data_5ZWF
#
_model_server_result.job_id            wIdQV4XwH3mCDMccH_mRow 
_model_server_result.datetime_utc      '2024-11-22 16:14:42' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5zwf 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":501}' 
#
_entry.id    5ZWF 
#
_exptl.entry_id    5ZWF 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              412.605 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            (E,7R)-7-[(1R,3aS,4E,7aR)-7a-methyl-4-[2-[(3R,5R)-4-methylidene-3,5-bis(oxidanyl)cyclohexylidene]ethylidene]-2,3,3a,5,6,7-hexahydro-1H-inden-1-yl]oct-2-en-4-one 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          96.22 
_cell.angle_gamma         90 
_cell.entry_id            5ZWF 
_cell.length_a            153.56 
_cell.length_b            41.73 
_cell.length_c            42.02 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5ZWF 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_struct_conn.conn_type_id                   covale 
_struct_conn.details                        ? 
_struct_conn.id                             covale1 
_struct_conn.ptnr1_label_asym_id            A 
_struct_conn.ptnr1_label_atom_id            NE2 
_struct_conn.ptnr1_label_comp_id            HIS 
_struct_conn.ptnr1_label_seq_id             149 
_struct_conn.ptnr1_auth_asym_id             A 
_struct_conn.ptnr1_auth_comp_id             HIS 
_struct_conn.ptnr1_auth_seq_id              301 
_struct_conn.ptnr1_symmetry                 1_555 
_struct_conn.ptnr2_label_asym_id            C 
_struct_conn.ptnr2_label_atom_id            C25 
_struct_conn.ptnr2_label_comp_id            9KR 
_struct_conn.ptnr2_label_seq_id             . 
_struct_conn.ptnr2_auth_asym_id             A 
_struct_conn.ptnr2_auth_comp_id             9KR 
_struct_conn.ptnr2_auth_seq_id              501 
_struct_conn.ptnr2_symmetry                 1_555 
_struct_conn.pdbx_ptnr1_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr1_label_alt_id        ? 
_struct_conn.pdbx_ptnr1_standard_comp_id    ? 
_struct_conn.pdbx_ptnr2_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr2_label_alt_id        ? 
_struct_conn.pdbx_ptnr3_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr3_label_alt_id        ? 
_struct_conn.pdbx_ptnr3_label_asym_id       ? 
_struct_conn.pdbx_ptnr3_label_atom_id       ? 
_struct_conn.pdbx_ptnr3_label_comp_id       ? 
_struct_conn.pdbx_ptnr3_label_seq_id        ? 
_struct_conn.pdbx_PDB_id                    ? 
_struct_conn.pdbx_dist_value                1.358 
_struct_conn.pdbx_value_order               ? 
#
_chem_comp.formula           'C27 H40 O3' 
_chem_comp.formula_weight    412.605 
_chem_comp.id                9KR 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              (E,7R)-7-[(1R,3aS,4E,7aR)-7a-methyl-4-[2-[(3R,5R)-4-methylidene-3,5-bis(oxidanyl)cyclohexylidene]ethylidene]-2,3,3a,5,6,7-hexahydro-1H-inden-1-yl]oct-2-en-4-one 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C21 C2 9KR doub 1 n n 
O1 C1 9KR sing 2 n n 
C2 C1 9KR sing 3 n n 
C2 C3 9KR sing 4 n n 
C1 C 9KR sing 5 n n 
C3 O 9KR sing 6 n n 
C3 C4 9KR sing 7 n n 
C C5 9KR sing 8 n n 
C4 C5 9KR sing 9 n n 
C5 C6 9KR doub 10 n n 
C6 C7 9KR sing 11 n n 
C7 C8 9KR doub 12 e n 
C8 C9 9KR sing 13 n n 
C8 C13 9KR sing 14 n n 
C14 C9 9KR sing 15 n n 
C14 C15 9KR sing 16 n n 
C17 C10 9KR sing 17 n n 
C9 C10 9KR sing 18 n n 
C13 C12 9KR sing 19 n n 
C15 C16 9KR sing 20 n n 
C10 C16 9KR sing 21 n n 
C10 C11 9KR sing 22 n n 
C12 C11 9KR sing 23 n n 
C20 C22 9KR sing 24 n n 
C20 C18 9KR sing 25 n n 
C16 C18 9KR sing 26 n n 
C22 C23 9KR sing 27 n n 
O2 C23 9KR doub 28 n n 
C18 C19 9KR sing 29 n n 
C23 C24 9KR sing 30 n n 
C24 C25 9KR doub 31 e n 
C25 C26 9KR sing 32 n n 
C24 H1 9KR sing 33 n n 
C25 H3 9KR sing 34 n n 
C26 H5 9KR sing 35 n n 
C26 H6 9KR sing 36 n n 
C26 H7 9KR sing 37 n n 
C22 H8 9KR sing 38 n n 
C22 H9 9KR sing 39 n n 
C20 H10 9KR sing 40 n n 
C20 H11 9KR sing 41 n n 
C18 H12 9KR sing 42 n n 
C19 H13 9KR sing 43 n n 
C19 H14 9KR sing 44 n n 
C19 H15 9KR sing 45 n n 
C16 H16 9KR sing 46 n n 
C15 H17 9KR sing 47 n n 
C15 H18 9KR sing 48 n n 
C14 H19 9KR sing 49 n n 
C14 H20 9KR sing 50 n n 
C9 H21 9KR sing 51 n n 
C17 H22 9KR sing 52 n n 
C17 H23 9KR sing 53 n n 
C17 H24 9KR sing 54 n n 
C11 H25 9KR sing 55 n n 
C11 H26 9KR sing 56 n n 
C12 H27 9KR sing 57 n n 
C12 H28 9KR sing 58 n n 
C13 H29 9KR sing 59 n n 
C13 H30 9KR sing 60 n n 
C7 H31 9KR sing 61 n n 
C6 H32 9KR sing 62 n n 
C H33 9KR sing 63 n n 
C H34 9KR sing 64 n n 
C4 H35 9KR sing 65 n n 
C4 H36 9KR sing 66 n n 
C3 H37 9KR sing 67 n n 
O H38 9KR sing 68 n n 
C21 H39 9KR sing 69 n n 
C21 H40 9KR sing 70 n n 
C1 H41 9KR sing 71 n n 
O1 H42 9KR sing 72 n n 
#
_atom_sites.entry_id                     5ZWF 
_atom_sites.fract_transf_matrix[1][1]    0.006512 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.00071 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.023964 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.023939 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 9KR A 1 501 1 9KR YMH . 
