data_5ZT9
#
_model_server_result.job_id            piRHm93Fp83lG8IEagdFww 
_model_server_result.datetime_utc      '2024-10-19 23:43:38' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5zt9 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":302}' 
#
_entry.id    5ZT9 
#
_exptl.entry_id    5ZT9 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              58.693 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'NICKEL (II) ION' 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          107.66 
_cell.angle_gamma         90 
_cell.entry_id            5ZT9 
_cell.length_a            69.73 
_cell.length_b            53.7 
_cell.length_c            78.02 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
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_symmetry.entry_id                 5ZT9 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,G 1 1 
B,E,F,H 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
? 2 E N N 
? 2 F N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A NE2 HIS 91 A HIS 79 1_555 C NI NI . A NI 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.782 ? 
metalc ? metalc2 A OE2 GLU 95 A GLU 83 1_555 C NI NI . A NI 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.493 ? 
metalc ? metalc3 A NE2 HIS 127 A HIS 115 1_555 D NI NI . A NI 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.134 ? 
metalc ? metalc4 A NE2 HIS 241 A HIS 229 1_555 D NI NI . A NI 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.338 ? 
metalc ? metalc5 C NI NI . A NI 301 1_555 G O HOH . A HOH 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.572 ? 
metalc ? metalc6 C NI NI . A NI 301 1_555 G O HOH . A HOH 424 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.902 ? 
metalc ? metalc7 D NI NI . A NI 302 1_555 G O HOH . A HOH 425 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.422 ? 
metalc ? metalc8 D NI NI . A NI 302 1_555 G O HOH . A HOH 430 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.474 ? 
metalc ? metalc9 D NI NI . A NI 302 1_555 G O HOH . A HOH 436 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.548 ? 
metalc ? metalc10 B NE2 HIS 91 B HIS 79 1_555 E NI NI . B NI 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.447 ? 
metalc ? metalc11 B OE1 GLU 95 B GLU 83 1_555 E NI NI . B NI 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.143 ? 
metalc ? metalc12 E NI NI . B NI 301 1_555 H O HOH . B HOH 413 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.495 ? 
metalc ? metalc13 E NI NI . B NI 301 1_555 H O HOH . B HOH 418 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.517 ? 
#
_chem_comp.formula           'Ni 2' 
_chem_comp.formula_weight    58.693 
_chem_comp.id                NI 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'NICKEL (II) ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     5ZT9 
_atom_sites.fract_transf_matrix[1][1]    0.014341 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.004566 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.018622 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.013451 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 NI A 1 301 1 NI NI . 
D 2 NI A 1 302 2 NI NI . 
E 2 NI B 1 301 3 NI NI . 
F 2 NI B 1 302 4 NI NI . 
G 3 HOH A 1 401 23 HOH HOH . 
G 3 HOH A 2 402 7 HOH HOH . 
G 3 HOH A 3 403 10 HOH HOH . 
G 3 HOH A 4 404 11 HOH HOH . 
G 3 HOH A 5 405 46 HOH HOH . 
G 3 HOH A 6 406 17 HOH HOH . 
G 3 HOH A 7 407 40 HOH HOH . 
G 3 HOH A 8 408 5 HOH HOH . 
G 3 HOH A 9 409 9 HOH HOH . 
G 3 HOH A 10 410 43 HOH HOH . 
G 3 HOH A 11 411 19 HOH HOH . 
G 3 HOH A 12 412 44 HOH HOH . 
G 3 HOH A 13 413 13 HOH HOH . 
G 3 HOH A 14 414 62 HOH HOH . 
G 3 HOH A 15 415 41 HOH HOH . 
G 3 HOH A 16 416 14 HOH HOH . 
G 3 HOH A 17 417 21 HOH HOH . 
G 3 HOH A 18 418 16 HOH HOH . 
G 3 HOH A 19 419 49 HOH HOH . 
G 3 HOH A 20 420 15 HOH HOH . 
G 3 HOH A 21 421 12 HOH HOH . 
G 3 HOH A 22 422 51 HOH HOH . 
G 3 HOH A 23 423 1 HOH HOH . 
G 3 HOH A 24 424 36 HOH HOH . 
G 3 HOH A 25 425 4 HOH HOH . 
G 3 HOH A 26 426 8 HOH HOH . 
G 3 HOH A 27 427 48 HOH HOH . 
G 3 HOH A 28 428 3 HOH HOH . 
G 3 HOH A 29 429 20 HOH HOH . 
G 3 HOH A 30 430 33 HOH HOH . 
G 3 HOH A 31 431 22 HOH HOH . 
G 3 HOH A 32 432 50 HOH HOH . 
G 3 HOH A 33 433 27 HOH HOH . 
G 3 HOH A 34 434 6 HOH HOH . 
G 3 HOH A 35 435 45 HOH HOH . 
G 3 HOH A 36 436 2 HOH HOH . 
G 3 HOH A 37 437 47 HOH HOH . 
G 3 HOH A 38 438 18 HOH HOH . 
G 3 HOH A 39 439 60 HOH HOH . 
G 3 HOH A 40 440 39 HOH HOH . 
H 3 HOH B 1 401 53 HOH HOH . 
H 3 HOH B 2 402 28 HOH HOH . 
H 3 HOH B 3 403 25 HOH HOH . 
H 3 HOH B 4 404 24 HOH HOH . 
H 3 HOH B 5 405 59 HOH HOH . 
H 3 HOH B 6 406 34 HOH HOH . 
H 3 HOH B 7 407 26 HOH HOH . 
H 3 HOH B 8 408 29 HOH HOH . 
H 3 HOH B 9 409 35 HOH HOH . 
H 3 HOH B 10 410 55 HOH HOH . 
H 3 HOH B 11 411 38 HOH HOH . 
H 3 HOH B 12 412 31 HOH HOH . 
H 3 HOH B 13 413 37 HOH HOH . 
H 3 HOH B 14 414 58 HOH HOH . 
H 3 HOH B 15 415 56 HOH HOH . 
H 3 HOH B 16 416 61 HOH HOH . 
H 3 HOH B 17 417 42 HOH HOH . 
H 3 HOH B 18 418 32 HOH HOH . 
H 3 HOH B 19 419 57 HOH HOH . 
H 3 HOH B 20 420 52 HOH HOH . 
H 3 HOH B 21 421 30 HOH HOH . 
H 3 HOH B 22 422 54 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           NI 
_atom_site.label_atom_id         NI 
_atom_site.label_comp_id         NI 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         D 
_atom_site.label_entity_id       2 
_atom_site.Cartn_x               7.369 
_atom_site.Cartn_y               -8.369 
_atom_site.Cartn_z               21.676 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        51.02 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          NI 
_atom_site.auth_comp_id          NI 
_atom_site.auth_seq_id           302 
_atom_site.auth_asym_id          A 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              15 
_model_server_stats.parse_time_ms           14 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           260 
_model_server_stats.encode_time_ms          9 
_model_server_stats.element_count           1 
#