . X 4 HOH C 11 611 54 HOH HOH . X 4 HOH C 12 612 1 HOH HOH . X 4 HOH C 13 613 31 HOH HOH . X 4 HOH C 14 614 91 HOH HOH . X 4 HOH C 15 615 38 HOH HOH . X 4 HOH C 16 616 135 HOH HOH . X 4 HOH C 17 617 131 HOH HOH . X 4 HOH C 18 618 126 HOH HOH . X 4 HOH C 19 619 133 HOH HOH . Y 4 HOH D 1 601 52 HOH HOH . Y 4 HOH D 2 602 100 HOH HOH . Y 4 HOH D 3 603 6 HOH HOH . Y 4 HOH D 4 604 25 HOH HOH . Y 4 HOH D 5 605 22 HOH HOH . Y 4 HOH D 6 606 73 HOH HOH . Y 4 HOH D 7 607 79 HOH HOH . Y 4 HOH D 8 608 36 HOH HOH . Y 4 HOH D 9 609 10 HOH HOH . Y 4 HOH D 10 610 45 HOH HOH . Y 4 HOH D 11 611 21 HOH HOH . Y 4 HOH D 12 612 116 HOH HOH . Y 4 HOH D 13 613 15 HOH HOH . Y 4 HOH D 14 614 93 HOH HOH . Y 4 HOH D 15 615 69 HOH HOH . Y 4 HOH D 16 616 24 HOH HOH . Y 4 HOH D 17 617 89 HOH HOH . Y 4 HOH D 18 618 90 HOH HOH . Y 4 HOH D 19 619 124 HOH HOH . Y 4 HOH D 20 620 71 HOH HOH . Y 4 HOH D 21 621 121 HOH HOH . Y 4 HOH D 22 622 132 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O OAZ 9HF . . . R 2 -61.288 -32.151 136.48 1 73.47 ? OAZ 9HF 501 D 1 HETATM 2 C CAY 9HF . . . R 2 -60.562 -31.422 135.772 1 72.86 ? CAY 9HF 501 D 1 HETATM 3 O OBA 9HF . . . R 2 -60.823 -31.264 134.558 1 69.64 ? OBA 9HF 501 D 1 HETATM 4 C CAX 9HF . . . R 2 -59.47 -30.771 136.33 1 73.26 ? CAX 9HF 501 D 1 HETATM 5 C CAV 9HF . . . R 2 -59.088 -30.982 137.655 1 74.25 ? CAV 9HF 501 D 1 HETATM 6 C CAW 9HF . . . R 2 -58.749 -29.885 135.547 1 71.62 ? CAW 9HF 501 D 1 HETATM 7 C CAU 9HF . . . R 2 -57.665 -29.248 136.123 1 73.39 ? CAU 9HF 501 D 1 HETATM 8 C CAR 9HF . . . R 2 -57.34 -29.487 137.394 1 76.41 ? CAR 9HF 501 D 1 HETATM 9 C CAS 9HF . . . R 2 -58.032 -30.328 138.144 1 74.31 ? CAS 9HF 501 D 1 HETATM 10 N NAN 9HF . . . R 2 -57.427 -30.308 139.328 1 73.5 ? NAN 9HF 501 D 1 HETATM 11 N NAM 9HF . . . R 2 -56.457 -29.513 139.275 1 72.11 ? NAM 9HF 501 D 1 HETATM 12 N NAL 9HF . . . R 2 -56.373 -29 138.168 1 71.8 ? NAL 9HF 501 D 1 HETATM 13 C CAK 9HF . . . R 2 -55.467 -28.116 137.744 1 73.43 ? CAK 9HF 501 D 1 HETATM 14 C CAJ 9HF . . . R 2 -54.144 -28.52 137.568 1 71.88 ? CAJ 9HF 501 D 1 HETATM 15 C CAI 9HF . . . R 2 -53.173 -27.631 137.11 1 73.64 ? CAI 9HF 501 D 1 HETATM 16 C CAP 9HF . . . R 2 -51.849 -28.077 136.941 1 75.68 ? CAP 9HF 501 D 1 HETATM 17 C CAQ 9HF . . . R 2 -51.461 -29.035 138.071 1 73.56 ? CAQ 9HF 501 D 1 HETATM 18 C CAT 9HF . . . R 2 -51.719 -28.804 135.6 1 73.71 ? CAT 9HF 501 D 1 HETATM 19 C CAO 9HF . . . R 2 -50.894 -26.906 136.933 1 72.16 ? CAO 9HF 501 D 1 HETATM 20 C CAH 9HF . . . R 2 -51.377 -25.972 135.854 1 78.06 ? CAH 9HF 501 D 1 HETATM 21 C CAD 9HF . . . R 2 -52.663 -25.358 136.362 1 76.95 ? CAD 9HF 501 D 1 HETATM 22 C CAC 9HF . . . R 2 -52.362 -24.502 137.576 1 77.84 ? CAC 9HF 501 D 1 HETATM 23 C CAA 9HF . . . R 2 -53.292 -24.484 135.271 1 76.87 ? CAA 9HF 501 D 1 HETATM 24 C CAE 9HF . . . R 2 -53.556 -26.323 136.8 1 75.39 ? CAE 9HF 501 D 1 HETATM 25 C CAF 9HF . . . R 2 -54.868 -25.919 136.986 1 79.99 ? CAF 9HF 501 D 1 HETATM 26 C CAG 9HF . . . R 2 -55.829 -26.799 137.445 1 78.6 ? CAG 9HF 501 D 1 HETATM 27 C CAB 9HF . . . R 2 -57.126 -26.31 137.597 1 82.82 ? CAB 9HF 501 D 1 # _model_server_stats.io_time_ms 18 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 312 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 27 #