D 4 HOH A 1 601 151 HOH HOH . 
D 4 HOH A 2 602 149 HOH HOH . 
D 4 HOH A 3 603 57 HOH HOH . 
D 4 HOH A 4 604 136 HOH HOH . 
D 4 HOH A 5 605 142 HOH HOH . 
D 4 HOH A 6 606 150 HOH HOH . 
D 4 HOH A 7 607 153 HOH HOH . 
D 4 HOH A 8 608 41 HOH HOH . 
D 4 HOH A 9 609 141 HOH HOH . 
D 4 HOH A 10 610 127 HOH HOH . 
D 4 HOH A 11 611 135 HOH HOH . 
D 4 HOH A 12 612 29 HOH HOH . 
D 4 HOH A 13 613 118 HOH HOH . 
D 4 HOH A 14 614 7 HOH HOH . 
D 4 HOH A 15 615 14 HOH HOH . 
D 4 HOH A 16 616 16 HOH HOH . 
D 4 HOH A 17 617 138 HOH HOH . 
D 4 HOH A 18 618 119 HOH HOH . 
D 4 HOH A 19 619 56 HOH HOH . 
D 4 HOH A 20 620 143 HOH HOH . 
D 4 HOH A 21 621 32 HOH HOH . 
D 4 HOH A 22 622 160 HOH HOH . 
D 4 HOH A 23 623 134 HOH HOH . 
D 4 HOH A 24 624 133 HOH HOH . 
D 4 HOH A 25 625 6 HOH HOH . 
D 4 HOH A 26 626 1 HOH HOH . 
D 4 HOH A 27 627 131 HOH HOH . 
D 4 HOH A 28 628 33 HOH HOH . 
D 4 HOH A 29 629 21 HOH HOH . 
D 4 HOH A 30 630 129 HOH HOH . 
D 4 HOH A 31 631 11 HOH HOH . 
D 4 HOH A 32 632 144 HOH HOH . 
D 4 HOH A 33 633 159 HOH HOH . 
D 4 HOH A 34 634 15 HOH HOH . 
D 4 HOH A 35 635 147 HOH HOH . 
D 4 HOH A 36 636 4 HOH HOH . 
D 4 HOH A 37 637 26 HOH HOH . 
D 4 HOH A 38 638 30 HOH HOH . 
D 4 HOH A 39 639 17 HOH HOH . 
D 4 HOH A 40 640 83 HOH HOH . 
D 4 HOH A 41 641 128 HOH HOH . 
D 4 HOH A 42 642 140 HOH HOH . 
D 4 HOH A 43 643 23 HOH HOH . 
D 4 HOH A 44 644 126 HOH HOH . 
D 4 HOH A 45 645 25 HOH HOH . 
D 4 HOH A 46 646 12 HOH HOH . 
D 4 HOH A 47 647 146 HOH HOH . 
D 4 HOH A 48 648 145 HOH HOH . 
D 4 HOH A 49 649 22 HOH HOH . 
D 4 HOH A 50 650 165 HOH HOH . 
D 4 HOH A 51 651 130 HOH HOH . 
D 4 HOH A 52 652 60 HOH HOH . 
D 4 HOH A 53 653 10 HOH HOH . 
D 4 HOH A 54 654 37 HOH HOH . 
D 4 HOH A 55 655 53 HOH HOH . 
D 4 HOH A 56 656 44 HOH HOH . 
D 4 HOH A 57 657 137 HOH HOH . 
D 4 HOH A 58 658 155 HOH HOH . 
D 4 HOH A 59 659 116 HOH HOH . 
