data_5ZS9 # _model_server_result.job_id rCUUJyhLafcQMi78gxI_SQ _model_server_result.datetime_utc '2024-11-23 21:36:50' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5zs9 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":501}' # _entry.id 5ZS9 # _exptl.entry_id 5ZS9 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 106.12 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description DI(HYDROXYETHYL)ETHER _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5ZS9 _cell.length_a 91.9 _cell.length_b 91.9 _cell.length_c 127.1 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5ZS9 _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 5_554 x-y,-y,-z-1/3 1 0 0 0 -1 0 0 0 -1 0 0 -42.366667 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C HIS 226 A HIS 223 1_555 A N LLP 227 A LLP 224 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale2 A C LLP 227 A LLP 224 1_555 A N MET 228 A MET 225 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? # _chem_comp.formula 'C4 H10 O3' _chem_comp.formula_weight 106.12 _chem_comp.id PEG _chem_comp.mon_nstd_flag . _chem_comp.name DI(HYDROXYETHYL)ETHER _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 PEG sing 284 n n C1 C2 PEG sing 285 n n C1 H11 PEG sing 286 n n C1 H12 PEG sing 287 n n O1 HO1 PEG sing 288 n n C2 O2 PEG sing 289 n n C2 H21 PEG sing 290 n n C2 H22 PEG sing 291 n n O2 C3 PEG sing 292 n n C3 C4 PEG sing 293 n n C3 H31 PEG sing 294 n n C3 H32 PEG sing 295 n n C4 O4 PEG sing 296 n n C4 H41 PEG sing 297 n n C4 H42 PEG sing 298 n n O4 HO4 PEG sing 299 n n # _atom_sites.entry_id 5ZS9 _atom_sites.fract_transf_matrix[1][1] 0.010881 _atom_sites.fract_transf_matrix[1][2] 0.006282 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012565 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007868 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 PEG A 1 501 1 PEG PEG . C 3 HOH A 1 601 4 HOH HOH . C 3 HOH A 2 602 22 HOH HOH . C 3 HOH A 3 603 12 HOH HOH . C 3 HOH A 4 604 18 HOH HOH . C 3 HOH A 5 605 8 HOH HOH . C 3 HOH A 6 606 2 HOH HOH . C 3 HOH A 7 607 19 HOH HOH . C 3 HOH A 8 608 29 HOH HOH . C 3 HOH A 9 609 14 HOH HOH . C 3 HOH A 10 610 16 HOH HOH . C 3 HOH A 11 611 9 HOH HOH . C 3 HOH A 12 612 3 HOH HOH . C 3 HOH A 13 613 25 HOH HOH . C 3 HOH A 14 614 10 HOH HOH . C 3 HOH A 15 615 11 HOH HOH . C 3 HOH A 16 616 17 HOH HOH . C 3 HOH A 17 617 30 HOH HOH . C 3 HOH A 18 618 26 HOH HOH . C 3 HOH A 19 619 1 HOH HOH . C 3 HOH A 20 620 27 HOH HOH . C 3 HOH A 21 621 28 HOH HOH . C 3 HOH A 22 622 7 HOH HOH . C 3 HOH A 23 623 23 HOH HOH . C 3 HOH A 24 624 21 HOH HOH . C 3 HOH A 25 625 24 HOH HOH . C 3 HOH A 26 626 15 HOH HOH . C 3 HOH A 27 627 20 HOH HOH . C 3 HOH A 28 628 13 HOH HOH . C 3 HOH A 29 629 6 HOH HOH . C 3 HOH A 30 630 5 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 PEG . . . B 2 46.428 15.334 -13.921 1 45.47 ? C1 PEG 501 A 1 HETATM 2 O O1 PEG . . . B 2 46.842 16.356 -14.794 1 45.42 ? O1 PEG 501 A 1 HETATM 3 C C2 PEG . . . B 2 47.164 15.313 -12.583 1 50.41 ? C2 PEG 501 A 1 HETATM 4 O O2 PEG . . . B 2 46.575 16.123 -11.605 1 56.91 ? O2 PEG 501 A 1 HETATM 5 C C3 PEG . . . B 2 47.417 16.335 -10.497 1 58.62 ? C3 PEG 501 A 1 HETATM 6 C C4 PEG . . . B 2 47.434 17.809 -10.081 1 58.88 ? C4 PEG 501 A 1 HETATM 7 O O4 PEG . . . B 2 48.751 18.215 -9.82 1 58.5 ? O4 PEG 501 A 1 # _model_server_stats.io_time_ms 87 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 265 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 7 #