data_5ZV0 # _model_server_result.job_id fMcZHVxdY6HI9cXpTaCbKQ _model_server_result.datetime_utc '2024-10-19 21:41:30' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5zv0 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":402}' # _entry.id 5ZV0 # _exptl.entry_id 5ZV0 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5ZV0 _cell.length_a 36.27 _cell.length_b 91.78 _cell.length_c 116.74 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5ZV0 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N ? 2 D N N # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 83 n n C1 C2 EDO sing 84 n n C1 H11 EDO sing 85 n n C1 H12 EDO sing 86 n n O1 HO1 EDO sing 87 n n C2 O2 EDO sing 88 n n C2 H21 EDO sing 89 n n C2 H22 EDO sing 90 n n O2 HO2 EDO sing 91 n n # _atom_sites.entry_id 5ZV0 _atom_sites.fract_transf_matrix[1][1] 0.027571 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010896 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008566 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 EDO A 1 401 1 EDO EDO . C 2 EDO A 1 402 3 EDO EDO . D 2 EDO A 1 403 4 EDO EDO . E 3 HOH A 1 501 230 HOH HOH . E 3 HOH A 2 502 22 HOH HOH . E 3 HOH A 3 503 244 HOH HOH . E 3 HOH A 4 504 3 HOH HOH . E 3 HOH A 5 505 210 HOH HOH . E 3 HOH A 6 506 107 HOH HOH . E 3 HOH A 7 507 13 HOH HOH . E 3 HOH A 8 508 98 HOH HOH . E 3 HOH A 9 509 8 HOH HOH . E 3 HOH A 10 510 227 HOH HOH . E 3 HOH A 11 511 219 HOH HOH . E 3 HOH A 12 512 152 HOH HOH . E 3 HOH A 13 513 188 HOH HOH . E 3 HOH A 14 514 212 HOH HOH . E 3 HOH A 15 515 88 HOH HOH . E 3 HOH A 16 516 79 HOH HOH . E 3 HOH A 17 517 134 HOH HOH . E 3 HOH A 18 518 140 HOH HOH . E 3 HOH A 19 519 166 HOH HOH . E 3 HOH A 20 520 29 HOH HOH . E 3 HOH A 21 521 38 HOH HOH . E 3 HOH A 22 522 1 HOH HOH . E 3 HOH A 23 523 68 HOH HOH . E 3 HOH A 24 524 2 HOH HOH . E 3 HOH A 25 525 211 HOH HOH . E 3 HOH A 26 526 232 HOH HOH . E 3 HOH A 27 527 34 HOH HOH . E 3 HOH A 28 528 64 HOH HOH . E 3 HOH A 29 529 237 HOH HOH . E 3 HOH A 30 530 37 HOH HOH . E 3 HOH A 31 531 67 HOH HOH . E 3 HOH A 32 532 81 HOH HOH . E 3 HOH A 33 533 6 HOH HOH . E 3 HOH A 34 534 131 HOH HOH . E 3 HOH A 35 535 240 HOH HOH . E 3 HOH A 36 536 11 HOH HOH . E 3 HOH A 37 537 66 HOH HOH . E 3 HOH A 38 538 61 HOH HOH . E 3 HOH A 39 539 224 HOH HOH . E 3 HOH A 40 540 123 HOH HOH . E 3 HOH A 41 541 99 HOH HOH . E 3 HOH A 42 542 137 HOH HOH . E 3 HOH A 43 543 228 HOH HOH . E 3 HOH A 44 544 80 HOH HOH . E 3 HOH A 45 545 167 HOH HOH . E 3 HOH A 46 546 36 HOH HOH . E 3 HOH A 47 547 204 HOH HOH . E 3 HOH A 48 548 162 HOH HOH . E 3 HOH A 49 549 113 HOH HOH . E 3 HOH A 50 550 24 HOH HOH . E 3 HOH A 51 551 105 HOH HOH . E 3 HOH A 52 552 21 HOH HOH . E 3 HOH A 53 553 49 HOH