data_5ZSX # _model_server_result.job_id cFyS_FCDegtYWZFOO54Tzw _model_server_result.datetime_utc '2024-11-14 18:48:55' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5zsx # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":403}' # _entry.id 5ZSX # _exptl.entry_id 5ZSX _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 128.101 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 3-FLUOROBENZENE-1,2-DIOL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5ZSX _cell.length_a 102.281 _cell.length_b 102.281 _cell.length_c 113.851 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5ZSX _symmetry.cell_setting ? _symmetry.Int_Tables_number 180 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 62 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_655 -x+1,-y,z -1 0 0 0 -1 0 0 0 1 102.281 0 0 3 'crystal symmetry operation' 8_556 x-y,-y,-z+1 1 0 0 0 -1 0 0 0 -1 0 0 113.851 4 'crystal symmetry operation' 11_656 -x+y+1,y,-z+1 -1 0 0 0 1 0 0 0 -1 102.281 0 113.851 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 150 A HIS 150 1_555 C FE FE . A FE 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.181 ? metalc ? metalc2 A OG1 THR 204 A THR 204 1_555 B CA CA . A CA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.444 ? metalc ? metalc3 A O HIS 206 A HIS 206 1_555 B CA CA . A CA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.383 ? metalc ? metalc4 A OD1 ASP 207 A ASP 207 1_555 B CA CA . A CA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.495 ? metalc ? metalc5 A NE2 HIS 220 A HIS 220 1_555 C FE FE . A FE 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.218 ? metalc ? metalc6 A OE2 GLU 271 A GLU 271 1_555 C FE FE . A FE 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.109 ? metalc ? metalc7 B CA CA . A CA 401 1_555 H O HOH . A HOH 517 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.666 ? metalc ? metalc8 C FE FE . A FE 402 1_555 D O2 3FA . A 3FA 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.334 ? metalc ? metalc9 C FE FE . A FE 402 1_555 D O1 3FA . A 3FA 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.15 ? metalc ? metalc10 C FE FE . A FE 402 1_555 H O HOH . A HOH 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.589 ? # _chem_comp.formula 'C6 H5 F O2' _chem_comp.formula_weight 128.101 _chem_comp.id 3FA _chem_comp.mon_nstd_flag . _chem_comp.name 3-FLUOROBENZENE-1,2-DIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 3-FLUOROCATECHOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O1 C1 3FA sing 1 n n O1 HO1 3FA sing 2 n n C1 C3 3FA doub 3 n y C1 C2 3FA sing 4 n y C3 F1 3FA sing 5 n n C3 C5 3FA sing 6 n y C5 C6 3FA doub 7 n y C5 H5 3FA sing 8 n n C6 C4 3FA sing 9 n y C6 H6 3FA sing 10 n n C4 C2 3FA doub 11 n y C4 H4 3FA sing 12 n n C2 O2 3FA sing 13 n n O2 HO2 3FA sing 14 n n # _atom_sites.entry_id 5ZSX _atom_sites.fract_transf_matrix[1][1] 0.009777 _atom_sites.fract_transf_matrix[1][2] 0.005645 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011289 