data_5ZV2
#
_model_server_result.job_id            B0TSubWnz35YwigSaHuo1Q 
_model_server_result.datetime_utc      '2024-10-10 19:19:41' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5zv2 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":801}' 
#
_entry.id    5ZV2 
#
_exptl.entry_id    5ZV2 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              426.853 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            4-{3-chloro-4-[(cyclopropylcarbamoyl)amino]phenoxy}-7-methoxyquinoline-6-carboxamide 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          106.75 
_cell.angle_gamma         90 
_cell.entry_id            5ZV2 
_cell.length_a            210.214 
_cell.length_b            57.464 
_cell.length_c            65.955 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5ZV2 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,E 1 1 
B,D,F 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
#
_struct_conn.conn_type_id                   covale 
_struct_conn.details                        ? 
_struct_conn.id                             covale1 
_struct_conn.ptnr1_label_asym_id            A 
_struct_conn.ptnr1_label_atom_id            OE1 
_struct_conn.ptnr1_label_comp_id            GLU 
_struct_conn.ptnr1_label_seq_id             5 
_struct_conn.ptnr1_auth_asym_id             A 
_struct_conn.ptnr1_auth_comp_id             GLU 
_struct_conn.ptnr1_auth_seq_id              464 
_struct_conn.ptnr1_symmetry                 1_555 
_struct_conn.ptnr2_label_asym_id            B 
_struct_conn.ptnr2_label_atom_id            CZ 
_struct_conn.ptnr2_label_comp_id            ARG 
_struct_conn.ptnr2_label_seq_id             48 
_struct_conn.ptnr2_auth_asym_id             B 
_struct_conn.ptnr2_auth_comp_id             ARG 
_struct_conn.ptnr2_auth_seq_id              507 
_struct_conn.ptnr2_symmetry                 2_566 
_struct_conn.pdbx_ptnr1_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr1_label_alt_id        ? 
_struct_conn.pdbx_ptnr1_standard_comp_id    ? 
_struct_conn.pdbx_ptnr2_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr2_label_alt_id        ? 
_struct_conn.pdbx_ptnr3_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr3_label_alt_id        ? 
_struct_conn.pdbx_ptnr3_label_asym_id       ? 
_struct_conn.pdbx_ptnr3_label_atom_id       ? 
_struct_conn.pdbx_ptnr3_label_comp_id       ? 
_struct_conn.pdbx_ptnr3_label_seq_id        ? 
_struct_conn.pdbx_PDB_id                    ? 
_struct_conn.pdbx_dist_value                1.432 
_struct_conn.pdbx_value_order               ? 
#
_chem_comp.formula           'C21 H19 Cl N4 O4' 
_chem_comp.formula_weight    426.853 
_chem_comp.id                LEV 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              4-{3-chloro-4-[(cyclopropylcarbamoyl)amino]phenoxy}-7-methoxyquinoline-6-carboxamide 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     lenvatinib 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C29 C28 LEV sing 194 n n 
C29 C27 LEV sing 195 n n 
C28 C27 LEV sing 196 n n 
C27 N26 LEV sing 197 n n 
N26 C24 LEV sing 198 n n 
C24 N23 LEV sing 199 n n 
C24 O25 LEV doub 200 n n 
N23 C20 LEV sing 201 n n 
CL C19 LEV sing 202 n n 
C20 C19 LEV doub 203 n y 
C20 C21 LEV sing 204 n y 
C19 C18 LEV sing 205 n y 
C21 C22 LEV doub 206 n y 
C18 C17 LEV doub 207 n y 
C22 C17 LEV sing 208 n y 
C17 O16 LEV sing 209 n n 
C8 C9 LEV doub 210 n y 
C8 C7 LEV sing 211 n y 
O16 C9 LEV sing 212 n n 
C9 C10 LEV sing 213 n y 
C7 N6 LEV doub 214 n y 
N6 C5 LEV sing 215 n y 
C10 C5 LEV doub 216 n y 
C10 C11 LEV sing 217 n y 
C5 C4 LEV sing 218 n y 
C11 C12 LEV doub 219 n y 
C4 C3 LEV doub 220 n y 
C12 C3 LEV sing 221 n y 
C12 C13 LEV sing 222 n n 
O14 C13 LEV doub 223 n n 
C3 O2 LEV sing 224 n n 
C13 N15 LEV sing 225 n n 
O2 C1 LEV sing 226 n n 
C1 H1 LEV sing 227 n n 
C1 H2 LEV sing 228 n n 
C1 H3 LEV sing 229 n n 
C4 H4 LEV sing 230 n n 
C7 H5 LEV sing 231 n n 
C8 H6 LEV sing 232 n n 
C11 H7 LEV sing 233 n n 
N15 H8 LEV sing 234 n n 
N15 H9 LEV sing 235 n n 
C18 H10 LEV sing 236 n n 
C21 H11 LEV sing 237 n n 
C22 H12 LEV sing 238 n n 
N23 H13 LEV sing 239 n n 
N26 H14 LEV sing 240 n n 
C27 H15 LEV sing 241 n n 
C28 H16 LEV sing 242 n n 
C28 H17 LEV sing 243 n n 
C29 H18 LEV sing 244 n n 
C29 H19 LEV sing 245 n n 
#
_atom_sites.entry_id                     5ZV2 
_atom_sites.fract_transf_matrix[1][1]    0.004757 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.001432 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.017402 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.015834 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 LEV A 1 801 1 LEV INX . 