HOH . E 3 HOH A 54 554 35 HOH HOH . E 3 HOH A 55 555 217 HOH HOH . E 3 HOH A 56 556 63 HOH HOH . E 3 HOH A 57 557 184 HOH HOH . E 3 HOH A 58 558 92 HOH HOH . E 3 HOH A 59 559 101 HOH HOH . E 3 HOH A 60 560 12 HOH HOH . E 3 HOH A 61 561 78 HOH HOH . E 3 HOH A 62 562 30 HOH HOH . E 3 HOH A 63 563 216 HOH HOH . E 3 HOH A 64 564 73 HOH HOH . E 3 HOH A 65 565 165 HOH HOH . E 3 HOH A 66 566 19 HOH HOH . E 3 HOH A 67 567 194 HOH HOH . E 3 HOH A 68 568 226 HOH HOH . E 3 HOH A 69 569 93 HOH HOH . E 3 HOH A 70 570 238 HOH HOH . E 3 HOH A 71 571 229 HOH HOH . E 3 HOH A 72 572 109 HOH HOH . E 3 HOH A 73 573 33 HOH HOH . E 3 HOH A 74 574 129 HOH HOH . E 3 HOH A 75 575 41 HOH HOH . E 3 HOH A 76 576 258 HOH HOH . E 3 HOH A 77 577 202 HOH HOH . E 3 HOH A 78 578 40 HOH HOH . E 3 HOH A 79 579 46 HOH HOH . E 3 HOH A 80 580 118 HOH HOH . E 3 HOH A 81 581 16 HOH HOH . E 3 HOH A 82 582 222 HOH HOH . E 3 HOH A 83 583 27 HOH HOH . E 3 HOH A 84 584 75 HOH HOH . E 3 HOH A 85 585 65 HOH HOH . E 3 HOH A 86 586 115 HOH HOH . E 3 HOH A 87 587 26 HOH HOH . E 3 HOH A 88 588 5 HOH HOH . E 3 HOH A 89 589 42 HOH HOH . E 3 HOH A 90 590 97 HOH HOH . E 3 HOH A 91 591 95 HOH HOH . E 3 HOH A 92 592 32 HOH HOH . E 3 HOH A 93 593 193 HOH HOH . E 3 HOH A 94 594 91 HOH HOH . E 3 HOH A 95 595 44 HOH HOH . E 3 HOH A 96 596 10 HOH HOH . E 3 HOH A 97 597 53 HOH HOH . E 3 HOH A 98 598 28 HOH HOH . E 3 HOH A 99 599 242 HOH HOH . E 3 HOH A 100 600 111 HOH HOH . E 3 HOH A 101 601 100 HOH HOH . E 3 HOH A 102 602 7 HOH HOH . E 3 HOH A 103 603 176 HOH HOH . E 3 HOH A 104 604 57 HOH HOH . E 3 HOH A 105 605 69 HOH HOH . E 3 HOH A 106 606 159 HOH HOH . E 3 HOH A 107 607 192 HOH HOH . E 3 HOH A 108 608 190 HOH HOH . E 3 HOH A 109 609 90 HOH HOH . E 3 HOH A 110 610 55 HOH HOH . E 3 HOH A 111 611 60 HOH HOH . E 3 HOH A 112 612 103 HOH HOH . E 3 HOH A 113 613 206 HOH HOH . E 3 HOH A 114 614 62 HOH HOH . E 3 HOH A 115 615 72 HOH HOH . E 3 HOH A 116 616 136 HOH HOH . E 3 HOH A 117 617 15 HOH HOH . E 3 HOH A 118 618 125 HOH HOH . E 3 HOH A 119 619 173 HOH HOH . E 3 HOH A 120 620 203 HOH HOH . E 3 HOH A 121 621 17 HOH HOH . E 3 HOH A 122 622 25 HOH HOH . E 3 HOH A 123 623 74 HOH HOH . E 3 HOH A 124 624 20 HOH HOH . E 3 HOH A 125 625 138 HOH HOH . E 3 HOH A 126 626 245 HOH HOH . E 3 HOH A 127 627 214 HOH HOH . E 3 HOH A 128 628 141 HOH HOH . E 3 HOH A 129 629 215 HOH HOH . E 3 HOH A 130 630 169 HOH HOH . E 3 HOH A 131 631 257 HOH HOH . E 3 HOH A 132 632 9 HOH HOH . E 3 HOH A 133 633 139 HOH HOH . E 3 HOH A 134 634 132 HOH HOH . E 3 HOH A 135 635 31 HOH HOH . E 3 HOH A 136 636 179 HOH HOH . E 3 HOH A 137 637 114 HOH HOH . E 3 HOH A 138 638 83 HOH HOH . E 3 HOH A 139 639 146 HOH HOH . E 3 HOH A 140 640 239 HOH