data_5ZS7 # _model_server_result.job_id V1y192TAQ51vtxFcdAPkUQ _model_server_result.datetime_utc '2024-11-22 12:07:48' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5zs7 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":301}' # _entry.id 5ZS7 # _exptl.entry_id 5ZS7 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 195.237 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '2-(N-MORPHOLINO)-ETHANESULFONIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5ZS7 _cell.length_a 78.833 _cell.length_b 82.827 _cell.length_c 100.232 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5ZS7 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 B C ARG 9 C ARG 10 1_555 B N NEP 10 C NEP 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale2 B C NEP 10 C NEP 11 1_555 B N GLY 11 C GLY 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale3 B C ASN 98 C ASN 99 1_555 B N ALY 99 C ALY 100 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale4 B C ALY 99 C ALY 100 1_555 B N ALA 100 C ALA 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? # _chem_comp.formula 'C6 H13 N O4 S' _chem_comp.formula_weight 195.237 _chem_comp.id MES _chem_comp.mon_nstd_flag . _chem_comp.name '2-(N-MORPHOLINO)-ETHANESULFONIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O1 C2 MES sing 246 n n O1 C6 MES sing 247 n n C2 C3 MES sing 248 n n C2 H21 MES sing 249 n n C2 H22 MES sing 250 n n C3 N4 MES sing 251 n n C3 H31 MES sing 252 n n C3 H32 MES sing 253 n n N4 C5 MES sing 254 n n N4 C7 MES sing 255 n n N4 HN4 MES sing 256 n n C5 C6 MES sing 257 n n C5 H51 MES sing 258 n n C5 H52 MES sing 259 n n C6 H61 MES sing 260 n n C6 H62 MES sing 261 n n C7 C8 MES sing 262 n n C7 H71 MES sing 263 n n C7 H72 MES sing 264 n n C8 S MES sing 265 n n C8 H81 MES sing 266 n n C8 H82 MES sing 267 n n S O1S MES doub 268 n n S O2S MES doub 269 n n S O3S MES sing 270 n n # _atom_sites.entry_id 5ZS7 _atom_sites.fract_transf_matrix[1][1] 0.012685 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012073 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009977 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 MES C 1 301 303 MES MES . D 4 CL C 1 302 1 CL CL . E 5 HOH B 1 301 5 HOH HOH . E 5 HOH B 2 302 81 HOH HOH . E 5 HOH B 3 303 27 HOH HOH . E 5 HOH B 4 304 34 HOH HOH . E 5 HOH B 5 305 39 HOH HOH . E 5 HOH B 6 306 37 HOH HOH . E 5 HOH B 7 307 105 HOH HOH . E 5 HOH B 8 308 6 HOH HOH . E 5 HOH B 9 309 100 HOH HOH . E 5 HOH B 10 310 36 HOH HOH . E 5 HOH B 11 311 50 HOH HOH . E 5 HOH B 12 312 26 HOH HOH . E 5 HOH B 13 313 15 HOH HOH . E 5 HOH B 14 314 3 HOH HOH . E 5 HOH B 15 315 9 HOH HOH . E 5 HOH B 16 316 20 HOH HOH . E 5 HOH B 17 317 2 HOH HOH . E 5 HOH B 18 318 90 HOH HOH . E 5 HOH B 19 319 67 HOH HOH . E 5 HOH B 20 320 127 HOH HOH . E 5 HOH B 21 321 24 HOH HOH . E 5 HOH B 22 322 13 HOH HOH . E 5 HOH B 23 323 4 HOH HOH . E 5 HOH B 24 324 16 HOH HOH . E 5 HOH B 25 325 7 HOH HOH . E 5 HOH B 26 326 114 HOH HOH . E 5 HOH B 27 327 17 HOH HOH . E 5 HOH B 28 328 121 HOH HOH . E 5 HOH B 29 329 129 HOH HOH . E 5 HOH B 30 330 19 HOH HOH . E 5 HOH B 31 331 38 HOH HOH . E 5 HOH B 32 332 62 HOH HOH . E 5 HOH B 33 333 72 