D 2 LEV B 1 801 2 LEV INX . 
E 3 HOH A 1 901 1 HOH HOH . 
E 3 HOH A 2 902 5 HOH HOH . 
E 3 HOH A 3 903 4 HOH HOH . 
F 3 HOH B 1 901 9 HOH HOH . 
F 3 HOH B 2 902 2 HOH HOH . 
F 3 HOH B 3 903 6 HOH HOH . 
F 3 HOH B 4 904 8 HOH HOH . 
F 3 HOH B 5 905 7 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 LEV . . . D 2 21.126 -54.325 58.678 1 101.62 ? C1 LEV 801 B 1 
HETATM 2 O O2 LEV . . . D 2 21.784 -53.822 57.516 1 90.14 ? O2 LEV 801 B 1 
HETATM 3 C C3 LEV . . . D 2 21.134 -52.988 56.664 1 92.12 ? C3 LEV 801 B 1 
HETATM 4 C C4 LEV . . . D 2 20.082 -53.476 55.937 1 93.18 ? C4 LEV 801 B 1 
HETATM 5 C C5 LEV . . . D 2 19.393 -52.652 55.033 1 90.23 ? C5 LEV 801 B 1 
HETATM 6 N N6 LEV . . . D 2 18.361 -53.134 54.333 1 85.39 ? N6 LEV 801 B 1 
HETATM 7 C C7 LEV . . . D 2 17.711 -52.371 53.481 1 74.7 ? C7 LEV 801 B 1 
HETATM 8 C C8 LEV . . . D 2 18.035 -51.046 53.26 1 66.52 ? C8 LEV 801 B 1 
HETATM 9 C C9 LEV . . . D 2 19.1 -50.468 53.952 1 70.68 ? C9 LEV 801 B 1 
HETATM 10 C C10 LEV . . . D 2 19.8 -51.295 54.869 1 88.13 ? C10 LEV 801 B 1 
HETATM 11 C C11 LEV . . . D 2 20.886 -50.808 55.613 1 102.3 ? C11 LEV 801 B 1 
HETATM 12 C C12 LEV . . . D 2 21.562 -51.639 56.504 1 95.46 ? C12 LEV 801 B 1 
HETATM 13 C C13 LEV . . . D 2 22.708 -51.066 57.246 1 95.07 ? C13 LEV 801 B 1 
HETATM 14 O O14 LEV . . . D 2 22.748 -49.868 57.438 1 109.99 ? O14 LEV 801 B 1 
HETATM 15 N N15 LEV . . . D 2 23.73 -51.832 57.694 1 90.71 ? N15 LEV 801 B 1 
HETATM 16 O O16 LEV . . . D 2 19.495 -49.176 53.81 1 74.99 ? O16 LEV 801 B 1 
HETATM 17 C C17 LEV . . . D 2 19.137 -48.415 52.751 1 68.97 ? C17 LEV 801 B 1 
HETATM 18 C C18 LEV . . . D 2 17.853 -47.884 52.692 1 66.3 ? C18 LEV 801 B 1 
HETATM 19 C C19 LEV . . . D 2 17.484 -47.117 51.607 1 71.45 ? C19 LEV 801 B 1 
HETATM 20 C C20 LEV . . . D 2 18.384 -46.859 50.583 1 85.77 ? C20 LEV 801 B 1 
HETATM 21 C C21 LEV . . . D 2 19.68 -47.381 50.657 1 82.99 ? C21 LEV 801 B 1 
HETATM 22 C C22 LEV . . . D 2 20.05 -48.167 51.735 1 67.46 ? C22 LEV 801 B 1 
HETATM 23 N N23 LEV . . . D 2 17.914 -46.046 49.537 1 97.59 ? N23 LEV 801 B 1 
HETATM 24 C C24 LEV . . . D 2 18.269 -46.162 48.239 1 99.06 ? C24 LEV 801 B 1 
HETATM 25 O O25 LEV . . . D 2 19.055 -47.012 47.858 1 95.5 ? O25 LEV 801 B 1 
HETATM 26 N N26 LEV . . . D 2 17.716 -45.297 47.361 1 94.66 ? N26 LEV 801 B 1 
HETATM 27 C C27 LEV . . . D 2 18.057 -45.331 45.945 1 87.48 ? C27 LEV 801 B 1 
HETATM 28 C C28 LEV . . . D 2 17.219 -44.605 44.89 1 115.32 ? C28 LEV 801 B 1 
HETATM 29 C C29 LEV . . . D 2 18.506 -43.976 45.416 1 108.5 ? C29 LEV 801 B 1 
HETATM 30 CL CL LEV . . . D 2 15.897 -46.447 51.496 1 101.56 ? CL LEV 801 B 1 
#
_model_server_stats.io_time_ms              57 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    6 
_model_server_stats.query_time_ms           268 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           30 
#