data_5ZU7 # _model_server_result.job_id aL-zlmQU3sa7uJ08NFDs3g _model_server_result.datetime_utc '2024-10-20 20:41:24' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5zu7 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":201}' # _entry.id 5ZU7 # _exptl.entry_id 5ZU7 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 347.221 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ADENOSINE MONOPHOSPHATE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 102.37 _cell.angle_gamma 90 _cell.entry_id 5ZU7 _cell.length_a 41.37 _cell.length_b 39.526 _cell.length_c 45.515 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5ZU7 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C10 H14 N5 O7 P' _chem_comp.formula_weight 347.221 _chem_comp.id AMP _chem_comp.mon_nstd_flag . _chem_comp.name 'ADENOSINE MONOPHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P O1P AMP doub 13 n n P O2P AMP sing 14 n n P O3P AMP sing 15 n n P O5' AMP sing 16 n n O2P HOP2 AMP sing 17 n n O3P HOP3 AMP sing 18 n n O5' C5' AMP sing 19 n n C5' C4' AMP sing 20 n n C5' "H5'1" AMP sing 21 n n C5' "H5'2" AMP sing 22 n n C4' O4' AMP sing 23 n n C4' C3' AMP sing 24 n n C4' H4' AMP sing 25 n n O4' C1' AMP sing 26 n n C3' O3' AMP sing 27 n n C3' C2' AMP sing 28 n n C3' H3' AMP sing 29 n n O3' HO3' AMP sing 30 n n C2' O2' AMP sing 31 n n C2' C1' AMP sing 32 n n C2' H2' AMP sing 33 n n O2' HO2' AMP sing 34 n n C1' N9 AMP sing 35 n n C1' H1' AMP sing 36 n n N9 C8 AMP sing 37 n y N9 C4 AMP sing 38 n y C8 N7 AMP doub 39 n y C8 H8 AMP sing 40 n n N7 C5 AMP sing 41 n y C5 C6 AMP sing 42 n y C5 C4 AMP doub 43 n y C6 N6 AMP sing 44 n n C6 N1 AMP doub 45 n y N6 HN61 AMP sing 46 n n N6 HN62 AMP sing 47 n n N1 C2 AMP sing 48 n y C2 N3 AMP doub 49 n y C2 H2 AMP sing 50 n n N3 C4 AMP sing 51 n y # _atom_sites.entry_id 5ZU7 _atom_sites.fract_transf_matrix[1][1] 0.024172 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.0053 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.0253 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.022493 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 AMP A 1 201 1 AMP AMP . C 3 HOH A 1 301 141 HOH HOH . C 3 HOH A 2 302 83 HOH HOH . C 3 HOH A 3 303 183 HOH HOH . C 3 HOH A 4 304 165 HOH HOH . C 3 HOH A 5 305 105 HOH HOH . C 3 HOH A 6 306 70 HOH HOH . C 3 HOH A 7 307 24 HOH HOH . C 3 HOH A 8 308 54 HOH HOH . C 3 HOH A 9 309 92 HOH HOH . C 3 HOH A 10 310 11 HOH HOH . C 3 HOH A 11 311 158 HOH HOH . C 3 HOH A 12 312 30 HOH HOH . C 3 HOH A 13 313 182 HOH HOH . C 3 HOH A 14 314 5 HOH HOH . C 3 HOH A 15 315 73 HOH HOH . C 3 HOH A 16 316 150 HOH HOH . C 3 HOH A 17 317 55 HOH HOH . C 3 HOH A 18 318 155 HOH HOH . C 3 HOH A 19 319 163 HOH HOH . C 3 HOH A 20 320 78 HOH HOH . C 3 HOH A 21 321 123 HOH HOH . C 3 HOH A 22 322 88 HOH HOH . C 3 HOH A 23 323 101 HOH HOH . C 3 HOH A 24 324 156 HOH HOH . C 3 HOH A 25 325 89 HOH HOH . C 3 HOH A 26 326 69 HOH HOH . C 3 HOH A 27 327 40 HOH HOH . C 3 HOH A 28 328 16 HOH HOH . C 3 HOH A 29 329 147 HOH HOH . C 3 HOH A 30 330 79 HOH HOH . C 3 HOH A 31 331 110 HOH HOH . C 3 HOH A 32 332 3 HOH HOH . C 3 HOH A 33 333 91 HOH HOH . C 3 HOH A 34 334 62 HOH HOH . C 3 HOH A 35 335 39 HOH HOH . C 3 HOH A 36 336 128 HOH HOH . C 3 HOH A 37 337 48 HOH HOH . C 3 HOH A 38 338 185 HOH HOH . C 3 HOH A 39 339 17 HOH HOH . C 3 HOH A 40 340 135 HOH HOH . C 3 HOH A 41 341 31 HOH HOH . C 3 HOH A 42 342 87 HOH HOH . C 3 HOH A 43 343 58 HOH HOH . C 3 HOH A 44 344 4 HOH HOH . C 3 HOH A 45 345 82 HOH HOH . C 3 HOH A 46 346 43 HOH HOH . C 3 HOH A 47 347 99 HOH HOH . C 3 HOH A 48 348 67 HOH HOH . C 3 HOH A 49 349 25 HOH HOH . C 3 HOH A 50 350 142 HOH HOH . C 3 HOH A 51 351 41 HOH HOH . C 3 HOH A 52 352 66 HOH HOH . C 3 HOH A 53 353 176 HOH HOH . C 3 HOH A 54 354 12 HOH HOH . C 3 HOH A 55 355 19 HOH HOH . C 3 HOH A 56 356 34 HOH HOH . C 3 HOH A 57 357 6 HOH HOH . C 3 HOH A 58 358 86 HOH HOH . C 3 HOH A 59 359 76 HOH HOH . C 3 HOH A 60 360 13 HOH HOH . C 3 HOH A 61 361 22 HOH HOH . C 3 HOH A 62 362 129 HOH HOH . C 3 HOH A 63 363 146 HOH HOH . C 3 HOH A 64 364 29 HOH HOH . C 3 HOH A 65 365 60 HOH HOH . C 3 HOH A 66 366 23 HOH HOH . C 3 HOH A 67 367 111 HOH HOH . C 3 HOH A 68 368 77 HOH HOH . C 3 HOH A 69 369 42 HOH HOH . C 3 HOH A 70 370 61 HOH HOH . C 3 HOH A 71 371 127 HOH HOH . C 3 HOH A 72 372 35 HOH HOH . C 3 HOH A 73 373 180 HOH HOH . C 3 HOH A 74 374 65 HOH HOH . C 3 HOH A 75 375 125 HOH HOH . C 3 HOH A 76 376 1 HOH HOH . C 3 HOH A 77 377 10 HOH HOH . C 3 HOH A 78 378 85 HOH HOH . C 3 HOH A 79 379 27 HOH HOH . C 3 HOH A 80 380 172 HOH HOH . C 3 HOH A 81 381 32 HOH HOH . C 3 HOH A 82 382 53 HOH HOH . C 3 HOH A 83 383 189 HOH HOH . C 3 HOH A 84 384 115 HOH HOH . C 3 HOH A 85 385 81 HOH HOH . C 3 HOH A 86 386 45 HOH HOH . C 3 HOH A 87 387 126 HOH HOH . C 3 HOH A 88 388 50 HOH HOH . C 3 HOH A 89 389 131 HOH HOH . C 3 HOH A 90 390 181 HOH HOH . C 3 HOH A 91 391 119 HOH HOH . C 3 HOH A 92 392 51 HOH HOH . C 3 HOH A 93 393 124 HOH HOH . C 3 HOH A 94 394 33 HOH HOH . C 3 HOH A 95 395 18 HOH HOH . C 3 HOH A 96 396 44 HOH HOH . C 3 HOH A 97 397 15 HOH HOH . C 3 HOH A 98 398 