data_5ZVB
#
_model_server_result.job_id            zS0cAcbmEHdMAVSTpLqjdA 
_model_server_result.datetime_utc      '2024-12-23 03:55:49' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5zvb 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":401}' 
#
_entry.id    5ZVB 
#
_exptl.entry_id    5ZVB 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              65.409 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'ZINC ION' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5ZVB 
_cell.length_a            60.99 
_cell.length_b            92.702 
_cell.length_c            93.674 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5ZVB 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA monomeric 1 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,E,H,J 1 1 
B,F,G,I 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 D N N 
? 3 F N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 B SG CYS 84 B CYS 248 1_555 B SG CYS 89 B CYS 253 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.406 ? 
covale ? covale1 A C ALA 30 A ALA -24 1_555 A N MSE 31 A MSE -23 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
covale ? covale2 A C MSE 31 A MSE -23 1_555 A N ASP 32 A ASP -22 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
covale ? covale3 A C THR 57 A THR 221 1_555 A N MSE 58 A MSE 222 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.322 ? 
covale ? covale4 A C MSE 58 A MSE 222 1_555 A N GLU 59 A GLU 223 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? 
covale ? covale5 A C ILE 166 A ILE 330 1_555 A N MSE 167 A MSE 331 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? 
covale ? covale6 A C MSE 167 A MSE 331 1_555 A N GLY 168 A GLY 332 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? 
covale ? covale7 B C ALA 30 B ALA -24 1_555 B N MSE 31 B MSE -23 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? 
covale ? covale8 B C MSE 31 B MSE -23 1_555 B N ASP 32 B ASP -22 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.338 ? 
covale ? covale9 B C THR 57 B THR 221 1_555 B N MSE 58 B MSE 222 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.321 ? 
covale ? covale10 B C MSE 58 B MSE 222 1_555 B N GLU 59 B GLU 223 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? 
covale ? covale11 B C ILE 166 B ILE 330 1_555 B N MSE 167 B MSE 331 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? 
covale ? covale12 B C MSE 167 B MSE 331 1_555 B N GLY 168 B GLY 332 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
metalc ? metalc1 A ND1 HIS 85 A HIS 249 1_555 D ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.192 ? 
metalc ? metalc2 A SG CYS 116 A CYS 280 1_555 D ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.213 ? 
metalc ? metalc3 A SG CYS 119 A CYS 283 1_555 D ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.224 ? 
metalc ? metalc4 D ZN ZN . A ZN 401 1_555 E O1 CAC . A CAC 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.167 ? 
metalc ? metalc5 B ND1 HIS 85 B HIS 249 1_555 F ZN ZN . B ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.149 ? 
metalc ? metalc6 B SG CYS 116 B CYS 280 1_555 F ZN ZN . B ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.199 ? 
metalc ? metalc7 B SG CYS 119 B CYS 283 1_555 F ZN ZN . B ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.195 ? 
metalc ? metalc8 F ZN ZN . B ZN 401 1_555 G O1 CAC . B CAC 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.184 ? 
#
_chem_comp.formula           'Zn 2' 
_chem_comp.formula_weight    65.409 
_chem_comp.id                ZN 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'ZINC ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     5ZVB 
_atom_sites.fract_transf_matrix[1][1]    0.016396 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.010787 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.010675 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 3 ZN A 1 401 1 ZN ZN . 
E 4 CAC A 1 402 2 CAC CAC . 
F 3 ZN B 1 401 2 ZN ZN . 
G 4 CAC B 1 402 1 CAC CAC . 
H 5 HOH A 1 501 10 HOH HOH . 
H 5 HOH A 2 502 66 HOH HOH . 
H 5 HOH A 3 503 5 HOH HOH . 
H 5 HOH A 4 504 98 HOH HOH . 
H 5 HOH A 5 505 8 HOH HOH . 
H 5 HOH A 6 506 203 HOH HOH . 
H 5 HOH A 7 507 185 HOH HOH . 
H 5 HOH A 8 508 184 HOH HOH . 
H 5 HOH A 9 509 172 HOH HOH . 
H 5 HOH A 10 510 78 HOH HOH . 
H 5 HOH A 11 511 79 HOH HOH . 
H 5 HOH A 12 512 147 HOH HOH . 
