data_5ZWE # _model_server_result.job_id Ud2ggbhsmC4B3Y-GI0wn1Q _model_server_result.datetime_utc '2025-07-02 14:00:50' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5zwe # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":501}' # _entry.id 5ZWE # _exptl.entry_id 5ZWE _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 398.578 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (6R)-6-[(1R,3aS,4E,7aR)-7a-methyl-4-[2-[(3R,5R)-4-methylidene-3,5-bis(oxidanyl)cyclohexylidene]ethylidene]-2,3,3a,5,6,7-hexahydro-1H-inden-1-yl]hept-1-en-3-one _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 95.98 _cell.angle_gamma 90 _cell.entry_id 5ZWE _cell.length_a 153.53 _cell.length_b 42.44 _cell.length_c 41.87 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5ZWE _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id NE2 _struct_conn.ptnr1_label_comp_id HIS _struct_conn.ptnr1_label_seq_id 149 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id HIS _struct_conn.ptnr1_auth_seq_id 301 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id C _struct_conn.ptnr2_label_atom_id C25 _struct_conn.ptnr2_label_comp_id 9K0 _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id 9K0 _struct_conn.ptnr2_auth_seq_id 501 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id B _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.487 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C26 H38 O3' _chem_comp.formula_weight 398.578 _chem_comp.id 9K0 _chem_comp.mon_nstd_flag . _chem_comp.name (6R)-6-[(1R,3aS,4E,7aR)-7a-methyl-4-[2-[(3R,5R)-4-methylidene-3,5-bis(oxidanyl)cyclohexylidene]ethylidene]-2,3,3a,5,6,7-hexahydro-1H-inden-1-yl]hept-1-en-3-one _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C21 C2 9K0 doub 1 n n O C3 9K0 sing 2 n n C2 C3 9K0 sing 3 n n C2 C1 9K0 sing 4 n n C3 C4 9K0 sing 5 n n C1 O1 9K0 sing 6 n n C1 C 9K0 sing 7 n n C4 C5 9K0 sing 8 n n C C5 9K0 sing 9 n n C5 C6 9K0 doub 10 n n C6 C7 9K0 sing 11 n n C7 C8 9K0 doub 12 e n C8 C13 9K0 sing 13 n n C8 C9 9K0 sing 14 n n C14 C9 9K0 sing 15 n n C14 C15 9K0 sing 16 n n C17 C10 9K0 sing 17 n n C13 C12 9K0 sing 18 n n C9 C10 9K0 sing 19 n n C15 C16 9K0 sing 20 n n C10 C16 9K0 sing 21 n n C10 C11 9K0 sing 22 n n C12 C11 9K0 sing 23 n n C20 C22 9K0 sing 24 n n C20 C18 9K0 sing 25 n n O2 C23 9K0 doub 26 n n C22 C23 9K0 sing 27 n n C16 C18 9K0 sing 28 n n C23 C24 9K0 sing 29 n n C18 C19 9K0 sing 30 n n C24 C25 9K0 doub 31 n n C24 H1 9K0 sing 32 n n C25 H3 9K0 sing 33 n n C25 H4 9K0 sing 34 n n C22 H6 9K0 sing 35 n n C22 H7 9K0 sing 36 n n C20 H8 9K0 sing 37 n n C20 H9 9K0 sing 38 n n C18 H10 9K0 sing 39 n n C19 H11 9K0 sing 40 n n C19 H12 9K0 sing 41 n n C19 H13 9K0 sing 42 n n C16 H14 9K0 sing 43 n n C15 H15 9K0 sing 44 n n C15 H16 9K0 sing 45 n n C14 H17 9K0 sing 46 n n C14 H18 9K0 sing 47 n n C9 H19 9K0 sing 48 n n C17 H20 9K0 sing 49 n n C17 H21 9K0 sing 50 n n C17 H22 9K0 sing 51 n n C11 H23 9K0 sing 52 n n C11 H24 9K0 sing 53 n n C12 H25 9K0 sing 54 n n C12 H26 9K0 sing 55 n n C13 H27 9K0 sing 56 n n C13 H28 9K0 sing 57 n n C7 H29 9K0 sing 58 n n C6 H30 9K0 sing 59 n n C H31 9K0 sing 60 n n C H32 9K0 sing 61 n n C4 H33 9K0 sing 62 n n C4 H34 9K0 sing 63 n n C3 H35 9K0 sing 64 n n O H36 9K0 sing 65 n n C21 H37 9K0 sing 66 n n C21 H38 9K0 sing 67 n n C1 H39 9K0 sing 