data_5ZUA # _model_server_result.job_id uNvQ2RPxcRnuz8eqSEdbEg _model_server_result.datetime_utc '2024-10-10 05:23:07' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5zua # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":201}' # _entry.id 5ZUA # _exptl.entry_id 5ZUA _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 507.181 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 101.61 _cell.angle_gamma 90 _cell.entry_id 5ZUA _cell.length_a 41.036 _cell.length_b 39.113 _cell.length_c 45.065 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5ZUA _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C10 H16 N5 O13 P3' _chem_comp.formula_weight 507.181 _chem_comp.id ATP _chem_comp.mon_nstd_flag . _chem_comp.name "ADENOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ATP doub 70 n n PG O2G ATP sing 71 n n PG O3G ATP sing 72 n n PG O3B ATP sing 73 n n O2G HOG2 ATP sing 74 n n O3G HOG3 ATP sing 75 n n PB O1B ATP doub 76 n n PB O2B ATP sing 77 n n PB O3B ATP sing 78 n n PB O3A ATP sing 79 n n O2B HOB2 ATP sing 80 n n PA O1A ATP doub 81 n n PA O2A ATP sing 82 n n PA O3A ATP sing 83 n n PA O5' ATP sing 84 n n O2A HOA2 ATP sing 85 n n O5' C5' ATP sing 86 n n C5' C4' ATP sing 87 n n C5' "H5'1" ATP sing 88 n n C5' "H5'2" ATP sing 89 n n C4' O4' ATP sing 90 n n C4' C3' ATP sing 91 n n C4' H4' ATP sing 92 n n O4' C1' ATP sing 93 n n C3' O3' ATP sing 94 n n C3' C2' ATP sing 95 n n C3' H3' ATP sing 96 n n O3' HO3' ATP sing 97 n n C2' O2' ATP sing 98 n n C2' C1' ATP sing 99 n n C2' H2' ATP sing 100 n n O2' HO2' ATP sing 101 n n C1' N9 ATP sing 102 n n C1' H1' ATP sing 103 n n N9 C8 ATP sing 104 n y N9 C4 ATP sing 105 n y C8 N7 ATP doub 106 n y C8 H8 ATP sing 107 n n N7 C5 ATP sing 108 n y C5 C6 ATP sing 109 n y C5 C4 ATP doub 110 n y C6 N6 ATP sing 111 n n C6 N1 ATP doub 112 n y N6 HN61 ATP sing 113 n n N6 HN62 ATP sing 114 n n N1 C2 ATP sing 115 n y C2 N3 ATP doub 116 n y C2 H2 ATP sing 117 n n N3 C4 ATP sing 118 n y # _atom_sites.entry_id 5ZUA _atom_sites.fract_transf_matrix[1][1] 0.024369 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.005008 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.025567 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.022654 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ATP A 1 201 1 ATP ATP . C 3 HOH A 1 301 16 HOH HOH . C 3 HOH A 2 302 13 HOH HOH . C 3 HOH A 3 303 21 HOH HOH . C 3 HOH A 4 304 4 HOH HOH . C 3 HOH A 5 305 2 HOH HOH . C 3 HOH A 6 306 1 HOH HOH . C 3 HOH A 7 307 5 HOH HOH . C 3 HOH A 8 308 6 HOH HOH . C 3 HOH A 9 309 18 HOH HOH . C 3 HOH A 10 310 7 HOH HOH . C 3 HOH A 11 311 22 HOH HOH . C 3 HOH A 12 312 8 HOH HOH . C 3 HOH A 13 313 20 HOH HOH . C 3 HOH A 14 314 12 HOH HOH . C 3 HOH A 