data_5ZSX
#
_model_server_result.job_id            oktc-GdjAkjcmVGugSuZGw 
_model_server_result.datetime_utc      '2024-11-14 18:59:15' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5zsx 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":405}' 
#
_entry.id    5ZSX 
#
_exptl.entry_id    5ZSX 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              62.068 
_entity.id                          6 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-ETHANEDIOL 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            5ZSX 
_cell.length_a            102.281 
_cell.length_b            102.281 
_cell.length_c            113.851 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5ZSX 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        180 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 62 2 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2,3,4 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 4_655 -x+1,-y,z -1 0 0 0 -1 0 0 0 1 102.281 0 0 
3 'crystal symmetry operation' 8_556 x-y,-y,-z+1 1 0 0 0 -1 0 0 0 -1 0 0 113.851 
4 'crystal symmetry operation' 11_656 -x+y+1,y,-z+1 -1 0 0 0 1 0 0 0 -1 102.281 0 113.851 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 6 F N N 
? 6 G N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A NE2 HIS 150 A HIS 150 1_555 C FE FE . A FE 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.181 ? 
metalc ? metalc2 A OG1 THR 204 A THR 204 1_555 B CA CA . A CA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.444 ? 
metalc ? metalc3 A O HIS 206 A HIS 206 1_555 B CA CA . A CA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.383 ? 
metalc ? metalc4 A OD1 ASP 207 A ASP 207 1_555 B CA CA . A CA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.495 ? 
metalc ? metalc5 A NE2 HIS 220 A HIS 220 1_555 C FE FE . A FE 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.218 ? 
metalc ? metalc6 A OE2 GLU 271 A GLU 271 1_555 C FE FE . A FE 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.109 ? 
metalc ? metalc7 B CA CA . A CA 401 1_555 H O HOH . A HOH 517 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.666 ? 
metalc ? metalc8 C FE FE . A FE 402 1_555 D O2 3FA . A 3FA 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.334 ? 
metalc ? metalc9 C FE FE . A FE 402 1_555 D O1 3FA . A 3FA 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.15 ? 
metalc ? metalc10 C FE FE . A FE 402 1_555 H O HOH . A HOH 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.589 ? 
#
_chem_comp.formula           'C2 H6 O2' 
_chem_comp.formula_weight    62.068 
_chem_comp.id                EDO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-ETHANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'ETHYLENE GLYCOL' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 EDO sing 97 n n 
C1 C2 EDO sing 98 n n 
C1 H11 EDO sing 99 n n 
C1 H12 EDO sing 100 n n 
O1 HO1 EDO sing 101 n n 
C2 O2 EDO sing 102 n n 
C2 H21 EDO sing 103 n n 
C2 H22 EDO sing 104 n n 
O2 HO2 EDO sing 105 n n 
#
_atom_sites.entry_id                     5ZSX 
_atom_sites.fract_transf_matrix[1][1]    0.009777 
_atom_sites.fract_transf_matrix[1][2]    0.005645 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.011289 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.008783 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 CA A 1 401 2 CA CA . 
C 3 FE A 1 402 1 FE FE . 
D 4 3FA A 1 403 1 3FA 3FA . 
E 5 PEG A 1 404 1 PEG PEG . 
F 6 EDO A 1 405 1 EDO EDO . 
G 6 EDO A 1 406 2 EDO EDO . 
H 7 HOH A 1 501 46 HOH HOH . 
H 7 HOH A 2 502 84 HOH HOH . 
H 7 HOH A 3 503 68 HOH HOH . 
H 7 HOH A 4 504 70 HOH HOH . 
H 7 HOH A 5 505 54 HOH HOH . 
H 7 HOH A 6 506 79 HOH HOH . 
H 7 HOH A 7 507 82 HOH HOH . 
H 7 HOH A 8 508 18 HOH HOH . 
H 7 HOH A 9 509 42 HOH HOH . 
