data_5ZVB # _model_server_result.job_id qGkR6cCcTl8tDwD0176Z_Q _model_server_result.datetime_utc '2024-12-23 03:37:55' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5zvb # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":402}' # _entry.id 5ZVB # _exptl.entry_id 5ZVB _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 136.989 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CACODYLATE ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5ZVB _cell.length_a 60.99 _cell.length_b 92.702 _cell.length_c 93.674 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5ZVB _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,H,J 1 1 B,F,G,I 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 E N N ? 4 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 B SG CYS 84 B CYS 248 1_555 B SG CYS 89 B CYS 253 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.406 ? covale ? covale1 A C ALA 30 A ALA -24 1_555 A N MSE 31 A MSE -23 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale2 A C MSE 31 A MSE -23 1_555 A N ASP 32 A ASP -22 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale3 A C THR 57 A THR 221 1_555 A N MSE 58 A MSE 222 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.322 ? covale ? covale4 A C MSE 58 A MSE 222 1_555 A N GLU 59 A GLU 223 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale5 A C ILE 166 A ILE 330 1_555 A N MSE 167 A MSE 331 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? covale ? covale6 A C MSE 167 A MSE 331 1_555 A N GLY 168 A GLY 332 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? covale ? covale7 B C ALA 30 B ALA -24 1_555 B N MSE 31 B MSE -23 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? covale ? covale8 B C MSE 31 B MSE -23 1_555 B N ASP 32 B ASP -22 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.338 ? covale ? covale9 B C THR 57 B THR 221 1_555 B N MSE 58 B MSE 222 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.321 ? covale ? covale10 B C MSE 58 B MSE 222 1_555 B N GLU 59 B GLU 223 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale11 B C ILE 166 B ILE 330 1_555 B N MSE 167 B MSE 331 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale12 B C MSE 167 B MSE 331 1_555 B N GLY 168 B GLY 332 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? metalc ? metalc1 A ND1 HIS 85 A HIS 249 1_555 D ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.192 ? metalc ? metalc2 A SG CYS 116 A CYS 280 1_555 D ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.213 ? metalc ? metalc3 A SG CYS 119 A CYS 283 1_555 D ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.224 ? metalc ? metalc4 D ZN ZN . A ZN 401 1_555 E O1 CAC . A CAC 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.167 ? metalc ? metalc5 B ND1 HIS 85 B HIS 249 1_555 F ZN ZN . B ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.149 ? metalc ? metalc6 B SG CYS 116 B CYS 280 1_555 F ZN ZN . B ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.199 ? metalc ? metalc7 B SG CYS 119 B CYS 283 1_555 F ZN ZN . B ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.195 ? metalc ? metalc8 F ZN ZN . B ZN 401 1_555 G O1 CAC . B CAC 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.184 ? # _chem_comp.formula 'C2 H6 As O2 -1' _chem_comp.formula_weight 136.989 _chem_comp.id CAC _chem_comp.mon_nstd_flag . _chem_comp.name 'CACODYLATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms dimethylarsinate # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag AS O1 CAC doub 70 n n AS O2 CAC sing 71 n n AS C1 CAC sing 72 n n AS C2 CAC sing 73 n n C1 H11 CAC sing 74 n n C1 H12 CAC sing 75 n n C1 H13 CAC sing 76 n n C2 H21 CAC sing 77 n n C2 H22 CAC sing 78 n n C2 H23 CAC sing 79 n n # _atom_sites.entry_id 5ZVB _atom_sites.fract_transf_matrix[1][1] 0.016396 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010787 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010675 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 3 ZN A 1 401 1 ZN ZN . E 4 CAC A 1 402 2 CAC CAC . F 3 ZN B 1 401 2 ZN ZN . G 4 CAC B 1 402 1 CAC CAC . H 5 HOH A 1 501 10 HOH HOH . H 5 HOH A 2 502 66 HOH HOH . H 5 HOH A 3 503 5 HOH HOH . H 5 HOH A 4 504 98 HOH HOH . H 5 HOH A 5 505 8 HOH HOH . H 5 HOH A 6 506 203 HOH HOH . H 5 HOH A 7 507 185 HOH HOH . H 5 HOH A 8 508 184 HOH HOH . H 5 HOH A 9 509 172 HOH HOH . H 5 HOH A 10 510 78 HOH HOH . H 5 HOH A 11 511 79 HOH HOH . H 5 HOH A 12 512 147 HOH HOH . H 5 HOH A 13 513 15 HOH HOH . H 5 HOH A 14 514 31 HOH HOH . H 5 HOH A 15 515 1 HOH HOH . H 5 HOH A 16 516 165 HOH HOH . H 5 HOH A 17 517 68 HOH HOH . H 5 HOH A 18 518 179 HOH HOH . H 5 HOH A 19 519 37 HOH HOH . H 5 HOH A 20 520 195 HOH HOH . H 5 HOH A 21 521 188 HOH HOH . H 5 HOH A 22 522 58 HOH HOH . H 5 HOH A 23 523 146 HOH HOH . H 5 HOH A 24 524 154 HOH HOH . H 5 HOH A 25 525 139 HOH HOH . H 5 HOH A 26 526 82 HOH HOH . H 5 HOH A 27 527 45 HOH HOH . H 5 HOH A 28 528 47 HOH HOH . H 5 HOH A 29 529 54 HOH HOH . H 5 HOH A 30 530 40 HOH HOH . H 5 HOH A 31 531 210 HOH HOH . H 5 HOH A 32 532 11 HOH HOH . H 5 HOH A 33 533 173 HOH HOH . H 5 HOH A 34 534 30 HOH HOH . H 5 HOH A 35 535 170 HOH HOH . H 5 HOH A 36 536 211 HOH HOH . H 5 HOH A 37 537 44 HOH HOH . H 5 HOH A 38 538 201 HOH HOH . H 5 HOH A 39 539 169 HOH HOH . H 5 HOH A 40 540 71 HOH HOH . H 5 HOH A 41 541 13 HOH HOH . H 5 HOH A 42 542 23 HOH HOH . H 5 HOH A 43 543 162 HOH HOH . H 5 HOH A 44 544 209 HOH HOH . H 5 HOH A 45 545 135 HOH HOH . H 5 HOH A 46 546 18 HOH HOH . H 5 HOH A 47 547 93 HOH HOH . H 5 HOH A 48 548 153 HOH HOH . H 5 HOH A 49 549 129 HOH HOH . H 5 HOH A 50 550 4 HOH