data_5ZUI # _model_server_result.job_id 9VrintqYERGsusYKuc3aag _model_server_result.datetime_utc '2024-10-19 11:48:34' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5zui # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":902}' # _entry.id 5ZUI # _exptl.entry_id 5ZUI _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 427.201 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-DIPHOSPHATE" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5ZUI _cell.length_a 131.182 _cell.length_b 131.182 _cell.length_c 137.042 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5ZUI _symmetry.cell_setting ? _symmetry.Int_Tables_number 170 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 65' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4,5,6 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -y,x-y,z+2/3 -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 0 0 91.361333 3 'crystal symmetry operation' 3_555 -x+y,-x,z+1/3 -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 0 0 45.680667 4 'crystal symmetry operation' 4_555 -x,-y,z+1/2 -1 0 0 0 -1 0 0 0 1 0 0 68.521 5 'crystal symmetry operation' 5_555 y,-x+y,z+1/6 0.5 0.866025 0 -0.866025 0.5 0 0 0 1 0 0 22.840333 6 'crystal symmetry operation' 6_555 x-y,x,z+5/6 0.5 -0.866025 0 0.866025 0.5 0 0 0 1 0 0 114.201667 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N # _chem_comp.formula 'C10 H15 N5 O10 P2' _chem_comp.formula_weight 427.201 _chem_comp.id ADP _chem_comp.mon_nstd_flag n _chem_comp.name "ADENOSINE-5'-DIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PB O1B ADP doub 1 n n PB O2B ADP sing 2 n n PB O3B ADP sing 3 n n PB O3A ADP sing 4 n n O2B HOB2 ADP sing 5 n n O3B HOB3 ADP sing 6 n n PA O1A ADP doub 7 n n PA O2A ADP sing 8 n n PA O3A ADP sing 9 n n PA O5' ADP sing 10 n n O2A HOA2 ADP sing 11 n n O5' C5' ADP sing 12 n n C5' C4' ADP sing 13 n n C5' "H5'1" ADP sing 14 n n C5' "H5'2" ADP sing 15 n n C4' O4' ADP sing 16 n n C4' C3' ADP sing 17 n n C4' H4' ADP sing 18 n n O4' C1' ADP sing 19 n n C3' O3' ADP sing 20 n n C3' C2' ADP sing 21 n n C3' H3' ADP sing 22 n n O3' HO3' ADP sing 23 n n C2' O2' ADP sing 24 n n C2' C1' ADP sing 25 n n C2' H2' ADP sing 26 n n O2' HO2' ADP sing 27 n n C1' N9 ADP sing 28 n n C1' H1' ADP sing 29 n n N9 C8 ADP sing 30 n y N9 C4 ADP sing 31 n y C8 N7 ADP doub 32 n y C8 H8 ADP sing 33 n n N7 C5 ADP sing 34 n y C5 C6 ADP sing 35 n y C5 C4 ADP doub 36 n y C6 N6 ADP sing 37 n n C6 N1 ADP doub 38 n y N6 HN61 ADP sing 39 n n N6 HN62 ADP sing 40 n n N1 C2 ADP sing 41 n y C2 N3 ADP doub 42 n y C2 H2 ADP sing 43 n n N3 C4 ADP sing 44 n y # _atom_sites.entry_id 5ZUI _atom_sites.fract_transf_matrix[1][1] 0.007623 _atom_sites.fract_transf_matrix[1][2] 0.004401 