H 5 HOH A 13 513 15 HOH HOH . 
H 5 HOH A 14 514 31 HOH HOH . 
H 5 HOH A 15 515 1 HOH HOH . 
H 5 HOH A 16 516 165 HOH HOH . 
H 5 HOH A 17 517 68 HOH HOH . 
H 5 HOH A 18 518 179 HOH HOH . 
H 5 HOH A 19 519 37 HOH HOH . 
H 5 HOH A 20 520 195 HOH HOH . 
H 5 HOH A 21 521 188 HOH HOH . 
H 5 HOH A 22 522 58 HOH HOH . 
H 5 HOH A 23 523 146 HOH HOH . 
H 5 HOH A 24 524 154 HOH HOH . 
H 5 HOH A 25 525 139 HOH HOH . 
H 5 HOH A 26 526 82 HOH HOH . 
H 5 HOH A 27 527 45 HOH HOH . 
H 5 HOH A 28 528 47 HOH HOH . 
H 5 HOH A 29 529 54 HOH HOH . 
H 5 HOH A 30 530 40 HOH HOH . 
H 5 HOH A 31 531 210 HOH HOH . 
H 5 HOH A 32 532 11 HOH HOH . 
H 5 HOH A 33 533 173 HOH HOH . 
H 5 HOH A 34 534 30 HOH HOH . 
H 5 HOH A 35 535 170 HOH HOH . 
H 5 HOH A 36 536 211 HOH HOH . 
H 5 HOH A 37 537 44 HOH HOH . 
H 5 HOH A 38 538 201 HOH HOH . 
H 5 HOH A 39 539 169 HOH HOH . 
H 5 HOH A 40 540 71 HOH HOH . 
H 5 HOH A 41 541 13 HOH HOH . 
H 5 HOH A 42 542 23 HOH HOH . 
H 5 HOH A 43 543 162 HOH HOH . 
H 5 HOH A 44 544 209 HOH HOH . 
H 5 HOH A 45 545 135 HOH HOH . 
H 5 HOH A 46 546 18 HOH HOH . 
H 5 HOH A 47 547 93 HOH HOH . 
H 5 HOH A 48 548 153 HOH HOH . 
H 5 HOH A 49 549 129 HOH HOH . 
H 5 HOH A 50 550 4 HOH HOH . 
H 5 HOH A 51 551 50 HOH HOH . 
H 5 HOH A 52 552 114 HOH HOH . 
H 5 HOH A 53 553 75 HOH HOH . 
H 5 HOH A 54 554 67 HOH HOH . 
H 5 HOH A 55 555 77 HOH HOH . 
H 5 HOH A 56 556 110 HOH HOH . 
H 5 HOH A 57 557 35 HOH HOH . 
H 5 HOH A 58 558 167 HOH HOH . 
H 5 HOH A 59 559 160 HOH HOH . 
H 5 HOH A 60 560 144 HOH HOH . 
H 5 HOH A 61 561 22 HOH HOH . 
H 5 HOH A 62 562 193 HOH HOH . 
H 5 HOH A 63 563 25 HOH HOH . 
H 5 HOH A 64 564 51 HOH HOH . 
H 5 HOH A 65 565 204 HOH HOH . 
H 5 HOH A 66 566 208 HOH HOH . 
H 5 HOH A 67 567 177 HOH HOH . 
H 5 HOH A 68 568 80 HOH HOH . 
H 5 HOH A 69 569 166 HOH HOH . 
H 5 HOH A 70 570 83 HOH HOH . 
H 5 HOH A 71 571 59 HOH HOH . 
H 5 HOH A 72 572 187 HOH HOH . 
H 5 HOH A 73 573 140 HOH HOH . 
H 5 HOH A 74 574 176 HOH HOH . 
H 5 HOH A 75 575 95 HOH HOH . 
H 5 HOH A 76 576 189 HOH HOH . 
H 5 HOH A 77 577 14 HOH HOH . 
H 5 HOH A 78 578 48 HOH HOH . 
H 5 HOH A 79 579 131 HOH HOH . 
H 5 HOH A 80 580 64 HOH HOH . 
H 5 HOH A 81 581 56 HOH HOH . 
