data_5ZTY # _model_server_result.job_id AYD7EJaiwlxYNPoIMTZR5Q _model_server_result.datetime_utc '2024-11-04 22:39:20' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5zty # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":1204}' # _entry.id 5ZTY # _exptl.entry_id 5ZTY _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 356.54 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5ZTY _cell.length_a 34.295 _cell.length_b 106.24 _cell.length_c 183.403 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5ZTY _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 E N N ? 4 F N N # _struct_conn.conn_type_id disulf _struct_conn.details ? _struct_conn.id disulf1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 173 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 174 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id A _struct_conn.ptnr2_label_atom_id SG _struct_conn.ptnr2_label_comp_id CYS _struct_conn.ptnr2_label_seq_id 178 _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id CYS _struct_conn.ptnr2_auth_seq_id 179 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.038 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C21 H40 O4' _chem_comp.formula_weight 356.54 _chem_comp.id OLC _chem_comp.mon_nstd_flag . _chem_comp.name '(2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 1-Oleoyl-R-glycerol # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C18 C17 OLC sing 393 n n C10 C9 OLC doub 394 n n C10 C11 OLC sing 395 n n C9 C8 OLC sing 396 n n C17 C16 OLC sing 397 z n C11 C12 OLC sing 398 n n C8 C7 OLC sing 399 n n C24 C22 OLC sing 400 n n C24 O25 OLC sing 401 n n C16 C15 OLC sing 402 n n C12 C13 OLC sing 403 n n C7 C6 OLC sing 404 n n C15 C14 OLC sing 405 n n C13 C14 OLC sing 406 n n C6 C5 OLC sing 407 n n C5 C4 OLC sing 408 n n C4 C3 OLC sing 409 n n C3 C2 OLC sing 410 n n C2 C1 OLC sing 411 n n C21 C22 OLC sing 412 n n C21 O20 OLC sing 413 n n C1 O19 OLC doub 414 n n C1 O20 OLC sing 415 n n C22 O23 OLC sing 416 n n C18 H18 OLC sing 417 n n C18 H18A OLC sing 418 n n C18 H18B OLC sing 419 n n C10 H10 OLC sing 420 n n C9 H9 OLC sing 421 n n C17 H17 OLC sing 422 n n C17 H17A OLC sing 423 n n C11 H11 OLC sing 424 n n C11 H11A OLC sing 425 n n C8 H8 OLC sing 426 n n C8 H8A OLC sing 427 n n C24 H24 OLC sing 428 n n C24 H24A OLC sing 429 n n C16 H16 OLC sing 430 n n C16 H16A OLC sing 431 n n C12 H12 OLC sing 432 n n C12 H12A OLC sing 433 n n C7 H7 OLC sing 434 n n C7 H7A OLC sing 435 n n C15 H15 OLC sing 436 n n C15 H15A OLC sing 437 n n C13 H13 OLC sing 438 n n C13 H13A OLC sing 439 n n C6 H6 OLC sing 440 n n C6 H6A OLC sing 441 n n C14 H14 OLC sing 442 n n C14 H14A OLC sing 443 n n C5 H5 OLC sing 444 n n C5 H5A OLC sing 445 n n C4 H4 OLC sing 446 n n C4 H4A OLC sing 447 n n C3 H3 OLC sing 448 n n C3 H3A OLC sing 449 n n C2 H2 OLC sing 450 n n C2 H2A OLC sing 451 n n C21 H21 OLC sing 452 n n C21 H21A OLC sing 453 n n C22 H22 OLC sing 454 n n O25 HO25 OLC sing 455 n n O23 HO23 OLC sing 456 n n # _atom_sites.entry_id 5ZTY _atom_sites.fract_transf_matrix[1][1] 0.029159 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009413 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005452 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 9JU A 1 1201 1201 9JU AM7 . C 3 OLA A 1 1202 1210 OLA OLA . D 4 OLC A 1 1203 1211 OLC OLC . E 4 OLC A 1 1204 1212 OLC OLC . F 4 OLC A 1 1205 1213 OLC OLC . G 5 PEG A 1 1206 