data_5ZUN # _model_server_result.job_id VPSaFEgZbWD9u_Eq3Ola_Q _model_server_result.datetime_utc '2024-11-05 10:31:04' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5zun # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":405}' # _entry.id 5ZUN # _exptl.entry_id 5ZUN _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 8 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5ZUN _cell.length_a 95.149 _cell.length_b 127.224 _cell.length_c 60.25 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5ZUN _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 E N N ? 4 F N N ? 4 G N N ? 4 H N N ? 4 I N N ? 4 J N N ? 4 K N N # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 142 n n C1 C2 EDO sing 143 n n C1 H11 EDO sing 144 n n C1 H12 EDO sing 145 n n O1 HO1 EDO sing 146 n n C2 O2 EDO sing 147 n n C2 H21 EDO sing 148 n n C2 H22 EDO sing 149 n n O2 HO2 EDO sing 150 n n # _atom_sites.entry_id 5ZUN _atom_sites.fract_transf_matrix[1][1] 0.01051 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00786 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.016598 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 9JX A 1 401 1 9JX LIG . C 3 PG4 A 1 402 1 PG4 PG4 . D 4 EDO A 1 403 2 EDO EDO . E 4 EDO A 1 404 3 EDO EDO . F 4 EDO A 1 405 4 EDO EDO . G 4 EDO A 1 406 5 EDO EDO . H 4 EDO A 1 407 6 EDO EDO . I 4 EDO A 1 408 7 EDO EDO . J 4 EDO A 1 409 8 EDO EDO . K 4 EDO A 1 410 9 EDO EDO . L 5 CL A 1 411 11 CL CL . M 6 HOH A 1 501 129 HOH HOH . M 6 HOH A 2 502 227 HOH HOH . M 6 HOH A 3 503 253 HOH HOH . M 6 HOH A 4 504 184 HOH HOH . M 6 HOH A 5 505 212 HOH HOH . M 6 HOH A 6 506 219 HOH HOH . M 6 HOH A 7 507 214 HOH HOH . M 6 HOH A 8 508 127 HOH HOH . M 6 HOH A 9 509 274 HOH HOH . M 6 HOH A 10 510 117 HOH HOH . M 6 HOH A 11 511 140 HOH HOH . M 6 HOH A 12 512 208 HOH HOH . M 6 HOH A 13 513 290 HOH HOH . M 6 HOH A 14 514 49 HOH HOH . M 6 HOH A 15 515 109 HOH HOH . M 6 HOH A 16 516 166 HOH HOH . M 6 HOH A 17 517 154 HOH HOH . M 6 HOH A 18 518 228 HOH HOH . M 6 HOH A 19 519 124 HOH HOH . M 6 HOH A 20 520 41 HOH HOH . M 6 HOH A 21 521 244 HOH HOH . M 6 HOH A 22 522 61 HOH HOH . M 6 HOH A 23 523 287 HOH HOH . M 6 HOH A 24 524 120 HOH HOH . M 6 HOH A 25 525 122 HOH HOH . M 6 HOH A 26 526 52 HOH HOH . M 6 HOH A 27 527 48 HOH HOH . M 6 HOH A 28 528 103 HOH HOH . M 6 HOH A 29 529 202 HOH HOH . M 6 HOH A 30 530 151 HOH HOH . M 6 HOH A 31 531 38 HOH HOH . M 6 HOH A 32 532 78 HOH HOH . M 6 HOH A 33 533 14 HOH HOH . M 6 HOH A 34 534 150 HOH HOH . M 6 HOH A 35 535 58 HOH HOH . M 6 HOH A 36 536 226 HOH HOH . M 6 HOH A 37 537 146 HOH HOH . M 6 HOH A 38 538 207 HOH HOH . M 6 HOH A 39 539 51 HOH HOH . M 6 HOH A 40 540 221 HOH HOH . M 6 HOH A 41 541 296 HOH HOH . M 6 HOH A 42 542 1 HOH HOH . M 6 HOH A 43 543 88 HOH HOH . M 6 HOH A 44 544 57 HOH HOH . M 6 HOH A 45 545 85 HOH