H 5 HOH A 82 582 181 HOH HOH . 
H 5 HOH A 83 583 159 HOH HOH . 
H 5 HOH A 84 584 182 HOH HOH . 
H 5 HOH A 85 585 104 HOH HOH . 
H 5 HOH A 86 586 150 HOH HOH . 
H 5 HOH A 87 587 164 HOH HOH . 
H 5 HOH A 88 588 88 HOH HOH . 
H 5 HOH A 89 589 148 HOH HOH . 
H 5 HOH A 90 590 112 HOH HOH . 
H 5 HOH A 91 591 128 HOH HOH . 
H 5 HOH A 92 592 87 HOH HOH . 
H 5 HOH A 93 593 127 HOH HOH . 
H 5 HOH A 94 594 109 HOH HOH . 
H 5 HOH A 95 595 163 HOH HOH . 
H 5 HOH A 96 596 57 HOH HOH . 
H 5 HOH A 97 597 190 HOH HOH . 
H 5 HOH A 98 598 28 HOH HOH . 
H 5 HOH A 99 599 137 HOH HOH . 
H 5 HOH A 100 600 132 HOH HOH . 
H 5 HOH A 101 601 130 HOH HOH . 
H 5 HOH A 102 602 97 HOH HOH . 
H 5 HOH A 103 603 105 HOH HOH . 
H 5 HOH A 104 604 178 HOH HOH . 
I 5 HOH B 1 501 143 HOH HOH . 
I 5 HOH B 2 502 70 HOH HOH . 
I 5 HOH B 3 503 42 HOH HOH . 
I 5 HOH B 4 504 158 HOH HOH . 
I 5 HOH B 5 505 123 HOH HOH . 
I 5 HOH B 6 506 33 HOH HOH . 
I 5 HOH B 7 507 116 HOH HOH . 
I 5 HOH B 8 508 20 HOH HOH . 
I 5 HOH B 9 509 92 HOH HOH . 
I 5 HOH B 10 510 113 HOH HOH . 
I 5 HOH B 11 511 121 HOH HOH . 
I 5 HOH B 12 512 21 HOH HOH . 
I 5 HOH B 13 513 106 HOH HOH . 
I 5 HOH B 14 514 53 HOH HOH . 
I 5 HOH B 15 515 29 HOH HOH . 
I 5 HOH B 16 516 198 HOH HOH . 
I 5 HOH B 17 517 3 HOH HOH . 
I 5 HOH B 18 518 111 HOH HOH . 
I 5 HOH B 19 519 61 HOH HOH . 
I 5 HOH B 20 520 69 HOH HOH . 
I 5 HOH B 21 521 60 HOH HOH . 
I 5 HOH B 22 522 138 HOH HOH . 
I 5 HOH B 23 523 41 HOH HOH . 
I 5 HOH B 24 524 19 HOH HOH . 
I 5 HOH B 25 525 155 HOH HOH . 
I 5 HOH B 26 526 205 HOH HOH . 
I 5 HOH B 27 527 39 HOH HOH . 
I 5 HOH B 28 528 141 HOH HOH . 
I 5 HOH B 29 529 7 HOH HOH . 
I 5 HOH B 30 530 27 HOH HOH . 
I 5 HOH B 31 531 103 HOH HOH . 
I 5 HOH B 32 532 26 HOH HOH . 
I 5 HOH B 33 533 65 HOH HOH . 
I 5 HOH B 34 534 76 HOH HOH . 
I 5 HOH B 35 535 24 HOH HOH . 
I 5 HOH B 36 536 52 HOH HOH . 
I 5 HOH B 37 537 192 HOH HOH . 
I 5 HOH B 38 538 6 HOH HOH . 
I 5 HOH B 39 539 124 HOH HOH . 
I 5 HOH B 40 540 74 HOH HOH . 
I 5 HOH B 41 541 73 HOH HOH . 
I 5 HOH B 42 542 117 HOH HOH . 
I 5 HOH B 43 543 99 HOH HOH . 
I 5 HOH B 44 544 89 HOH HOH . 
I 5 HOH B 45 545 49 HOH HOH . 
I 5 HOH B 46 546 120 HOH HOH . 
I 5 HOH B 47 547 149 HOH HOH . 
