data_5ZUE # _model_server_result.job_id 8HylEerUO_61rytb69ZNdw _model_server_result.datetime_utc '2024-11-26 16:57:45' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5zue # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 5ZUE # _exptl.entry_id 5ZUE _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 523.18 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "GUANOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5ZUE _cell.length_a 100.526 _cell.length_b 100.526 _cell.length_c 138.341 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5ZUE _symmetry.cell_setting ? _symmetry.Int_Tables_number 179 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 65 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C10 H16 N5 O14 P3' _chem_comp.formula_weight 523.18 _chem_comp.id GTP _chem_comp.mon_nstd_flag n _chem_comp.name "GUANOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G GTP doub 129 n n PG O2G GTP sing 130 n n PG O3G GTP sing 131 n n PG O3B GTP sing 132 n n O2G HOG2 GTP sing 133 n n O3G HOG3 GTP sing 134 n n O3B PB GTP sing 135 n n PB O1B GTP doub 136 n n PB O2B GTP sing 137 n n PB O3A GTP sing 138 n n O2B HOB2 GTP sing 139 n n O3A PA GTP sing 140 n n PA O1A GTP doub 141 n n PA O2A GTP sing 142 n n PA O5' GTP sing 143 n n O2A HOA2 GTP sing 144 n n O5' C5' GTP sing 145 n n C5' C4' GTP sing 146 n n C5' H5' GTP sing 147 n n C5' "H5''" GTP sing 148 n n C4' O4' GTP sing 149 n n C4' C3' GTP sing 150 n n C4' H4' GTP sing 151 n n O4' C1' GTP sing 152 n n C3' O3' GTP sing 153 n n C3' C2' GTP sing 154 n n C3' H3' GTP sing 155 n n O3' HO3' GTP sing 156 n n C2' O2' GTP sing 157 n n C2' C1' GTP sing 158 n n C2' H2' GTP sing 159 n n O2' HO2' GTP sing 160 n n C1' N9 GTP sing 161 n n C1' H1' GTP sing 162 n n N9 C8 GTP sing 163 n y N9 C4 GTP sing 164 n y C8 N7 GTP doub 165 n y C8 H8 GTP sing 166 n n N7 C5 GTP sing 167 n y C5 C6 GTP sing 168 n n C5 C4 GTP doub 169 n y C6 O6 GTP doub 170 n n C6 N1 GTP sing 171 n n N1 C2 GTP sing 172 n n N1 HN1 GTP sing 173 n n C2 N2 GTP sing 174 n n C2 N3 GTP doub 175 n n N2 HN21 GTP sing 176 n n N2 HN22 GTP sing 177 n n N3 C4 GTP sing 178 n n # _atom_sites.entry_id 5ZUE _atom_sites.fract_transf_matrix[1][1] 0.009948 _atom_sites.fract_transf_matrix[1][2] 0.005743 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011487 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007229 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # _pdbx_nonpoly_scheme.asym_id B _pdbx_nonpoly_scheme.entity_id 2 _pdbx_nonpoly_scheme.mon_id GTP _pdbx_nonpoly_scheme.pdb_strand_id A _pdbx_nonpoly_scheme.ndb_seq_num 1 _pdbx_nonpoly_scheme.pdb_seq_num 401 _pdbx_nonpoly_scheme.auth_seq_num 401 _pdbx_nonpoly_scheme.pdb_mon_id GTP _pdbx_nonpoly_scheme.auth_mon_id GTP _pdbx_nonpoly_scheme.pdb_ins_code . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG GTP . . . B 2 -5.714 48.736 16.319 1 88.98 ? PG GTP 401 A 1 HETATM 2 O O1G GTP . . . B 2 -5.554 49.74 15.201 1 67.12 ? O1G GTP 401 A 1 HETATM 3 O O2G GTP . . . B 2 -4.42 47.992 16.55 1 67.44 ? O2G GTP 401 A 1 HETATM 4 O O3G GTP . . . B 2 -6.14 49.446 17.581 1 75.36 ? O3G GTP 401 A 1 HETATM 5 O O3B GTP . . . B 2 -6.855 47.666 15.94 1 92 ? O3B GTP 401 A 1 HETATM 6 P PB GTP . . . B 2 -7.063 47.199 14.414 1 50.3 ? PB GTP 401 A 1 HETATM 7 O O1B GTP . . . B 2 -7.081 48.409 13.511 1 79.32 ? O1B GTP 401 A 1 HETATM 8 O O2B GTP . . . B 2 -8.351 46.419 14.305 1 84.64 ? O2B GTP 401 A 1 HETATM 9 O O3A GTP . . . B 2 -5.777 46.291 14.064 1 81.97 ? O3A GTP 401 A 1 HETATM 10 P PA GTP . . . B 2 -5.551 45.793 12.55 1 72.25 ? PA GTP 401 A 1 HETATM 11 O O1A GTP . . . B 2 -6.369 46.647 11.611 1 78.92 ? O1A GTP 401 A 1 HETATM 12 O O2A GTP . . . B 2 -4.082 45.857 12.199 1 78.03 ? O2A GTP 401 A 1 HETATM 13 O O5' GTP . . . B 2 -6.048 44.261 12.523 1 80.92 ? O5' GTP 401 A 1 HETATM 14 C C5' GTP . . . B 2 -5.394 43.276 13.292 1 80.03 ? C5' GTP 401 A 1 HETATM 15 C C4' GTP . . . B 2 -5.016 42.107 12.389 1 66.1 ? C4' GTP 401 A 1 HETATM 16 O O4' GTP . . . B 2 -5.444 42.345 11.062 1 59 ? O4' GTP 401 A 1 HETATM 17 C C3' GTP . . . B 2 -3.517 41.889 12.292 1 70.63 ? C3' GTP 401 A 1 HETATM 18 O O3' GTP . . . B 2 -3.043 41.039 13.308 1 66.6 ? O3' GTP 401 A 1 HETATM 19 C C2' GTP . . . B 2 -3.335 41.28 10.917 1 70.95 ? C2' GTP 401 A 1 HETATM 20 O O2' GTP . . . B 2 -3.338 39.874 10.995 1 66.92 ? O2' GTP 401 A 1 HETATM 21 C C1' GTP . . . B 2 -4.535 41.787 10.13 1 64.47 ? C1' GTP 401 A 1 HETATM 22 N N9 GTP . . . B 2 -4.154 42.837 9.168 1 86.87 ? N9 GTP 401 A 1 HETATM 23 C C8 GTP . . . B 2 -3.222 43.826 9.349 1 77.28 ? C8 GTP 401 A 1 HETATM 24 N N7 GTP . . . B 2 -3.184 44.582 8.226 1 71.5 ? N7 GTP 401 A 1 HETATM 25 C C5 GTP . . . B 2 -4.08 44.096 7.334 1 97.95 ? C5 GTP 401 A 1 HETATM 26 C C6 GTP . . . B 2 -4.445 44.485 6.046 1 89.44 ? C6 GTP 401 A 1 HETATM 27 O O6 GTP . . . B 2 -3.915 45.455 5.5 1 81.71 ? O6 GTP 401 A 1 HETATM 28 N N1 GTP . . . B 2 -5.417 43.766 5.378 1 91.84 ? N1 GTP 401 A 1 HETATM 29 C C2 GTP . . . B 2 -6.014 42.679 5.986 1 93.08 ? C2 GTP 401 A 1 HETATM 30 N N2 GTP . . . B 2 -6.951 41.985 5.347 1 89.56 ? N2 GTP 401 A 1 HETATM 31 N N3 GTP . . . B 2 -5.647 42.303 7.259 1 79.84 ? N3 GTP 401 A 1 HETATM 32 C C4 GTP . . . B 2 -4.697 42.999 7.921 1 89.35 ? C4 GTP 401 A 1 HETATM 33 H H4' GTP . . . B 2 -5.499 41.238 12.835 1 79.58 ? H4' GTP 401 A 1 HETATM 34 H H3' GTP . . . B 2 -2.947 42.809 12.425 1 85.01 ? H3' GTP 401 A 1 HETATM 35 H HO3' GTP . . . B 2 -2.604 40.261 12.905 1 80.18 ? HO3' GTP 401 A 1 HETATM 36 H H2' GTP . . . B 2 -2.387 41.55 10.452 1 85.4 ? H2' GTP 401 A 1 HETATM 37 H HO2' GTP . . . B 2 -4.171 39.527 10.613 1 80.56 ? HO2' GTP 401 A 1 HETATM 38 H H1' GTP . . . B 2 -4.96 40.951 9.574 1 77.61 ? H1' GTP 401 A 1 HETATM 39 H H8 GTP . . . B 2 -2.617 43.979 10.242 1 92.99 ? H8 GTP 401 A 1 HETATM 40 H HN1 GTP . . . B 2 -5.7 44.043 4.417 1 110.47 ? HN1 GTP 401 A 1 HETATM 41 H HN21 GTP . . . B 2 -7.388 41.188 5.797 1 107.73 ? HN21 GTP 401 A 1 HETATM 42 H HN22 GTP . . . B 2 -7.229 42.253 4.408 1 107.73 ? HN22 GTP 401 A 1 # _model_server_stats.io_time_ms 18 _model_server_stats.parse_time_ms 20 _model_server_stats.create_model_time_ms 49 _model_server_stats.query_time_ms 412 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 42 #