D 4 HOH A 60 660 161 HOH HOH . 
D 4 HOH A 61 661 13 HOH HOH . 
D 4 HOH A 62 662 156 HOH HOH . 
D 4 HOH A 63 663 164 HOH HOH . 
D 4 HOH A 64 664 162 HOH HOH . 
D 4 HOH A 65 665 62 HOH HOH . 
D 4 HOH A 66 666 154 HOH HOH . 
D 4 HOH A 67 667 84 HOH HOH . 
D 4 HOH A 68 668 19 HOH HOH . 
D 4 HOH A 69 669 163 HOH HOH . 
D 4 HOH A 70 670 74 HOH HOH . 
D 4 HOH A 71 671 152 HOH HOH . 
D 4 HOH A 72 672 158 HOH HOH . 
E 4 HOH C 1 701 9 HOH HOH . 
E 4 HOH C 2 702 38 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O O2 9KR . . . C 3 10.26 2.673 27.592 0.7 41.91 ? O2 9KR 501 A 1 
HETATM 2 C C23 9KR . . . C 3 10.203 1.482 27.948 0.7 38.37 ? C23 9KR 501 A 1 
HETATM 3 C C24 9KR . . . C 3 8.96 0.974 28.724 0.7 37.4 ? C24 9KR 501 A 1 
HETATM 4 C C25 9KR . . . C 3 9.189 -0.283 29.629 0.7 37.99 ? C25 9KR 501 A 1 
HETATM 5 C C26 9KR . . . C 3 7.859 -0.97 29.847 0.7 35.99 ? C26 9KR 501 A 1 
HETATM 6 C C22 9KR . . . C 3 11.367 0.563 27.585 1 36.65 ? C22 9KR 501 A 1 
HETATM 7 C C20 9KR . . . C 3 12.498 1.246 26.833 1 34.65 ? C20 9KR 501 A 1 
HETATM 8 C C18 9KR . . . C 3 12.851 2.488 27.615 1 32.52 ? C18 9KR 501 A 1 
HETATM 9 C C19 9KR . . . C 3 13.341 1.998 28.98 1 33.35 ? C19 9KR 501 A 1 
HETATM 10 C C16 9KR . . . C 3 13.922 3.354 26.962 1 30.87 ? C16 9KR 501 A 1 
HETATM 11 C C15 9KR . . . C 3 14.829 2.657 25.927 1 30.69 ? C15 9KR 501 A 1 
HETATM 12 C C14 9KR . . . C 3 15.366 3.777 25.024 1 29.43 ? C14 9KR 501 A 1 
HETATM 13 C C9 9KR . . . C 3 14.767 5.033 25.641 1 28.87 ? C9 9KR 501 A 1 
HETATM 14 C C10 9KR . . . C 3 13.453 4.644 26.269 1 29.59 ? C10 9KR 501 A 1 
HETATM 15 C C17 9KR . . . C 3 12.402 4.396 25.171 1 29.2 ? C17 9KR 501 A 1 
HETATM 16 C C11 9KR . . . C 3 13.056 5.779 27.201 1 28.54 ? C11 9KR 501 A 1 
HETATM 17 C C12 9KR . . . C 3 12.967 7.089 26.404 1 28.92 ? C12 9KR 501 A 1 
HETATM 18 C C13 9KR . . . C 3 14.271 7.45 25.656 1 28.44 ? C13 9KR 501 A 1 
HETATM 19 C C8 9KR . . . C 3 14.613 6.26 24.816 1 28.06 ? C8 9KR 501 A 1 
HETATM 20 C C7 9KR . . . C 3 14.779 6.268 23.489 1 27.57 ? C7 9KR 501 A 1 
HETATM 21 C C6 9KR . . . C 3 14.563 7.471 22.689 1 27.34 ? C6 9KR 501 A 1 
HETATM 22 C C5 9KR . . . C 3 14.312 7.455 21.351 1 27.14 ? C5 9KR 501 A 1 
HETATM 23 C C 9KR . . . C 3 14.272 6.199 20.501 1 26.72 ? C 9KR 501 A 1 
HETATM 24 C C4 9KR . . . C 3 14.059 8.79 20.726 1 26.61 ? C4 9KR 501 A 1 
HETATM 25 C C3 9KR . . . C 3 14.676 8.894 19.339 1 25.98 ? C3 9KR 501 A 1 
HETATM 26 O O 9KR . . . C 3 16.096 8.976 19.343 1 26.9 ? O 9KR 501 A 1 
HETATM 27 C C2 9KR . . . C 3 14.334 7.697 18.527 1 26.09 ? C2 9KR 501 A 1 
HETATM 28 C C21 9KR . . . C 3 13.765 7.849 17.354 1 26.2 ? C21 9KR 501 A 1 
HETATM 29 C C1 9KR . . . C 3 14.72 6.359 19.054 1 26.16 ? C1 9KR 501 A 1 
HETATM 30 O O1 9KR . . . C 3 14.212 5.304 18.205 1 24.04 ? O1 9KR 501 A 1 
#
_model_server_stats.io_time_ms              50 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           272 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           30 
#