HOH . M 6 HOH A 46 546 37 HOH HOH . M 6 HOH A 47 547 53 HOH HOH . M 6 HOH A 48 548 147 HOH HOH . M 6 HOH A 49 549 83 HOH HOH . M 6 HOH A 50 550 170 HOH HOH . M 6 HOH A 51 551 174 HOH HOH . M 6 HOH A 52 552 42 HOH HOH . M 6 HOH A 53 553 105 HOH HOH . M 6 HOH A 54 554 77 HOH HOH . M 6 HOH A 55 555 257 HOH HOH . M 6 HOH A 56 556 16 HOH HOH . M 6 HOH A 57 557 162 HOH HOH . M 6 HOH A 58 558 24 HOH HOH . M 6 HOH A 59 559 108 HOH HOH . M 6 HOH A 60 560 96 HOH HOH . M 6 HOH A 61 561 75 HOH HOH . M 6 HOH A 62 562 114 HOH HOH . M 6 HOH A 63 563 141 HOH HOH . M 6 HOH A 64 564 12 HOH HOH . M 6 HOH A 65 565 69 HOH HOH . M 6 HOH A 66 566 248 HOH HOH . M 6 HOH A 67 567 195 HOH HOH . M 6 HOH A 68 568 30 HOH HOH . M 6 HOH A 69 569 277 HOH HOH . M 6 HOH A 70 570 18 HOH HOH . M 6 HOH A 71 571 218 HOH HOH . M 6 HOH A 72 572 118 HOH HOH . M 6 HOH A 73 573 235 HOH HOH . M 6 HOH A 74 574 298 HOH HOH . M 6 HOH A 75 575 32 HOH HOH . M 6 HOH A 76 576 186 HOH HOH . M 6 HOH A 77 577 7 HOH HOH . M 6 HOH A 78 578 55 HOH HOH . M 6 HOH A 79 579 205 HOH HOH . M 6 HOH A 80 580 36 HOH HOH . M 6 HOH A 81 581 104 HOH HOH . M 6 HOH A 82 582 64 HOH HOH . M 6 HOH A 83 583 143 HOH HOH . M 6 HOH A 84 584 159 HOH HOH . M 6 HOH A 85 585 5 HOH HOH . M 6 HOH A 86 586 80 HOH HOH . M 6 HOH A 87 587 54 HOH HOH . M 6 HOH A 88 588 8 HOH HOH . M 6 HOH A 89 589 40 HOH HOH . M 6 HOH A 90 590 15 HOH HOH . M 6 HOH A 91 591 97 HOH HOH . M 6 HOH A 92 592 87 HOH HOH . M 6 HOH A 93 593 93 HOH HOH . M 6 HOH A 94 594 136 HOH HOH . M 6 HOH A 95 595 4 HOH HOH . M 6 HOH A 96 596 173 HOH HOH . M 6 HOH A 97 597 167 HOH HOH . M 6 HOH A 98 598 148 HOH HOH . M 6 HOH A 99 599 123 HOH HOH . M 6 HOH A 100 600 56 HOH HOH . M 6 HOH A 101 601 59 HOH HOH . M 6 HOH A 102 602 33 HOH HOH . M 6 HOH A 103 603 155 HOH HOH . M 6 HOH A 104 604 11 HOH HOH . M 6 HOH A 105 605 110 HOH HOH . M 6 HOH A 106 606 142 HOH HOH . M 6 HOH A 107 607 126 HOH HOH . M 6 HOH A 108 608 116 HOH HOH . M 6 HOH A 109 609 28 HOH HOH . M 6 HOH A 110 610 185 HOH HOH . M 6 HOH A 111 611 234 HOH HOH . M 6 HOH A 112 612 98 HOH HOH . M 6 HOH A 113 613 17 HOH HOH . M 6 HOH A 114 614 9 HOH HOH . M 6 HOH A 115 615 19 HOH HOH . M 6 HOH A 116 616 29 HOH HOH . M 6 HOH A 117 617 260 HOH HOH . M 6 HOH A 118 618 152 HOH HOH . M 6 HOH A 119 619 6 HOH HOH . M 6 HOH A 120 620 204 HOH HOH . M 6 HOH A 121 621 89 HOH HOH . M 6 HOH A 122 622 21 HOH HOH . M 6 HOH A 123 623 144 HOH HOH . M 6 HOH A 124 624 10 HOH HOH . M 6 HOH A 125 625 157 HOH HOH . M 6 HOH A 126 626 297 HOH HOH . M 6 HOH A 127 627 115 HOH HOH . M 6 HOH A 128 628 183 HOH HOH . M 6 HOH A 129 629 73 HOH HOH . M 6 HOH A 130 630 25 HOH HOH . M 6 HOH A 131 631 94 HOH HOH . M 6 HOH A 132 632 72 HOH HOH . M 6 HOH A 133 633 171 HOH HOH . M 6 HOH A 134 634 258 HOH HOH . M 6 HOH A 135 635 45 HOH HOH . M 6 HOH A 136 636 79 HOH