15 315 3 HOH HOH . C 3 HOH A 16 316 11 HOH HOH . C 3 HOH A 17 317 9 HOH HOH . C 3 HOH A 18 318 14 HOH HOH . C 3 HOH A 19 319 10 HOH HOH . C 3 HOH A 20 320 17 HOH HOH . C 3 HOH A 21 321 23 HOH HOH . C 3 HOH A 22 322 19 HOH HOH . C 3 HOH A 23 323 15 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ATP . . . B 2 6.072 9.483 10.399 1 76.61 ? PG ATP 201 A 1 HETATM 2 O O1G ATP . . . B 2 6.425 9.818 8.966 1 82.61 ? O1G ATP 201 A 1 HETATM 3 O O2G ATP . . . B 2 7.36 9.17 11.152 1 65.32 ? O2G ATP 201 A 1 HETATM 4 O O3G ATP . . . B 2 5.384 10.668 11.044 1 82.98 ? O3G ATP 201 A 1 HETATM 5 P PB ATP . . . B 2 4.732 7.147 11.652 1 56.93 ? PB ATP 201 A 1 HETATM 6 O O1B ATP . . . B 2 5.957 6.885 12.47 1 60.46 ? O1B ATP 201 A 1 HETATM 7 O O2B ATP . . . B 2 3.737 7.797 12.558 1 48.26 ? O2B ATP 201 A 1 HETATM 8 O O3B ATP . . . B 2 5.074 8.158 10.362 1 58.54 ? O3B ATP 201 A 1 HETATM 9 P PA ATP . . . B 2 4.99 4.253 11.636 1 39.2 ? PA ATP 201 A 1 HETATM 10 O O1A ATP . . . B 2 4.343 3.11 10.879 1 47.4 ? O1A ATP 201 A 1 HETATM 11 O O2A ATP . . . B 2 4.71 4.018 13.106 1 48.56 ? O2A ATP 201 A 1 HETATM 12 O O3A ATP . . . B 2 4.262 5.651 11.129 1 49.99 ? O3A ATP 201 A 1 HETATM 13 O O5' ATP . . . B 2 6.633 4.248 11.299 1 41.42 ? O5' ATP 201 A 1 HETATM 14 C C5' ATP . . . B 2 7.553 3.455 12.065 1 37.04 ? C5' ATP 201 A 1 HETATM 15 C C4' ATP . . . B 2 8.916 4.131 12.212 1 32.3 ? C4' ATP 201 A 1 HETATM 16 O O4' ATP . . . B 2 9.612 3.996 11.115 1 39.61 ? O4' ATP 201 A 1 HETATM 17 C C3' ATP . . . B 2 8.79 5.769 12.481 1 40.48 ? C3' ATP 201 A 1 HETATM 18 O O3' ATP . . . B 2 9.825 6.198 13.443 1 35.96 ? O3' ATP 201 A 1 HETATM 19 C C2' ATP . . . B 2 8.871 6.337 11.358 1 40.65 ? C2' ATP 201 A 1 HETATM 20 O O2' ATP . . . B 2 9.455 7.733 11.368 1 41.35 ? O2' ATP 201 A 1 HETATM 21 C C1' ATP . . . B 2 9.77 5.369 10.474 1 41.69 ? C1' ATP 201 A 1 HETATM 22 N N9 ATP . . . B 2 9.312 5.391 9.212 1 43.62 ? N9 ATP 201 A 1 HETATM 23 C C8 ATP . . . B 2 8.243 5.994 8.686 1 41.76 ? C8 ATP 201 A 1 HETATM 24 N N7 ATP . . . B 2 8.231 5.704 7.374 1 40.05 ? N7 ATP 201 A 1 HETATM 25 C C5 ATP . . . B 2 9.302 4.924 7.1 1 39.99 ? C5 ATP 201 A 1 HETATM 26 C C6 ATP . . . B 2 9.758 4.346 5.927 1 34.2 ? C6 ATP 201 A 1 HETATM 27 N N6 ATP . . . B 2 9.32 4.312 4.549 1 30.91 ? N6 ATP 201 A 1 HETATM 28 N N1 ATP . . . B 2 10.865 3.608 5.942 1 34.26 ? N1 ATP 201 A 1 HETATM 29 C C2 ATP . . . B 2 11.552 3.412 7.092 1 30.77 ? C2 ATP 201 A 1 HETATM 30 N N3 ATP . . . B 2 11.108 3.977 8.248 1 33.73 ? N3 ATP 201 A 1 HETATM 31 C C4 ATP . . . B 2 9.982 4.728 8.237 1 41.52 ? C4 ATP 201 A 1 # _model_server_stats.io_time_ms 36 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 249 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 31 #