H 7 HOH A 10 510 16 HOH HOH . 
H 7 HOH A 11 511 37 HOH HOH . 
H 7 HOH A 12 512 10 HOH HOH . 
H 7 HOH A 13 513 47 HOH HOH . 
H 7 HOH A 14 514 13 HOH HOH . 
H 7 HOH A 15 515 5 HOH HOH . 
H 7 HOH A 16 516 30 HOH HOH . 
H 7 HOH A 17 517 81 HOH HOH . 
H 7 HOH A 18 518 83 HOH HOH . 
H 7 HOH A 19 519 14 HOH HOH . 
H 7 HOH A 20 520 28 HOH HOH . 
H 7 HOH A 21 521 43 HOH HOH . 
H 7 HOH A 22 522 17 HOH HOH . 
H 7 HOH A 23 523 1 HOH HOH . 
H 7 HOH A 24 524 26 HOH HOH . 
H 7 HOH A 25 525 2 HOH HOH . 
H 7 HOH A 26 526 60 HOH HOH . 
H 7 HOH A 27 527 45 HOH HOH . 
H 7 HOH A 28 528 29 HOH HOH . 
H 7 HOH A 29 529 27 HOH HOH . 
H 7 HOH A 30 530 4 HOH HOH . 
H 7 HOH A 31 531 19 HOH HOH . 
H 7 HOH A 32 532 73 HOH HOH . 
H 7 HOH A 33 533 20 HOH HOH . 
H 7 HOH A 34 534 9 HOH HOH . 
H 7 HOH A 35 535 39 HOH HOH . 
H 7 HOH A 36 536 3 HOH HOH . 
H 7 HOH A 37 537 15 HOH HOH . 
H 7 HOH A 38 538 8 HOH HOH . 
H 7 HOH A 39 539 52 HOH HOH . 
H 7 HOH A 40 540 77 HOH HOH . 
H 7 HOH A 41 541 74 HOH HOH . 
H 7 HOH A 42 542 75 HOH HOH . 
H 7 HOH A 43 543 34 HOH HOH . 
H 7 HOH A 44 544 21 HOH HOH . 
H 7 HOH A 45 545 69 HOH HOH . 
H 7 HOH A 46 546 22 HOH HOH . 
H 7 HOH A 47 547 80 HOH HOH . 
H 7 HOH A 48 548 6 HOH HOH . 
H 7 HOH A 49 549 66 HOH HOH . 
H 7 HOH A 50 550 72 HOH HOH . 
H 7 HOH A 51 551 12 HOH HOH . 
H 7 HOH A 52 552 67 HOH HOH . 
H 7 HOH A 53 553 11 HOH HOH . 
H 7 HOH A 54 554 62 HOH HOH . 
H 7 HOH A 55 555 31 HOH HOH . 
H 7 HOH A 56 556 76 HOH HOH . 
H 7 HOH A 57 557 32 HOH HOH . 
H 7 HOH A 58 558 78 HOH HOH . 
H 7 HOH A 59 559 38 HOH HOH . 
H 7 HOH A 60 560 71 HOH HOH . 
H 7 HOH A 61 561 33 HOH HOH . 
H 7 HOH A 62 562 7 HOH HOH . 
H 7 HOH A 63 563 51 HOH HOH . 
H 7 HOH A 64 564 63 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 EDO . . . F 6 39.962 27.787 45.342 1 61.29 ? C1 EDO 405 A 1 
HETATM 2 O O1 EDO . . . F 6 39.17 28.869 45.844 1 62.39 ? O1 EDO 405 A 1 
HETATM 3 C C2 EDO . . . F 6 41.428 28.012 45.698 1 64.43 ? C2 EDO 405 A 1 
HETATM 4 O O2 EDO . . . F 6 42.17 26.809 45.466 1 65.28 ? O2 EDO 405 A 1 
#
_model_server_stats.io_time_ms              10 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           212 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           4 
#