HOH . M 6 HOH A 137 637 135 HOH HOH . M 6 HOH A 138 638 220 HOH HOH . M 6 HOH A 139 639 182 HOH HOH . M 6 HOH A 140 640 107 HOH HOH . M 6 HOH A 141 641 2 HOH HOH . M 6 HOH A 142 642 66 HOH HOH . M 6 HOH A 143 643 177 HOH HOH . M 6 HOH A 144 644 68 HOH HOH . M 6 HOH A 145 645 163 HOH HOH . M 6 HOH A 146 646 101 HOH HOH . M 6 HOH A 147 647 74 HOH HOH . M 6 HOH A 148 648 262 HOH HOH . M 6 HOH A 149 649 280 HOH HOH . M 6 HOH A 150 650 63 HOH HOH . M 6 HOH A 151 651 263 HOH HOH . M 6 HOH A 152 652 272 HOH HOH . M 6 HOH A 153 653 160 HOH HOH . M 6 HOH A 154 654 132 HOH HOH . M 6 HOH A 155 655 26 HOH HOH . M 6 HOH A 156 656 187 HOH HOH . M 6 HOH A 157 657 217 HOH HOH . M 6 HOH A 158 658 3 HOH HOH . M 6 HOH A 159 659 164 HOH HOH . M 6 HOH A 160 660 67 HOH HOH . M 6 HOH A 161 661 65 HOH HOH . M 6 HOH A 162 662 43 HOH HOH . M 6 HOH A 163 663 111 HOH HOH . M 6 HOH A 164 664 259 HOH HOH . M 6 HOH A 165 665 245 HOH HOH . M 6 HOH A 166 666 76 HOH HOH . M 6 HOH A 167 667 197 HOH HOH . M 6 HOH A 168 668 22 HOH HOH . M 6 HOH A 169 669 13 HOH HOH . M 6 HOH A 170 670 44 HOH HOH . M 6 HOH A 171 671 243 HOH HOH . M 6 HOH A 172 672 283 HOH HOH . M 6 HOH A 173 673 100 HOH HOH . M 6 HOH A 174 674 46 HOH HOH . M 6 HOH A 175 675 249 HOH HOH . M 6 HOH A 176 676 145 HOH HOH . M 6 HOH A 177 677 70 HOH HOH . M 6 HOH A 178 678 39 HOH HOH . M 6 HOH A 179 679 128 HOH HOH . M 6 HOH A 180 680 60 HOH HOH . M 6 HOH A 181 681 194 HOH HOH . M 6 HOH A 182 682 50 HOH HOH . M 6 HOH A 183 683 34 HOH HOH . M 6 HOH A 184 684 82 HOH HOH . M 6 HOH A 185 685 86 HOH HOH . M 6 HOH A 186 686 130 HOH HOH . M 6 HOH A 187 687 92 HOH HOH . M 6 HOH A 188 688 99 HOH HOH . M 6 HOH A 189 689 20 HOH HOH . M 6 HOH A 190 690 35 HOH HOH . M 6 HOH A 191 691 295 HOH HOH . M 6 HOH A 192 692 137 HOH HOH . M 6 HOH A 193 693 134 HOH HOH . M 6 HOH A 194 694 168 HOH HOH . M 6 HOH A 195 695 138 HOH HOH . M 6 HOH A 196 696 27 HOH HOH . M 6 HOH A 197 697 112 HOH HOH . M 6 HOH A 198 698 215 HOH HOH . M 6 HOH A 199 699 225 HOH HOH . M 6 HOH A 200 700 47 HOH HOH . M 6 HOH A 201 701 95 HOH HOH . M 6 HOH A 202 702 271 HOH HOH . M 6 HOH A 203 703 238 HOH HOH . M 6 HOH A 204 704 224 HOH HOH . M 6 HOH A 205 705 240 HOH HOH . M 6 HOH A 206 706 161 HOH HOH . M 6 HOH A 207 707 256 HOH HOH . M 6 HOH A 208 708 189 HOH HOH . M 6 HOH A 209 709 172 HOH HOH . M 6 HOH A 210 710 106 HOH HOH . M 6 HOH A 211 711 232 HOH HOH . M 6 HOH A 212 712 31 HOH HOH . M 6 HOH A 213 713 139 HOH HOH . M 6 HOH A 214 714 203 HOH HOH . M 6 HOH A 215 715 252 HOH HOH . M 6 HOH A 216 716 156 HOH HOH . M 6 HOH A 217 717 229 HOH HOH . M 6 HOH A 218 718 62 HOH HOH . M 6 HOH A 219 719 241 HOH HOH . M 6 HOH A 220 720 286 HOH HOH . M 6 HOH A 221 721 282 HOH HOH . M 6 HOH A 222 722 289 HOH HOH . M 6 HOH A 223 723 200 HOH HOH . M 6 HOH A 224 724 206 HOH HOH . M 6 HOH A 225 