68 n n O1 H40 9K0 sing 69 n n # _atom_sites.entry_id 5ZWE _atom_sites.fract_transf_matrix[1][1] 0.006513 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000682 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.023563 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.024014 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 9K0 A 1 501 1 9K0 YMH . D 4 HOH A 1 601 9 HOH HOH . D 4 HOH A 2 602 21 HOH HOH . D 4 HOH A 3 603 6 HOH HOH . D 4 HOH A 4 604 4 HOH HOH . D 4 HOH A 5 605 2 HOH HOH . D 4 HOH A 6 606 13 HOH HOH . D 4 HOH A 7 607 7 HOH HOH . D 4 HOH A 8 608 10 HOH HOH . D 4 HOH A 9 609 11 HOH HOH . D 4 HOH A 10 610 22 HOH HOH . D 4 HOH A 11 611 14 HOH HOH . D 4 HOH A 12 612 16 HOH HOH . D 4 HOH A 13 613 17 HOH HOH . D 4 HOH A 14 614 18 HOH HOH . D 4 HOH A 15 615 20 HOH HOH . D 4 HOH A 16 616 19 HOH HOH . D 4 HOH A 17 617 3 HOH HOH . D 4 HOH A 18 618 8 HOH HOH . D 4 HOH A 19 619 15 HOH HOH . D 4 HOH A 20 620 12 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O2 9K0 . . . C 3 10.395 3.279 26.646 0.7 42.13 ? O2 9K0 501 A 1 HETATM 2 C C23 9K0 . . . C 3 10.416 2.259 27.31 0.7 42.8 ? C23 9K0 501 A 1 HETATM 3 C C24 9K0 . . . C 3 9.633 2.218 28.605 0.7 44.04 ? C24 9K0 501 A 1 HETATM 4 C C25 9K0 . . . C 3 9.37 0.763 28.975 0.7 44.1 ? C25 9K0 501 A 1 HETATM 5 C C22 9K0 . . . C 3 11.215 1.06 26.824 1 41.75 ? C22 9K0 501 A 1 HETATM 6 C C20 9K0 . . . C 3 12.634 1.438 26.426 1 41.24 ? C20 9K0 501 A 1 HETATM 7 C C18 9K0 . . . C 3 13.265 2.346 27.466 1 40.42 ? C18 9K0 501 A 1 HETATM 8 C C19 9K0 . . . C 3 13.849 1.544 28.619 1 40.14 ? C19 9K0 501 A 1 HETATM 9 C C16 9K0 . . . C 3 14.301 3.276 26.853 1 39.02 ? C16 9K0 501 A 1 HETATM 10 C C15 9K0 . . . C 3 15.113 2.663 25.709 1 38.75 ? C15 9K0 501 A 1 HETATM 11 C C14 9K0 . . . C 3 15.468 3.82 24.771 1 37.91 ? C14 9K0 501 A 1 HETATM 12 C C9 9K0 . . . C 3 14.926 5.037 25.501 1 37.71 ? C9 9K0 501 A 1 HETATM 13 C C10 9K0 . . . C 3 13.719 4.54 26.247 1 38.09 ? C10 9K0 501 A 1 HETATM 14 C C17 9K0 . . . C 3 12.597 4.206 25.276 1 37.96 ? C17 9K0 501 A 1 HETATM 15 C C11 9K0 . . . C 3 13.274 5.619 27.214 1 37.98 ? C11 9K0 501 A 1 HETATM 16 C C12 9K0 . . . C 3 12.81 6.829 26.41 1 37.51 ? C12 9K0 501 A 1 HETATM 17 C C13 9K0 . . . C 3 13.87 7.369 25.447 1 37.29 ? C13 9K0 501 A 1 HETATM 18 C C8 9K0 . . . C 3 14.585 6.257 24.718 1 37.33 ? C8 9K0 501 A 1 HETATM 19 C C7 9K0 . . . C 3 14.916 6.373 23.426 1 37.14 ? C7 9K0 501 A 1 HETATM 20 C C6 9K0 . . . C 3 14.589 7.59 22.692 1 36.25 ? C6 9K0 501 A 1 HETATM 21 C C5 9K0 . . . C 3 14.316 7.56 21.385 1 36.15 ? C5 9K0 501 A 1 HETATM 22 C C 9K0 . . . C 3 13.986 8.846 20.662 1 36.28 ? C 9K0 501 A 1 HETATM 23 C C4 9K0 . . . C 3 14.315 6.247 20.628 1 35.95 ? C4 9K0 501 A 1 HETATM 24 C C3 9K0 . . . C 3 14.775 6.355 19.171 1 35.61 ? C3 9K0 501 A 1 HETATM 25 O O 9K0 . . . C 3 14.248 5.248 18.44 1 34.86 ? O 9K0 501 A 1 HETATM 26 C C2 9K0 . . . C 3 14.327 7.639 18.539 1 36.01 ? C2 9K0 501 A 1 HETATM 27 C C21 9K0 . . . C 3 13.682 7.673 17.388 1 35.96 ? C21 9K0 501 A 1 HETATM 28 C C1 9K0 . . . C 3 14.637 8.896 19.282 1 36.17 ? C1 9K0 501 A 1 HETATM 29 O O1 9K0 . . . C 3 16.053 8.978 19.427 1 34.4 ? O1 9K0 501 A 1 # _model_server_stats.io_time_ms 53 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 338 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 29 #