data_5ZSO
#
_model_server_result.job_id            DsMMM5bN-j_1NG1cXTtyng 
_model_server_result.datetime_utc      '2024-11-24 04:04:07' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5zso 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":502}' 
#
_entry.id    5ZSO 
#
_exptl.entry_id    5ZSO 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              352.301 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            N-({3-HYDROXY-2-METHYL-5-[(PHOSPHONOOXY)METHYL]PYRIDIN-4-YL}METHYL)-L-CYSTEINE 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            5ZSO 
_cell.length_a            91.8 
_cell.length_b            91.8 
_cell.length_c            127 
_cell.Z_PDB               6 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5ZSO 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        152 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 31 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 5_554 x-y,-y,-z-1/3 1 0 0 0 -1 0 0 0 -1 0 0 -42.333333 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A C HIS 363 A HIS 360 1_555 A N CSS 364 A CSS 361 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? 
covale ? covale2 A C CSS 364 A CSS 361 1_555 A N ALA 365 A ALA 362 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? 
#
_chem_comp.formula           'C11 H17 N2 O7 P S' 
_chem_comp.formula_weight    352.301 
_chem_comp.id                C6P 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              N-({3-HYDROXY-2-METHYL-5-[(PHOSPHONOOXY)METHYL]PYRIDIN-4-YL}METHYL)-L-CYSTEINE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     4-((1-CARBOXY-2-THIOL-ETHYLAMINO)-METHYL)-3-HYDROXY-2-METHYL-5-PHOSPHONOOXYMETHYL-PYRIDINIUM 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N CA C6P sing 70 n n 
N C4A C6P sing 71 n n 
N HN C6P sing 72 n n 
C O C6P doub 73 n n 
C CA C6P sing 74 n n 
C OXT C6P sing 75 n n 
P OP2 C6P doub 76 n n 
P OP1 C6P sing 77 n n 
P OP3 C6P sing 78 n n 
P OP4 C6P sing 79 n n 
OP3 HOP3 C6P sing 80 n n 
OP1 HOP1 C6P sing 81 n n 
OP4 C5M C6P sing 82 n n 
C5M C5 C6P sing 83 n n 
C5M H5M1 C6P sing 84 n n 
C5M H5M2 C6P sing 85 n n 
C5 C4 C6P sing 86 n y 
C5 C6 C6P doub 87 n y 
C6 N1 C6P sing 88 n y 
C6 H6 C6P sing 89 n n 
N1 C2 C6P doub 90 n y 
C2 C3 C6P sing 91 n y 
C2 C2A C6P sing 92 n n 
C2A H2A1 C6P sing 93 n n 
C2A H2A2 C6P sing 94 n n 
C2A H2A3 C6P sing 95 n n 
C3 C4 C6P doub 96 n y 
C3 O3 C6P sing 97 n n 
O3 HO3 C6P sing 98 n n 
C4 C4A C6P sing 99 n n 
C4A H4A1 C6P sing 100 n n 
C4A H4A2 C6P sing 101 n n 
CA CB C6P sing 102 n n 
CA HA C6P sing 103 n n 
OXT HOXT C6P sing 104 n n 
CB SG C6P sing 105 n n 
CB HB1 C6P sing 106 n n 
CB HB2 C6P sing 107 n n 
SG HSG C6P sing 108 n n 
#
_atom_sites.entry_id                     5ZSO 
_atom_sites.fract_transf_matrix[1][1]    0.010893 
_atom_sites.fract_transf_matrix[1][2]    0.006289 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.012578 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007874 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 PEG A 1 501 1 PEG PEG . 
C 3 C6P A 1 502 1 C6P C6P . 
D 4 HOH A 1 601 61 HOH HOH . 
D 4 HOH A 2 602 57 HOH HOH . 
D 4 HOH A 3 603 51 HOH HOH . 
D 4 HOH A 4 604 68 HOH HOH . 
D 4 HOH A 5 605 36 HOH HOH . 
D 4 HOH A 6 606 67 HOH HOH . 
D 4 HOH A 7 607 5 HOH HOH . 
D 4 HOH A 8 608 37 HOH HOH . 
D 4 HOH A 9 609 1 HOH HOH . 
D 4 HOH A 10 610 33 HOH HOH . 
D 4 HOH A 11 611 34 HOH HOH . 
D 4 HOH A 12 612 30 HOH HOH . 
D 4 HOH A 13 613 48 HOH HOH . 
D 4 HOH A 14 614 20 HOH HOH . 
D 4 HOH A 15 615 55 HOH HOH . 
D 4 HOH A 16 616 53 HOH HOH . 
D 4 HOH A 17 617 40 HOH HOH . 
D 4 HOH A 18 618 52 HOH HOH . 
D 4 HOH A 19 619 43 HOH HOH . 
D 4 HOH A 20 620 54 HOH HOH . 
D 4 HOH A 21 621 9 HOH HOH . 
D 4 HOH A 22 622 18 HOH HOH . 
D 4 HOH A 23 623 62 HOH HOH . 
D 4 HOH A 24 624 39 HOH HOH . 
D 4 HOH A 25 625 35 HOH HOH . 
D 4 HOH A 26 626 46 HOH HOH . 
D 4 HOH A 27 627 49 HOH HOH . 
D 4 HOH A 28 628 56 HOH HOH . 
D 4 HOH A 29 629 42 HOH HOH . 
D 4 HOH A 30 630 23 HOH HOH . 