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008783 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CA A 1 401 2 CA CA . C 3 FE A 1 402 1 FE FE . D 4 3FA A 1 403 1 3FA 3FA . E 5 PEG A 1 404 1 PEG PEG . F 6 EDO A 1 405 1 EDO EDO . G 6 EDO A 1 406 2 EDO EDO . H 7 HOH A 1 501 46 HOH HOH . H 7 HOH A 2 502 84 HOH HOH . H 7 HOH A 3 503 68 HOH HOH . H 7 HOH A 4 504 70 HOH HOH . H 7 HOH A 5 505 54 HOH HOH . H 7 HOH A 6 506 79 HOH HOH . H 7 HOH A 7 507 82 HOH HOH . H 7 HOH A 8 508 18 HOH HOH . H 7 HOH A 9 509 42 HOH HOH . H 7 HOH A 10 510 16 HOH HOH . H 7 HOH A 11 511 37 HOH HOH . H 7 HOH A 12 512 10 HOH HOH . H 7 HOH A 13 513 47 HOH HOH . H 7 HOH A 14 514 13 HOH HOH . H 7 HOH A 15 515 5 HOH HOH . H 7 HOH A 16 516 30 HOH HOH . H 7 HOH A 17 517 81 HOH HOH . H 7 HOH A 18 518 83 HOH HOH . H 7 HOH A 19 519 14 HOH HOH . H 7 HOH A 20 520 28 HOH HOH . H 7 HOH A 21 521 43 HOH HOH . H 7 HOH A 22 522 17 HOH HOH . H 7 HOH A 23 523 1 HOH HOH . H 7 HOH A 24 524 26 HOH HOH . H 7 HOH A 25 525 2 HOH HOH . H 7 HOH A 26 526 60 HOH HOH . H 7 HOH A 27 527 45 HOH HOH . H 7 HOH A 28 528 29 HOH HOH . H 7 HOH A 29 529 27 HOH HOH . H 7 HOH A 30 530 4 HOH HOH . H 7 HOH A 31 531 19 HOH HOH . H 7 HOH A 32 532 73 HOH HOH . H 7 HOH A 33 533 20 HOH HOH . H 7 HOH A 34 534 9 HOH HOH . H 7 HOH A 35 535 39 HOH HOH . H 7 HOH A 36 536 3 HOH HOH . H 7 HOH A 37 537 15 HOH HOH . H 7 HOH A 38 538 8 HOH HOH . H 7 HOH A 39 539 52 HOH HOH . H 7 HOH A 40 540 77 HOH HOH . H 7 HOH A 41 541 74 HOH HOH . H 7 HOH A 42 542 75 HOH HOH . H 7 HOH A 43 543 34 HOH HOH . H 7 HOH A 44 544 21 HOH HOH . H 7 HOH A 45 545 69 HOH HOH . H 7 HOH A 46 546 22 HOH HOH . H 7 HOH A 47 547 80 HOH HOH . H 7 HOH A 48 548 6 HOH HOH . H 7 HOH A 49 549 66 HOH HOH . H 7 HOH A 50 550 72 HOH HOH . H 7 HOH A 51 551 12 HOH HOH . H 7 HOH A 52 552 67 HOH HOH . H 7 HOH A 53 553 11 HOH HOH . H 7 HOH A 54 554 62 HOH HOH . H 7 HOH A 55 555 31 HOH HOH . H 7 HOH A 56 556 76 HOH HOH . H 7 HOH A 57 557 32 HOH HOH . H 7 HOH A 58 558 78 HOH HOH . H 7 HOH A 59 559 38 HOH HOH . H 7 HOH A 60 560 71 HOH HOH . H 7 HOH A 61 561 33 HOH HOH . H 7 HOH A 62 562 7 HOH HOH . H 7 HOH A 63 563 51 HOH HOH . H 7 HOH A 64 564 63 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O1 3FA . . . D 4 36.29 15.903 55.691 1 48.71 ? O1 3FA 403 A 1 HETATM 2 C C1 3FA . . . D 4 36.263 15.341 56.972 1 55.83 ? C1 3FA 403 A 1 HETATM 3 C C3 3FA . . . D 4 36.37 16.143 58.1 1 61.21 ? C3 3FA 403 A 1 HETATM 4 F F1 3FA . . . D 4 36.501 17.497 57.975 1 62.55 ? F1 3FA 403 A 1 HETATM 5 C C5 3FA . . . D 4 36.344 15.566 59.36 1 61.01 ? C5 3FA 403 A 1 HETATM 6 C C6 3FA . . . D 4 36.21 14.192 59.492 1 63.55 ? C6 3FA 403 A 1 HETATM 7 C C4 3FA . . . D 4 36.104 13.394 58.363 1 62.62 ? C4 3FA 403 A 1 HETATM 8 C C2 3FA . . . D 4 36.131 13.971 57.102 1 58.08 ? C2 3FA 403 A 1 HETATM 9 O O2 3FA . . . D 4 36.027 13.178 55.95 1 51.39 ? O2 3FA 403 A 1 # _model_server_stats.io_time_ms 32 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 224 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 9 #