98 HOH HOH . C 3 HOH A 99 399 138 HOH HOH . C 3 HOH A 100 400 37 HOH HOH . C 3 HOH A 101 401 80 HOH HOH . C 3 HOH A 102 402 148 HOH HOH . C 3 HOH A 103 403 8 HOH HOH . C 3 HOH A 104 404 103 HOH HOH . C 3 HOH A 105 405 154 HOH HOH . C 3 HOH A 106 406 109 HOH HOH . C 3 HOH A 107 407 9 HOH HOH . C 3 HOH A 108 408 2 HOH HOH . C 3 HOH A 109 409 46 HOH HOH . C 3 HOH A 110 410 75 HOH HOH . C 3 HOH A 111 411 71 HOH HOH . C 3 HOH A 112 412 171 HOH HOH . C 3 HOH A 113 413 49 HOH HOH . C 3 HOH A 114 414 47 HOH HOH . C 3 HOH A 115 415 36 HOH HOH . C 3 HOH A 116 416 140 HOH HOH . C 3 HOH A 117 417 84 HOH HOH . C 3 HOH A 118 418 7 HOH HOH . C 3 HOH A 119 419 132 HOH HOH . C 3 HOH A 120 420 169 HOH HOH . C 3 HOH A 121 421 197 HOH HOH . C 3 HOH A 122 422 21 HOH HOH . C 3 HOH A 123 423 118 HOH HOH . C 3 HOH A 124 424 130 HOH HOH . C 3 HOH A 125 425 102 HOH HOH . C 3 HOH A 126 426 177 HOH HOH . C 3 HOH A 127 427 14 HOH HOH . C 3 HOH A 128 428 196 HOH HOH . C 3 HOH A 129 429 94 HOH HOH . C 3 HOH A 130 430 198 HOH HOH . C 3 HOH A 131 431 175 HOH HOH . C 3 HOH A 132 432 57 HOH HOH . C 3 HOH A 133 433 137 HOH HOH . C 3 HOH A 134 434 139 HOH HOH . C 3 HOH A 135 435 133 HOH HOH . C 3 HOH A 136 436 26 HOH HOH . C 3 HOH A 137 437 120 HOH HOH . C 3 HOH A 138 438 192 HOH HOH . C 3 HOH A 139 439 153 HOH HOH . C 3 HOH A 140 440 106 HOH HOH . C 3 HOH A 141 441 152 HOH HOH . C 3 HOH A 142 442 194 HOH HOH . C 3 HOH A 143 443 149 HOH HOH . C 3 HOH A 144 444 161 HOH HOH . C 3 HOH A 145 445 93 HOH HOH . C 3 HOH A 146 446 104 HOH HOH . C 3 HOH A 147 447 59 HOH HOH . C 3 HOH A 148 448 108 HOH HOH . C 3 HOH A 149 449 63 HOH HOH . C 3 HOH A 150 450 72 HOH HOH . C 3 HOH A 151 451 174 HOH HOH . C 3 HOH A 152 452 90 HOH HOH . C 3 HOH A 153 453 167 HOH HOH . C 3 HOH A 154 454 193 HOH HOH . C 3 HOH A 155 455 166 HOH HOH . C 3 HOH A 156 456 160 HOH HOH . C 3 HOH A 157 457 162 HOH HOH . C 3 HOH A 158 458 134 HOH HOH . C 3 HOH A 159 459 20 HOH HOH . C 3 HOH A 160 460 100 HOH HOH . C 3 HOH A 161 461 96 HOH HOH . C 3 HOH A 162 462 187 HOH HOH . C 3 HOH A 163 463 151 HOH HOH . C 3 HOH A 164 464 143 HOH HOH . C 3 HOH A 165 465 136 HOH HOH . C 3 HOH A 166 466 95 HOH HOH . C 3 HOH A 167 467 107 HOH HOH . C 3 HOH A 168 468 56 HOH HOH . C 3 HOH A 169 469 145 HOH HOH . C 3 HOH A 170 470 117 HOH HOH . C 3 HOH A 171 471 122 HOH HOH . C 3 HOH A 172 472 114 HOH HOH . C 3 HOH A 173 473 168 HOH HOH . C 3 HOH A 174 474 164 HOH HOH . C 3 HOH A 175 475 74 HOH HOH . C 3 HOH A 176 476 184 HOH HOH . C 3 HOH A 177 477 188 HOH HOH . C 3 HOH A 178 478 116 