D 4 HOH A 31 631 38 HOH HOH . 
D 4 HOH A 32 632 22 HOH HOH . 
D 4 HOH A 33 633 59 HOH HOH . 
D 4 HOH A 34 634 50 HOH HOH . 
D 4 HOH A 35 635 19 HOH HOH . 
D 4 HOH A 36 636 44 HOH HOH . 
D 4 HOH A 37 637 63 HOH HOH . 
D 4 HOH A 38 638 60 HOH HOH . 
D 4 HOH A 39 639 66 HOH HOH . 
D 4 HOH A 40 640 41 HOH HOH . 
D 4 HOH A 41 641 45 HOH HOH . 
D 4 HOH A 42 642 58 HOH HOH . 
D 4 HOH A 43 643 64 HOH HOH . 
D 4 HOH A 44 644 14 HOH HOH . 
D 4 HOH A 45 645 47 HOH HOH . 
D 4 HOH A 46 646 27 HOH HOH . 
D 4 HOH A 47 647 6 HOH HOH . 
D 4 HOH A 48 648 31 HOH HOH . 
D 4 HOH A 49 649 21 HOH HOH . 
D 4 HOH A 50 650 28 HOH HOH . 
D 4 HOH A 51 651 3 HOH HOH . 
D 4 HOH A 52 652 2 HOH HOH . 
D 4 HOH A 53 653 10 HOH HOH . 
D 4 HOH A 54 654 29 HOH HOH . 
D 4 HOH A 55 655 26 HOH HOH . 
D 4 HOH A 56 656 65 HOH HOH . 
D 4 HOH A 57 657 25 HOH HOH . 
D 4 HOH A 58 658 12 HOH HOH . 
D 4 HOH A 59 659 7 HOH HOH . 
D 4 HOH A 60 660 8 HOH HOH . 
D 4 HOH A 61 661 13 HOH HOH . 
D 4 HOH A 62 662 24 HOH HOH . 
D 4 HOH A 63 663 15 HOH HOH . 
D 4 HOH A 64 664 32 HOH HOH . 
D 4 HOH A 65 665 16 HOH HOH . 
D 4 HOH A 66 666 11 HOH HOH . 
D 4 HOH A 67 667 4 HOH HOH . 
D 4 HOH A 68 668 17 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N C6P . . . C 3 45.469 -15.48 -16.58 1 59.69 ? N C6P 502 A 1 
HETATM 2 C C C6P . . . C 3 43.613 -17.194 -16.571 1 46.37 ? C C6P 502 A 1 
HETATM 3 O O C6P . . . C 3 42.694 -17.716 -17.239 1 45.27 ? O C6P 502 A 1 
HETATM 4 P P C6P . . . C 3 45.648 -10.333 -16.856 1 50.34 ? P C6P 502 A 1 
HETATM 5 O OP3 C6P . . . C 3 46.545 -9.226 -17.351 1 63.77 ? OP3 C6P 502 A 1 
HETATM 6 O OP1 C6P . . . C 3 44.394 -9.735 -16.268 1 58.42 ? OP1 C6P 502 A 1 
HETATM 7 O OP2 C6P . . . C 3 45.281 -11.245 -18.001 1 59.83 ? OP2 C6P 502 A 1 
HETATM 8 O OP4 C6P . . . C 3 46.441 -11.188 -15.698 1 56.57 ? OP4 C6P 502 A 1 
HETATM 9 C C5M C6P . . . C 3 47.03 -12.407 -16.036 1 57.91 ? C5M C6P 502 A 1 
HETATM 10 C C5 C6P . . . C 3 47.167 -13.218 -14.755 1 53.21 ? C5 C6P 502 A 1 
HETATM 11 C C6 C6P . . . C 3 48.161 -12.914 -13.846 1 52.96 ? C6 C6P 502 A 1 
HETATM 12 N N1 C6P . . . C 3 48.283 -13.626 -12.709 1 51.19 ? N1 C6P 502 A 1 
HETATM 13 C C2 C6P . . . C 3 47.44 -14.639 -12.445 1 48.81 ? C2 C6P 502 A 1 
HETATM 14 C C2A C6P . . . C 3 47.576 -15.447 -11.161 1 46.51 ? C2A C6P 502 A 1 
HETATM 15 C C3 C6P . . . C 3 46.444 -14.941 -13.352 1 52.25 ? C3 C6P 502 A 1 
HETATM 16 O O3 C6P . . . C 3 45.554 -15.984 -13.099 1 55.21 ? O3 C6P 502 A 1 
HETATM 17 C C4 C6P . . . C 3 46.317 -14.246 -14.512 1 54.71 ? C4 C6P 502 A 1 
HETATM 18 C C4A C6P . . . C 3 45.191 -14.588 -15.493 1 59.22 ? C4A C6P 502 A 1 
HETATM 19 C CA C6P . . . C 3 44.196 -15.903 -16.977 1 52.27 ? CA C6P 502 A 1 
HETATM 20 O OXT C6P . . . C 3 44.058 -17.772 -15.555 1 42.21 ? OXT C6P 502 A 1 
HETATM 21 C CB C6P . . . C 3 44.033 -15.663 -18.428 1 49.94 ? CB C6P 502 A 1 
HETATM 22 S SG C6P . . . C 3 45.642 -16.018 -19.165 1 56.49 ? SG C6P 502 A 1 
#
_model_server_stats.io_time_ms              15 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    6 
_model_server_stats.query_time_ms           296 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           22 
#