HOH HOH . E 5 HOH B 34 334 110 HOH HOH . E 5 HOH B 35 335 97 HOH HOH . E 5 HOH B 36 336 126 HOH HOH . E 5 HOH B 37 337 53 HOH HOH . E 5 HOH B 38 338 70 HOH HOH . E 5 HOH B 39 339 125 HOH HOH . E 5 HOH B 40 340 52 HOH HOH . E 5 HOH B 41 341 109 HOH HOH . E 5 HOH B 42 342 123 HOH HOH . E 5 HOH B 43 343 54 HOH HOH . E 5 HOH B 44 344 60 HOH HOH . E 5 HOH B 45 345 74 HOH HOH . E 5 HOH B 46 346 42 HOH HOH . E 5 HOH B 47 347 112 HOH HOH . E 5 HOH B 48 348 76 HOH HOH . E 5 HOH B 49 349 106 HOH HOH . E 5 HOH B 50 350 104 HOH HOH . E 5 HOH B 51 351 124 HOH HOH . E 5 HOH B 52 352 30 HOH HOH . E 5 HOH B 53 353 107 HOH HOH . E 5 HOH B 54 354 57 HOH HOH . E 5 HOH B 55 355 133 HOH HOH . E 5 HOH B 56 356 111 HOH HOH . F 5 HOH C 1 401 117 HOH HOH . F 5 HOH C 2 402 92 HOH HOH . F 5 HOH C 3 403 46 HOH HOH . F 5 HOH C 4 404 1 HOH HOH . F 5 HOH C 5 405 55 HOH HOH . F 5 HOH C 6 406 49 HOH HOH . F 5 HOH C 7 407 51 HOH HOH . F 5 HOH C 8 408 89 HOH HOH . F 5 HOH C 9 409 95 HOH HOH . F 5 HOH C 10 410 83 HOH HOH . F 5 HOH C 11 411 18 HOH HOH . F 5 HOH C 12 412 10 HOH HOH . F 5 HOH C 13 413 12 HOH HOH . F 5 HOH C 14 414 32 HOH HOH . F 5 HOH C 15 415 29 HOH HOH . F 5 HOH C 16 416 78 HOH HOH . F 5 HOH C 17 417 40 HOH HOH . F 5 HOH C 18 418 23 HOH HOH . F 5 HOH C 19 419 43 HOH HOH . F 5 HOH C 20 420 75 HOH HOH . F 5 HOH C 21 421 8 HOH HOH . F 5 HOH C 22 422 108 HOH HOH . F 5 HOH C 23 423 48 HOH HOH . F 5 HOH C 24 424 28 HOH HOH . F 5 HOH C 25 425 44 HOH HOH . F 5 HOH C 26 426 66 HOH HOH . F 5 HOH C 27 427 80 HOH HOH . F 5 HOH C 28 428 33 HOH HOH . F 5 HOH C 29 429 22 HOH HOH . F 5 HOH C 30 430 98 HOH HOH . F 5 HOH C 31 431 69 HOH HOH . F 5 HOH C 32 432 41 HOH HOH . F 5 HOH C 33 433 56 HOH HOH . F 5 HOH C 34 434 21 HOH HOH . F 5 HOH C 35 435 11 HOH HOH . F 5 HOH C 36 436 64 HOH HOH . F 5 HOH C 37 437 119 HOH HOH . F 5 HOH C 38 438 14 HOH HOH . F 5 HOH C 39 439 85 HOH HOH . F 5 HOH C 40 440 122 HOH HOH . F 5 HOH C 41 441 73 HOH HOH . F 5 HOH C 42 442 35 HOH HOH . F 5 HOH C 43 443 79 HOH HOH . F 5 HOH C 44 444 96 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O1 MES . . . C 3 56.947 -9.792 27.207 1 75.09 ? O1 MES 301 C 1 HETATM 2 C C2 MES . . . C 3 55.821 -10.414 27.84 1 70.91 ? C2 MES 301 C 1 HETATM 3 C C3 MES . . . C 3 54.67 -10.716 26.875 1 55.45 ? C3 MES 301 C 1 HETATM 4 N N4 MES . . . C 3 54.433 -9.519 26.076 1 52.04 ? N4 MES 301 C 1 HETATM 5 C C5 MES . . . C 3 55.575 -8.917 25.396 1 67.73 ? C5 MES 301 C 1 HETATM 6 C C6 MES . . . C 3 56.607 -8.609 26.479 1 69.07 ? C6 MES 301 C 1 HETATM 7 C C7 MES . . . C 3 53.142 -9.407 25.416 1 49.01 ? C7 MES 301 C 1 HETATM 8 C C8 MES . . . C 3 53.35 -9.786 23.95 1 42.48 ? C8 MES 301 C 1 HETATM 9 S S MES . . . C 3 51.985 -10.587 23.431 1 40.12 ? S MES 301 C 1 HETATM 10 O O1S MES . . . C 3 50.757 -9.813 23.724 1 35.84 ? O1S MES 301 C 1 HETATM 11 O O2S MES . . . C 3 52.033 -10.804 21.974 1 31.14 ? O2S MES 301 C 1 HETATM 12 O O3S MES . . . C 3 51.909 -11.878 24.158 1 34.82 ? O3S MES 301 C 1 # _model_server_stats.io_time_ms 93 _model_server_stats.parse_time_ms 30 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 285 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 12 #