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008802 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007297 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ADP A 1 901 901 ADP ADP . C 2 ADP A 1 902 902 ADP ADP . D 3 SO4 A 1 903 903 SO4 SO4 . E 3 SO4 A 1 904 904 SO4 SO4 . F 3 SO4 A 1 905 905 SO4 SO4 . G 3 SO4 A 1 906 906 SO4 SO4 . H 3 SO4 A 1 907 907 SO4 SO4 . I 3 SO4 A 1 908 908 SO4 SO4 . J 4 HOH A 1 1001 1004 HOH HOH . J 4 HOH A 2 1002 1002 HOH HOH . J 4 HOH A 3 1003 1001 HOH HOH . J 4 HOH A 4 1004 1005 HOH HOH . J 4 HOH A 5 1005 1003 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PB ADP . . . C 2 -2.382 26.455 83.163 1 67.58 ? PB ADP 902 A 1 HETATM 2 O O1B ADP . . . C 2 -1.29 25.92 82.268 1 72.46 ? O1B ADP 902 A 1 HETATM 3 O O2B ADP . . . C 2 -3.397 25.419 83.586 1 66.43 ? O2B ADP 902 A 1 HETATM 4 O O3B ADP . . . C 2 -1.863 27.33 84.28 1 67.26 ? O3B ADP 902 A 1 HETATM 5 P PA ADP . . . C 2 -2.604 28.149 80.907 1 63.83 ? PA ADP 902 A 1 HETATM 6 O O1A ADP . . . C 2 -2.592 27.095 79.823 1 62.74 ? O1A ADP 902 A 1 HETATM 7 O O2A ADP . . . C 2 -1.342 28.884 81.265 1 75.6 ? O2A ADP 902 A 1 HETATM 8 O O3A ADP . . . C 2 -3.221 27.465 82.231 1 66.63 ? O3A ADP 902 A 1 HETATM 9 O O5' ADP . . . C 2 -3.745 29.224 80.536 1 62.91 ? O5' ADP 902 A 1 HETATM 10 C C5' ADP . . . C 2 -4.706 28.944 79.516 1 58.9 ? C5' ADP 902 A 1 HETATM 11 C C4' ADP . . . C 2 -5.147 30.239 78.848 1 64.48 ? C4' ADP 902 A 1 HETATM 12 O O4' ADP . . . C 2 -5.52 31.204 79.836 1 63.7 ? O4' ADP 902 A 1 HETATM 13 C C3' ADP . . . C 2 -4.02 30.841 78.027 1 72.72 ? C3' ADP 902 A 1 HETATM 14 O O3' ADP . . . C 2 -4.239 30.619 76.631 1 81.42 ? O3' ADP 902 A 1 HETATM 15 C C2' ADP . . . C 2 -4.078 32.32 78.328 1 69.06 ? C2' ADP 902 A 1 HETATM 16 O O2' ADP . . . C 2 -4.74 32.968 77.239 1 74.8 ? O2' ADP 902 A 1 HETATM 17 C C1' ADP . . . C 2 -4.924 32.475 79.581 1 53.15 ? C1' ADP 902 A 1 HETATM 18 N N9 ADP . . . C 2 -4.062 32.84 80.738 1 62.43 ? N9 ADP 902 A 1 HETATM 19 C C8 ADP . . . C 2 -3.967 32.149 81.891 1 62.89 ? C8 ADP 902 A 1 HETATM 20 N N7 ADP . . . C 2 -3.102 32.742 82.758 1 58.49 ? N7 ADP 902 A 1 HETATM 21 C C5 ADP . . . C 2 -2.626 33.846 82.159 1 46.78 ? C5 ADP 902 A 1 HETATM 22 C C6 ADP . . . C 2 -1.676 34.922 82.518 1 52.66 ? C6 ADP 902 A 1 HETATM 23 N N6 ADP . . . C 2 -1.049 34.936 83.718 1 56.29 ? N6 ADP 902 A 1 HETATM 24 N N1 ADP . . . C 2 -1.455 35.891 81.603 1 60.18 ? N1 ADP 902 A 1 HETATM 25 C C2 ADP . . . C 2 -2.076 35.893 80.406 1 65.47 ? C2 ADP 902 A 1 HETATM 26 N N3 ADP . . . C 2 -2.95 34.946 80.014 1 60.1 ? N3 ADP 902 A 1 HETATM 27 C C4 ADP . . . C 2 -3.263 33.912 80.832 1 59.59 ? C4 ADP 902 A 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 326 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 27 #