725 275 HOH HOH . M 6 HOH A 226 726 193 HOH HOH . M 6 HOH A 227 727 230 HOH HOH . M 6 HOH A 228 728 131 HOH HOH . M 6 HOH A 229 729 176 HOH HOH . M 6 HOH A 230 730 113 HOH HOH . M 6 HOH A 231 731 255 HOH HOH . M 6 HOH A 232 732 266 HOH HOH . M 6 HOH A 233 733 84 HOH HOH . M 6 HOH A 234 734 284 HOH HOH . M 6 HOH A 235 735 121 HOH HOH . M 6 HOH A 236 736 250 HOH HOH . M 6 HOH A 237 737 216 HOH HOH . M 6 HOH A 238 738 278 HOH HOH . M 6 HOH A 239 739 237 HOH HOH . M 6 HOH A 240 740 199 HOH HOH . M 6 HOH A 241 741 231 HOH HOH . M 6 HOH A 242 742 261 HOH HOH . M 6 HOH A 243 743 190 HOH HOH . M 6 HOH A 244 744 153 HOH HOH . M 6 HOH A 245 745 188 HOH HOH . M 6 HOH A 246 746 281 HOH HOH . M 6 HOH A 247 747 211 HOH HOH . M 6 HOH A 248 748 181 HOH HOH . M 6 HOH A 249 749 119 HOH HOH . M 6 HOH A 250 750 198 HOH HOH . M 6 HOH A 251 751 125 HOH HOH . M 6 HOH A 252 752 158 HOH HOH . M 6 HOH A 253 753 165 HOH HOH . M 6 HOH A 254 754 213 HOH HOH . M 6 HOH A 255 755 270 HOH HOH . M 6 HOH A 256 756 175 HOH HOH . M 6 HOH A 257 757 236 HOH HOH . M 6 HOH A 258 758 251 HOH HOH . M 6 HOH A 259 759 23 HOH HOH . M 6 HOH A 260 760 91 HOH HOH . M 6 HOH A 261 761 149 HOH HOH . M 6 HOH A 262 762 285 HOH HOH . M 6 HOH A 263 763 133 HOH HOH . M 6 HOH A 264 764 246 HOH HOH . M 6 HOH A 265 765 90 HOH HOH . M 6 HOH A 266 766 247 HOH HOH . M 6 HOH A 267 767 209 HOH HOH . M 6 HOH A 268 768 264 HOH HOH . M 6 HOH A 269 769 254 HOH HOH . M 6 HOH A 270 770 273 HOH HOH . M 6 HOH A 271 771 192 HOH HOH . M 6 HOH A 272 772 279 HOH HOH . M 6 HOH A 273 773 178 HOH HOH . M 6 HOH A 274 774 196 HOH HOH . M 6 HOH A 275 775 276 HOH HOH . M 6 HOH A 276 776 265 HOH HOH . M 6 HOH A 277 777 292 HOH HOH . M 6 HOH A 278 778 269 HOH HOH . M 6 HOH A 279 779 267 HOH HOH . M 6 HOH A 280 780 210 HOH HOH . M 6 HOH A 281 781 291 HOH HOH . M 6 HOH A 282 782 191 HOH HOH . M 6 HOH A 283 783 268 HOH HOH . M 6 HOH A 284 784 169 HOH HOH . M 6 HOH A 285 785 293 HOH HOH . M 6 HOH A 286 786 233 HOH HOH . M 6 HOH A 287 787 201 HOH HOH . M 6 HOH A 288 788 222 HOH HOH . M 6 HOH A 289 789 179 HOH HOH . M 6 HOH A 290 790 81 HOH HOH . M 6 HOH A 291 791 180 HOH HOH . M 6 HOH A 292 792 242 HOH HOH . M 6 HOH A 293 793 288 HOH HOH . M 6 HOH A 294 794 102 HOH HOH . M 6 HOH A 295 795 239 HOH HOH . M 6 HOH A 296 796 223 HOH HOH . M 6 HOH A 297 797 294 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . F 4 -17.662 34.187 -10.007 1 24.66 ? C1 EDO 405 A 1 HETATM 2 O O1 EDO . . . F 4 -17.828 35.317 -9.15 1 25.14 ? O1 EDO 405 A 1 HETATM 3 C C2 EDO . . . F 4 -16.976 33.114 -9.204 1 23.45 ? C2 EDO 405 A 1 HETATM 4 O O2 EDO . . . F 4 -15.56 33.369 -9.209 1 24.96 ? O2 EDO 405 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 25 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 272 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 4 #