data_5ZVA # _model_server_result.job_id zEY_XEQCRAcGjtxOZSY9tw _model_server_result.datetime_utc '2024-11-05 01:29:27' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5zva # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":401}' # _entry.id 5ZVA # _exptl.entry_id 5ZVA _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 65.409 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ZINC ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5ZVA _cell.length_a 61.312 _cell.length_b 91.304 _cell.length_c 91.354 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5ZVA _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,H,J 1 1 B,F,G,I 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 B SG CYS 84 B CYS 248 1_555 B SG CYS 89 B CYS 253 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.418 ? metalc ? metalc1 A ND1 HIS 85 A HIS 249 1_555 D ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.199 ? metalc ? metalc2 A SG CYS 116 A CYS 280 1_555 D ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.38 ? metalc ? metalc3 A SG CYS 119 A CYS 283 1_555 D ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.214 ? metalc ? metalc4 B ND1 HIS 85 B HIS 249 1_555 F ZN ZN . B ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.091 ? metalc ? metalc5 B SG CYS 116 B CYS 280 1_555 F ZN ZN . B ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.267 ? metalc ? metalc6 B SG CYS 119 B CYS 283 1_555 F ZN ZN . B ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.178 ? metalc ? metalc7 D ZN ZN . A ZN 401 1_555 E O1 CAC . A CAC 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.25 ? metalc ? metalc8 F ZN ZN . B ZN 401 1_555 G O1 CAC . B CAC 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.107 ? # _chem_comp.formula 'Zn 2' _chem_comp.formula_weight 65.409 _chem_comp.id ZN _chem_comp.mon_nstd_flag . _chem_comp.name 'ZINC ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5ZVA _atom_sites.fract_transf_matrix[1][1] 0.01631 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010952 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010946 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 3 ZN A 1 401 401 ZN ZN . E 4 CAC A 1 402 402 CAC CAC . F 3 ZN B 1 401 401 ZN ZN . G 4 CAC B 1 402 402 CAC CAC . H 5 HOH A 1 501 501 HOH HOH . H 5 HOH A 2 502 502 HOH HOH . H 5 HOH A 3 503 503 HOH HOH . H 5 HOH A 4 504 504 HOH HOH . H 5 HOH A 5 505 505 HOH HOH . H 5 HOH A 6 506 506 HOH HOH . H 5 HOH A 7 507 507 HOH HOH . H 5 HOH A 8 508 508 HOH HOH . H 5 HOH A 9 509 509 HOH HOH . H 5 HOH A 10 510 510 HOH HOH . H 5 HOH A 11 511 511 HOH HOH . H 5 HOH A 12 512 512 HOH HOH . H 5 HOH A 13 513 513 HOH HOH . H 5 HOH A 14 514 514 HOH HOH . H 5 HOH A 15 515 515 HOH HOH . H 5 HOH A 16 516 516 HOH HOH . H 5 HOH A 17 517 517 HOH HOH . H 5 HOH A 18 518 518 HOH HOH . H 5 HOH A 19 519 519 HOH HOH . H 5 HOH A 20 520 520 HOH HOH . H 5 HOH A 21 521 521 HOH HOH . H 5 HOH A 22 522 522 HOH HOH . H 5 HOH A 23 523 523 HOH HOH . H 5 HOH A 24 524 524 HOH HOH . H 5 HOH A 25 525 525 HOH HOH . H 5 HOH A 26 526 526 HOH HOH . H 5 HOH A 27 527 527 HOH HOH . H 5 HOH A 28 528 528 HOH HOH . H 5 HOH A 29 529 529 HOH HOH . H 5 HOH A 30 530 530 HOH HOH . H 5 HOH A 31 531 531 HOH HOH . H 