HOH . E 3 HOH A 141 641 197 HOH HOH . E 3 HOH A 142 642 4 HOH HOH . E 3 HOH A 143 643 208 HOH HOH . E 3 HOH A 144 644 18 HOH HOH . E 3 HOH A 145 645 85 HOH HOH . E 3 HOH A 146 646 106 HOH HOH . E 3 HOH A 147 647 128 HOH HOH . E 3 HOH A 148 648 43 HOH HOH . E 3 HOH A 149 649 45 HOH HOH . E 3 HOH A 150 650 58 HOH HOH . E 3 HOH A 151 651 177 HOH HOH . E 3 HOH A 152 652 168 HOH HOH . E 3 HOH A 153 653 172 HOH HOH . E 3 HOH A 154 654 89 HOH HOH . E 3 HOH A 155 655 201 HOH HOH . E 3 HOH A 156 656 52 HOH HOH . E 3 HOH A 157 657 196 HOH HOH . E 3 HOH A 158 658 233 HOH HOH . E 3 HOH A 159 659 220 HOH HOH . E 3 HOH A 160 660 175 HOH HOH . E 3 HOH A 161 661 150 HOH HOH . E 3 HOH A 162 662 108 HOH HOH . E 3 HOH A 163 663 200 HOH HOH . E 3 HOH A 164 664 198 HOH HOH . E 3 HOH A 165 665 231 HOH HOH . E 3 HOH A 166 666 96 HOH HOH . E 3 HOH A 167 667 249 HOH HOH . E 3 HOH A 168 668 51 HOH HOH . E 3 HOH A 169 669 147 HOH HOH . E 3 HOH A 170 670 247 HOH HOH . E 3 HOH A 171 671 148 HOH HOH . E 3 HOH A 172 672 207 HOH HOH . E 3 HOH A 173 673 84 HOH HOH . E 3 HOH A 174 674 256 HOH HOH . E 3 HOH A 175 675 174 HOH HOH . E 3 HOH A 176 676 213 HOH HOH . E 3 HOH A 177 677 260 HOH HOH . E 3 HOH A 178 678 259 HOH HOH . E 3 HOH A 179 679 191 HOH HOH . E 3 HOH A 180 680 143 HOH HOH . E 3 HOH A 181 681 253 HOH HOH . E 3 HOH A 182 682 225 HOH HOH . E 3 HOH A 183 683 254 HOH HOH . E 3 HOH A 184 684 186 HOH HOH . E 3 HOH A 185 685 250 HOH HOH . E 3 HOH A 186 686 189 HOH HOH . E 3 HOH A 187 687 187 HOH HOH . E 3 HOH A 188 688 195 HOH HOH . E 3 HOH A 189 689 160 HOH HOH . E 3 HOH A 190 690 218 HOH HOH . E 3 HOH A 191 691 54 HOH HOH . E 3 HOH A 192 692 248 HOH HOH . E 3 HOH A 193 693 255 HOH HOH . E 3 HOH A 194 694 161 HOH HOH . E 3 HOH A 195 695 163 HOH HOH . E 3 HOH A 196 696 56 HOH HOH . E 3 HOH A 197 697 112 HOH HOH . E 3 HOH A 198 698 241 HOH HOH . E 3 HOH A 199 699 236 HOH HOH . E 3 HOH A 200 700 221 HOH HOH . E 3 HOH A 201 701 205 HOH HOH . E 3 HOH A 202 702 243 HOH HOH . E 3 HOH A 203 703 246 HOH HOH . E 3 HOH A 204 704 251 HOH HOH . E 3 HOH A 205 705 70 HOH HOH . E 3 HOH A 206 706 223 HOH HOH . E 3 HOH A 207 707 252 HOH HOH . E 3 HOH A 208 708 209 HOH HOH . E 3 HOH A 209 709 235 HOH HOH . E 3 HOH A 210 710 234 HOH HOH . E 3 HOH A 211 711 102 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . C 2 -4.18 25.454 141.535 1 36.36 ? C1 EDO 402 A 1 HETATM 2 O O1 EDO . . . C 2 -3.702 26.763 141.823 1 37.11 ? O1 EDO 402 A 1 HETATM 3 C C2 EDO . . . C 2 -3.06 24.43 141.692 1 36.59 ? C2 EDO 402 A 1 HETATM 4 O O2 EDO . . . C 2 -3.431 23.26 140.948 1 35.87 ? O2 EDO 402 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 260 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 4 #