1214 PEG PEG . H 5 PEG A 1 1207 1215 PEG PEG . I 6 EPE A 1 1208 1216 EPE EPE . J 6 EPE A 1 1209 1217 EPE EPE . K 7 PG4 A 1 1210 1218 PG4 PG4 . L 8 SO4 A 1 1211 1221 SO4 SO4 . M 8 SO4 A 1 1212 1222 SO4 SO4 . N 8 SO4 A 1 1213 1223 SO4 SO4 . O 8 SO4 A 1 1214 1224 SO4 SO4 . P 8 SO4 A 1 1215 1225 SO4 SO4 . Q 9 HOH A 1 1301 1239 HOH HOH . Q 9 HOH A 2 1302 1233 HOH HOH . Q 9 HOH A 3 1303 1270 HOH HOH . Q 9 HOH A 4 1304 1261 HOH HOH . Q 9 HOH A 5 1305 1277 HOH HOH . Q 9 HOH A 6 1306 1258 HOH HOH . Q 9 HOH A 7 1307 1255 HOH HOH . Q 9 HOH A 8 1308 1257 HOH HOH . Q 9 HOH A 9 1309 1246 HOH HOH . Q 9 HOH A 10 1310 1238 HOH HOH . Q 9 HOH A 11 1311 1237 HOH HOH . Q 9 HOH A 12 1312 1260 HOH HOH . Q 9 HOH A 13 1313 1278 HOH HOH . Q 9 HOH A 14 1314 1279 HOH HOH . Q 9 HOH A 15 1315 1232 HOH HOH . Q 9 HOH A 16 1316 1245 HOH HOH . Q 9 HOH A 17 1317 1249 HOH HOH . Q 9 HOH A 18 1318 1275 HOH HOH . Q 9 HOH A 19 1319 1247 HOH HOH . Q 9 HOH A 20 1320 1263 HOH HOH . Q 9 HOH A 21 1321 1262 HOH HOH . Q 9 HOH A 22 1322 1242 HOH HOH . Q 9 HOH A 23 1323 1248 HOH HOH . Q 9 HOH A 24 1324 1274 HOH HOH . Q 9 HOH A 25 1325 1243 HOH HOH . Q 9 HOH A 26 1326 1231 HOH HOH . Q 9 HOH A 27 1327 1240 HOH HOH . Q 9 HOH A 28 1328 1241 HOH HOH . Q 9 HOH A 29 1329 1244 HOH HOH . Q 9 HOH A 30 1330 1267 HOH HOH . Q 9 HOH A 31 1331 1264 HOH HOH . Q 9 HOH A 32 1332 1268 HOH HOH . Q 9 HOH A 33 1333 1259 HOH HOH . Q 9 HOH A 34 1334 1251 HOH HOH . Q 9 HOH A 35 1335 1254 HOH HOH . Q 9 HOH A 36 1336 1235 HOH HOH . Q 9 HOH A 37 1337 1271 HOH HOH . Q 9 HOH A 38 1338 1250 HOH HOH . Q 9 HOH A 39 1339 1266 HOH HOH . Q 9 HOH A 40 1340 1234 HOH HOH . Q 9 HOH A 41 1341 1236 HOH HOH . Q 9 HOH A 42 1342 1256 HOH HOH . Q 9 HOH A 43 1343 1252 HOH HOH . Q 9 HOH A 44 1344 1253 HOH HOH . Q 9 HOH A 45 1345 1272 HOH HOH . Q 9 HOH A 46 1346 1265 HOH HOH . Q 9 HOH A 47 1347 1269 HOH HOH . Q 9 HOH A 48 1348 1273 HOH HOH . Q 9 HOH A 49 1349 1276 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C10 OLC . . . E 4 -0.33 -15.844 -44.089 1 129.07 ? C10 OLC 1204 A 1 HETATM 2 C C9 OLC . . . E 4 -0.186 -14.34 -43.864 1 128.9 ? C9 OLC 1204 A 1 HETATM 3 C C8 OLC . . . E 4 -0.541 -13.534 -45.113 1 128.56 ? C8 OLC 1204 A 1 HETATM 4 C C24 OLC . . . E 4 -0.896 -15.149 -55.624 1 132.76 ? C24 OLC 1204 A 1 HETATM 5 C C7 OLC . . . E 4 0.402 -12.356 -45.357 1 128.17 ? C7 OLC 1204 A 1 HETATM 6 C C6 OLC . . . E 4 1.506 -12.686 -46.362 1 128.38 ? C6 OLC 1204 A 1 HETATM 7 C C5 OLC . . . E 4 1.212 -12.182 -47.774 1 129.17 ? C5 OLC 1204 A 1 HETATM 8 C C4 OLC . . . E 4 0.712 -13.294 -48.696 1 130.44 ? C4 OLC 1204 A 1 HETATM 9 C C3 OLC . . . E 4 0.674 -12.877 -50.164 1 131.78 ? C3 OLC 1204 A 1 HETATM 10 C C2 OLC . . . E 4 1.604 -13.721 -51.033 1 133.17 ? C2 OLC 1204 A 1 HETATM 11 C C21 OLC . . . E 4 -0.753 -15.312 -53.109 1 133.69 ? C21 OLC 1204 A 1 HETATM 12 C C1 OLC . . . E 4 1.09 -13.916 -52.461 1 134.71 ? C1 OLC 1204 A 1 HETATM 13 C C22 OLC . . . E 4 -0.983 -16.084 -54.414 1 133.29 ? C22 OLC 1204 A 1 HETATM 14 O O19 OLC . . . E 4 1.127 -13.005 -53.228 1 135.71 ? O19 OLC 1204 A 1 HETATM 15 O O25 OLC . . . E 4 -2.177 -14.976 -56.169 1 132.09 ? O25 OLC 1204 A 1 HETATM 16 O O23 OLC . . . E 4 -0.064 -17.137 -54.549 1 133.01 ? O23 OLC 1204 A 1 HETATM 17 O O20 OLC . . . E 4 0.625 -15.182 -52.864 1 134.46 ? O20 OLC 1204 A 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 308 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 17 #