5 HOH A 32 532 532 HOH HOH . H 5 HOH A 33 533 533 HOH HOH . H 5 HOH A 34 534 534 HOH HOH . H 5 HOH A 35 535 535 HOH HOH . H 5 HOH A 36 536 536 HOH HOH . H 5 HOH A 37 537 537 HOH HOH . H 5 HOH A 38 538 538 HOH HOH . H 5 HOH A 39 539 539 HOH HOH . H 5 HOH A 40 540 540 HOH HOH . H 5 HOH A 41 541 541 HOH HOH . H 5 HOH A 42 542 542 HOH HOH . H 5 HOH A 43 543 543 HOH HOH . H 5 HOH A 44 544 544 HOH HOH . H 5 HOH A 45 545 545 HOH HOH . H 5 HOH A 46 546 546 HOH HOH . H 5 HOH A 47 547 547 HOH HOH . H 5 HOH A 48 548 548 HOH HOH . H 5 HOH A 49 549 549 HOH HOH . H 5 HOH A 50 550 550 HOH HOH . H 5 HOH A 51 551 551 HOH HOH . H 5 HOH A 52 552 552 HOH HOH . H 5 HOH A 53 553 553 HOH HOH . H 5 HOH A 54 554 554 HOH HOH . H 5 HOH A 55 555 555 HOH HOH . H 5 HOH A 56 556 556 HOH HOH . I 5 HOH B 1 501 501 HOH HOH . I 5 HOH B 2 502 502 HOH HOH . I 5 HOH B 3 503 503 HOH HOH . I 5 HOH B 4 504 504 HOH HOH . I 5 HOH B 5 505 505 HOH HOH . I 5 HOH B 6 506 506 HOH HOH . I 5 HOH B 7 507 507 HOH HOH . I 5 HOH B 8 508 508 HOH HOH . I 5 HOH B 9 509 509 HOH HOH . I 5 HOH B 10 510 510 HOH HOH . I 5 HOH B 11 511 511 HOH HOH . I 5 HOH B 12 512 512 HOH HOH . I 5 HOH B 13 513 513 HOH HOH . I 5 HOH B 14 514 514 HOH HOH . I 5 HOH B 15 515 515 HOH HOH . I 5 HOH B 16 516 516 HOH HOH . I 5 HOH B 17 517 517 HOH HOH . I 5 HOH B 18 518 518 HOH HOH . I 5 HOH B 19 519 519 HOH HOH . I 5 HOH B 20 520 520 HOH HOH . I 5 HOH B 21 521 521 HOH HOH . I 5 HOH B 22 522 522 HOH HOH . I 5 HOH B 23 523 523 HOH HOH . I 5 HOH B 24 524 524 HOH HOH . I 5 HOH B 25 525 525 HOH HOH . I 5 HOH B 26 526 526 HOH HOH . I 5 HOH B 27 527 527 HOH HOH . I 5 HOH B 28 528 528 HOH HOH . I 5 HOH B 29 529 529 HOH HOH . I 5 HOH B 30 530 530 HOH HOH . I 5 HOH B 31 531 531 HOH HOH . I 5 HOH B 32 532 532 HOH HOH . I 5 HOH B 33 533 533 HOH HOH . I 5 HOH B 34 534 534 HOH HOH . I 5 HOH B 35 535 535 HOH HOH . I 5 HOH B 36 536 536 HOH HOH . I 5 HOH B 37 537 537 HOH HOH . I 5 HOH B 38 538 538 HOH HOH . I 5 HOH B 39 539 539 HOH HOH . I 5 HOH B 40 540 540 HOH HOH . I 5 HOH B 41 541 541 HOH HOH . I 5 HOH B 42 542 542 HOH HOH . I 5 HOH B 43 543 543 HOH HOH . I 5 HOH B 44 544 544 HOH HOH . I 5 HOH B 45 545 545 HOH HOH . I 5 HOH B 46 546 546 HOH HOH . I 5 HOH B 47 547 547 HOH HOH . I 5 HOH B 48 548 548 HOH HOH . J 5 HOH C 1 201 201 HOH HOH . J 5 HOH C 2 202 202 HOH HOH . J 5 HOH C 3 203 203 HOH HOH . J 5 HOH C 4 204 204 HOH HOH . J 5 HOH C 5 205 205 HOH HOH . J 5 HOH C 6 206 206 HOH HOH . J 5 HOH C 7 207 207 HOH HOH . J 5 HOH C 8 208 208 HOH HOH . J 5 HOH C 9 209 209 HOH HOH . J 5 HOH C 10 210 210 HOH HOH . J 5 HOH C 11 211 211 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol ZN _atom_site.label_atom_id ZN _atom_site.label_comp_id ZN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id F _atom_site.label_entity_id 3 _atom_site.Cartn_x -14.053 _atom_site.Cartn_y -38.328 _atom_site.Cartn_z 26.105 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 52.58 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id ZN _atom_site.auth_comp_id ZN _atom_site.auth_seq_id 401 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 0 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 285 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 1 #