HOH . H 5 HOH A 51 551 50 HOH HOH . H 5 HOH A 52 552 114 HOH HOH . H 5 HOH A 53 553 75 HOH HOH . H 5 HOH A 54 554 67 HOH HOH . H 5 HOH A 55 555 77 HOH HOH . H 5 HOH A 56 556 110 HOH HOH . H 5 HOH A 57 557 35 HOH HOH . H 5 HOH A 58 558 167 HOH HOH . H 5 HOH A 59 559 160 HOH HOH . H 5 HOH A 60 560 144 HOH HOH . H 5 HOH A 61 561 22 HOH HOH . H 5 HOH A 62 562 193 HOH HOH . H 5 HOH A 63 563 25 HOH HOH . H 5 HOH A 64 564 51 HOH HOH . H 5 HOH A 65 565 204 HOH HOH . H 5 HOH A 66 566 208 HOH HOH . H 5 HOH A 67 567 177 HOH HOH . H 5 HOH A 68 568 80 HOH HOH . H 5 HOH A 69 569 166 HOH HOH . H 5 HOH A 70 570 83 HOH HOH . H 5 HOH A 71 571 59 HOH HOH . H 5 HOH A 72 572 187 HOH HOH . H 5 HOH A 73 573 140 HOH HOH . H 5 HOH A 74 574 176 HOH HOH . H 5 HOH A 75 575 95 HOH HOH . H 5 HOH A 76 576 189 HOH HOH . H 5 HOH A 77 577 14 HOH HOH . H 5 HOH A 78 578 48 HOH HOH . H 5 HOH A 79 579 131 HOH HOH . H 5 HOH A 80 580 64 HOH HOH . H 5 HOH A 81 581 56 HOH HOH . H 5 HOH A 82 582 181 HOH HOH . H 5 HOH A 83 583 159 HOH HOH . H 5 HOH A 84 584 182 HOH HOH . H 5 HOH A 85 585 104 HOH HOH . H 5 HOH A 86 586 150 HOH HOH . H 5 HOH A 87 587 164 HOH HOH . H 5 HOH A 88 588 88 HOH HOH . H 5 HOH A 89 589 148 HOH HOH . H 5 HOH A 90 590 112 HOH HOH . H 5 HOH A 91 591 128 HOH HOH . H 5 HOH A 92 592 87 HOH HOH . H 5 HOH A 93 593 127 HOH HOH . H 5 HOH A 94 594 109 HOH HOH . H 5 HOH A 95 595 163 HOH HOH . H 5 HOH A 96 596 57 HOH HOH . H 5 HOH A 97 597 190 HOH HOH . H 5 HOH A 98 598 28 HOH HOH . H 5 HOH A 99 599 137 HOH HOH . H 5 HOH A 100 600 132 HOH HOH . H 5 HOH A 101 601 130 HOH HOH . H 5 HOH A 102 602 97 HOH HOH . H 5 HOH A 103 603 105 HOH HOH . H 5 HOH A 104 604 178 HOH HOH . I 5 HOH B 1 501 143 HOH HOH . I 5 HOH B 2 502 70 HOH HOH . I 5 HOH B 3 503 42 HOH HOH . I 5 HOH B 4 504 158 HOH HOH . I 5 HOH B 5 505 123 HOH HOH . I 5 HOH B 6 506 33 HOH HOH . I 5 HOH B 7 507 116 HOH HOH . I 5 HOH B 8 508 20 HOH HOH . I 5 HOH B 9 509 92 HOH HOH . I 5 HOH B 10 510 113 HOH HOH . I 5 HOH B 11 511 121 HOH HOH . I 5 HOH B 12 512 21 HOH HOH . I 5 HOH B 13 513 106 HOH HOH . I 5 HOH B 14 514 53 HOH HOH . I 5 HOH B 15 515 29 HOH HOH . I 5 HOH B 16 516 198 HOH HOH . I 5 HOH B 17 517 3 HOH HOH . I 5 HOH B 18 518 111 HOH HOH . I 5 HOH B 19 519 61 HOH HOH . I 5 HOH B 20 520 69 HOH HOH . I 5 HOH B 21 521 60 HOH HOH . I 5 HOH B 22 522 138 HOH HOH . I 5 HOH B 23 523 41 HOH HOH . I 5 HOH B 24 524 19 HOH HOH . I 5 HOH B 25 525 155 HOH HOH . I 5 HOH B 26 526 205 HOH HOH . I 5 HOH B 27 527 39 HOH HOH . I 5 HOH B 28 528 141 HOH HOH . I 5 HOH B 29 529 7 HOH HOH . I 5 HOH B 30 530 27 HOH HOH . I 5 HOH B 31 531 103 HOH HOH . I 5 HOH B 32 532 26 HOH HOH . I 5 HOH B 33 533 65 HOH HOH . I 5 HOH B 34 534 76 HOH HOH . I 5 HOH B 35 535 24 HOH HOH . I 5 HOH B 36 536 52 HOH HOH . I 5 HOH B 37 537 192 HOH HOH . I 5 HOH B 38 538 6 HOH HOH . I 5 HOH B 39 539 124 HOH HOH . I 5 HOH B 40 540 74 HOH HOH . I 5 HOH B 41 541 73 HOH HOH . I 5 HOH B 42 542 117 HOH HOH . I 5 HOH B 43 543 99 HOH HOH . I 5 HOH B 44 544 89 HOH HOH . I 5 HOH B 45 545 49 HOH HOH . I 5 HOH B 46 546 120 HOH HOH . I 5 HOH B 47 547 149 HOH HOH . I 5 HOH B 48 548 2 HOH HOH . I 5 HOH B 49 549 94 HOH HOH . I 5 HOH B 50 550 118 HOH HOH . I 5 HOH B 51 551 46 HOH HOH . I 5 HOH B 52 552 9 HOH HOH . I 5 HOH B 53 553 196 HOH HOH . I 5 HOH B 54 554 175 HOH HOH . I 5 HOH B 55 555 34 HOH HOH . I 5 HOH B 56 556 119 HOH HOH . I 5 HOH B 57 557 81 HOH HOH . I 5 HOH B 58 558 84 HOH HOH . I 5 HOH B 59 559 55 HOH HOH . I 5 HOH B 60 560 108 HOH HOH . I 5 HOH B 61 561 171 HOH HOH . I 5 HOH B 62 562 43 HOH HOH . I 5 HOH B 63 563 86 HOH HOH . I 5 HOH B 64 564 17 HOH HOH . I 5 HOH B 65 565 36 HOH HOH . I 5 HOH B 66 566 174 HOH HOH . I 5 HOH B 67 567 72 HOH HOH . I 5 HOH B 68 568 12 HOH HOH . I 5 HOH B 69 569 136 HOH HOH . I 5 HOH B 70 570 191 HOH HOH . I 5 HOH B 71 571 202 HOH HOH . I 5 HOH B 72 572 63 HOH HOH . I 5 HOH B 73 573 197 HOH HOH . I 5 HOH B 74 574 62 HOH HOH . I 5 HOH B 75 575 168 HOH HOH . I 5 HOH B 76 576 107 HOH HOH . I 5 HOH B 77 577 200 HOH HOH . I 5 HOH B 78 578 194 HOH HOH . I 5 HOH B 79 579 100 HOH HOH . I 5 HOH B 80 580 32 HOH HOH . I 5 HOH B 81 581 142 HOH HOH . I 5 HOH B 82 582 186 HOH HOH . I 5 HOH B 83 583 161 HOH HOH . I 5 HOH B 84 584 134 HOH HOH . I 5 HOH B 85 585 157 HOH HOH . I 5 HOH B 86 586 180 HOH HOH . I 5 HOH B 87 587 102 HOH HOH . I 5 HOH B 88 588 96 HOH HOH . J 5 HOH C 1 101 207 HOH HOH . J 5 HOH C 2 102 90 HOH HOH . J 5 HOH C 3 103 38 HOH HOH . J 5 HOH C 4 104 151 HOH HOH . J 5 HOH C 5 105 16 HOH HOH . J 5 HOH C 6 106 91 HOH HOH . J 5 HOH C 7 107 133 HOH HOH . J 5 HOH C 8 108 199 HOH HOH . J 5 HOH C 9 109 122 HOH HOH . J 5 HOH C 10 110 152 HOH HOH . J 5 HOH C 11 111 206 HOH HOH . J 5 HOH C 12 112 145 HOH HOH . J 5 HOH C 13 113 156 HOH HOH . J 5 HOH C 14 114 183 HOH HOH . J 5 HOH C 15 115 85 HOH HOH . J 5 HOH C 16 116 115 HOH HOH . J 5 HOH C 17 117 101 HOH HOH . J 5 HOH C 18 118 126 HOH HOH . J 5 HOH C 19 119 125 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 AS AS CAC . . . E 4 16.097 -8.984 12.618 0.8 110.02 ? AS CAC 402 A 1 HETATM 2 O O1 CAC . . . E 4 15.068 -7.591 12.445 0.8 47.81 ? O1 CAC 402 A 1 HETATM 3 O O2 CAC . . . E 4 17.573 -8.519 13.413 0.8 63.22 ? O2 CAC 402 A 1 HETATM 4 C C1 CAC . . . E 4 16.511 -9.715 10.845 0.8 68.02 ? C1 CAC 402 A 1 HETATM 5 C C2 CAC . . . E 4 15.177 -10.346 13.689 0.8 79.34 ? C2 CAC 402 A 1 # _model_server_stats.io_time_ms 25 _model_server_stats.parse_time_ms 21 _model_server_stats.create_model_time_ms 15 _model_server_stats.query_time_ms 286 _model_server_stats.encode_time_ms 11 _model_server_stats.element_count 5 #