HOH HOH . C 3 HOH A 179 479 157 HOH HOH . C 3 HOH A 180 480 159 HOH HOH . C 3 HOH A 181 481 191 HOH HOH . C 3 HOH A 182 482 97 HOH HOH . C 3 HOH A 183 483 170 HOH HOH . C 3 HOH A 184 484 113 HOH HOH . C 3 HOH A 185 485 28 HOH HOH . C 3 HOH A 186 486 178 HOH HOH . C 3 HOH A 187 487 68 HOH HOH . C 3 HOH A 188 488 64 HOH HOH . C 3 HOH A 189 489 144 HOH HOH . C 3 HOH A 190 490 52 HOH HOH . C 3 HOH A 191 491 121 HOH HOH . C 3 HOH A 192 492 173 HOH HOH . C 3 HOH A 193 493 186 HOH HOH . C 3 HOH A 194 494 190 HOH HOH . C 3 HOH A 195 495 38 HOH HOH . C 3 HOH A 196 496 195 HOH HOH . C 3 HOH A 197 497 112 HOH HOH . C 3 HOH A 198 498 179 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P AMP . . . B 2 10.638 24.872 10.483 1 18.22 ? P AMP 201 A 1 HETATM 2 O O1P AMP . . . B 2 10.598 25.765 9.266 1 20.17 ? O1P AMP 201 A 1 HETATM 3 O O2P AMP . . . B 2 11.213 25.424 11.717 1 23.43 ? O2P AMP 201 A 1 HETATM 4 O O3P AMP . . . B 2 11.375 23.644 10.118 1 20.35 ? O3P AMP 201 A 1 HETATM 5 O O5' AMP . . . B 2 9.139 24.479 10.856 1 17.46 ? O5' AMP 201 A 1 HETATM 6 C C5' AMP . . . B 2 8.28 23.861 9.903 1 19.55 ? C5' AMP 201 A 1 HETATM 7 C C4' AMP . . . B 2 6.959 24.579 9.832 1 14.27 ? C4' AMP 201 A 1 HETATM 8 O O4' AMP . . . B 2 6.342 24.55 11.151 1 17.56 ? O4' AMP 201 A 1 HETATM 9 C C3' AMP . . . B 2 7.074 26.052 9.463 1 14.86 ? C3' AMP 201 A 1 HETATM 10 O O3' AMP . . . B 2 5.866 26.479 8.835 1 16.7 ? O3' AMP 201 A 1 HETATM 11 C C2' AMP . . . B 2 7.2 26.718 10.832 1 16.34 ? C2' AMP 201 A 1 HETATM 12 O O2' AMP . . . B 2 6.848 28.082 10.854 1 17.68 ? O2' AMP 201 A 1 HETATM 13 C C1' AMP . . . B 2 6.238 25.872 11.665 1 15.24 ? C1' AMP 201 A 1 HETATM 14 N N9 AMP . . . B 2 6.558 25.828 13.096 1 15.44 ? N9 AMP 201 A 1 HETATM 15 C C8 AMP . . . B 2 7.621 26.335 13.731 1 12.16 ? C8 AMP 201 A 1 HETATM 16 N N7 AMP . . . B 2 7.51 26.039 15.037 1 14.37 ? N7 AMP 201 A 1 HETATM 17 C C5 AMP . . . B 2 6.383 25.328 15.192 1 15.92 ? C5 AMP 201 A 1 HETATM 18 C C6 AMP . . . B 2 5.805 24.78 16.303 1 11.99 ? C6 AMP 201 A 1 HETATM 19 N N6 AMP . . . B 2 6.263 24.813 17.666 1 13.46 ? N6 AMP 201 A 1 HETATM 20 N N1 AMP . . . B 2 4.657 24.118 16.191 1 13.06 ? N1 AMP 201 A 1 HETATM 21 C C2 AMP . . . B 2 4.059 23.981 14.98 1 12.04 ? C2 AMP 201 A 1 HETATM 22 N N3 AMP . . . B 2 4.625 24.52 13.891 1 19.08 ? N3 AMP 201 A 1 HETATM 23 C C4 AMP . . . B 2 5.791 25.195 14.005 1 14.22 ? C4 AMP 201 A 1 # _model_server_stats.io_time_ms 63 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 257 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 23 #