I 5 HOH B 48 548 2 HOH HOH . 
I 5 HOH B 49 549 94 HOH HOH . 
I 5 HOH B 50 550 118 HOH HOH . 
I 5 HOH B 51 551 46 HOH HOH . 
I 5 HOH B 52 552 9 HOH HOH . 
I 5 HOH B 53 553 196 HOH HOH . 
I 5 HOH B 54 554 175 HOH HOH . 
I 5 HOH B 55 555 34 HOH HOH . 
I 5 HOH B 56 556 119 HOH HOH . 
I 5 HOH B 57 557 81 HOH HOH . 
I 5 HOH B 58 558 84 HOH HOH . 
I 5 HOH B 59 559 55 HOH HOH . 
I 5 HOH B 60 560 108 HOH HOH . 
I 5 HOH B 61 561 171 HOH HOH . 
I 5 HOH B 62 562 43 HOH HOH . 
I 5 HOH B 63 563 86 HOH HOH . 
I 5 HOH B 64 564 17 HOH HOH . 
I 5 HOH B 65 565 36 HOH HOH . 
I 5 HOH B 66 566 174 HOH HOH . 
I 5 HOH B 67 567 72 HOH HOH . 
I 5 HOH B 68 568 12 HOH HOH . 
I 5 HOH B 69 569 136 HOH HOH . 
I 5 HOH B 70 570 191 HOH HOH . 
I 5 HOH B 71 571 202 HOH HOH . 
I 5 HOH B 72 572 63 HOH HOH . 
I 5 HOH B 73 573 197 HOH HOH . 
I 5 HOH B 74 574 62 HOH HOH . 
I 5 HOH B 75 575 168 HOH HOH . 
I 5 HOH B 76 576 107 HOH HOH . 
I 5 HOH B 77 577 200 HOH HOH . 
I 5 HOH B 78 578 194 HOH HOH . 
I 5 HOH B 79 579 100 HOH HOH . 
I 5 HOH B 80 580 32 HOH HOH . 
I 5 HOH B 81 581 142 HOH HOH . 
I 5 HOH B 82 582 186 HOH HOH . 
I 5 HOH B 83 583 161 HOH HOH . 
I 5 HOH B 84 584 134 HOH HOH . 
I 5 HOH B 85 585 157 HOH HOH . 
I 5 HOH B 86 586 180 HOH HOH . 
I 5 HOH B 87 587 102 HOH HOH . 
I 5 HOH B 88 588 96 HOH HOH . 
J 5 HOH C 1 101 207 HOH HOH . 
J 5 HOH C 2 102 90 HOH HOH . 
J 5 HOH C 3 103 38 HOH HOH . 
J 5 HOH C 4 104 151 HOH HOH . 
J 5 HOH C 5 105 16 HOH HOH . 
J 5 HOH C 6 106 91 HOH HOH . 
J 5 HOH C 7 107 133 HOH HOH . 
J 5 HOH C 8 108 199 HOH HOH . 
J 5 HOH C 9 109 122 HOH HOH . 
J 5 HOH C 10 110 152 HOH HOH . 
J 5 HOH C 11 111 206 HOH HOH . 
J 5 HOH C 12 112 145 HOH HOH . 
J 5 HOH C 13 113 156 HOH HOH . 
J 5 HOH C 14 114 183 HOH HOH . 
J 5 HOH C 15 115 85 HOH HOH . 
J 5 HOH C 16 116 115 HOH HOH . 
J 5 HOH C 17 117 101 HOH HOH . 
J 5 HOH C 18 118 126 HOH HOH . 
J 5 HOH C 19 119 125 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           ZN 
_atom_site.label_atom_id         ZN 
_atom_site.label_comp_id         ZN 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         D 
_atom_site.label_entity_id       3 
_atom_site.Cartn_x               13.96 
_atom_site.Cartn_y               -6.299 
_atom_site.Cartn_z               13.786 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        40.39 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          ZN 
_atom_site.auth_comp_id          ZN 
_atom_site.auth_seq_id           401 
_atom_site.auth_asym_id          A 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              16 
_model_server_stats.parse_time_ms           16 
_model_server_stats.create_model_time_ms    23 
_model_server_stats.query_time_ms           318 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           1 
#