data_5ZWI
#
_model_server_result.job_id            CsByVMPYy1ghW2AT7Kefrg 
_model_server_result.datetime_utc      '2025-07-07 14:47:47' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5zwi 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":501}' 
#
_entry.id    5ZWI 
#
_exptl.entry_id    5ZWI 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              410.589 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            (2S)-2-[(1R,3aS,4E,7aR)-7a-methyl-4-[2-[(3R,5R)-4-methylidene-3,5-bis(oxidanyl)cyclohexylidene]ethylidene]-2,3,3a,5,6,7-hexahydro-1H-inden-1-yl]oct-4,6-diene-3-one 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          95.96 
_cell.angle_gamma         90 
_cell.entry_id            5ZWI 
_cell.length_a            153.67 
_cell.length_b            42.4 
_cell.length_c            41.85 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5ZWI 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C27 H38 O3' 
_chem_comp.formula_weight    410.589 
_chem_comp.id                9KX 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              (2S)-2-[(1R,3aS,4E,7aR)-7a-methyl-4-[2-[(3R,5R)-4-methylidene-3,5-bis(oxidanyl)cyclohexylidene]ethylidene]-2,3,3a,5,6,7-hexahydro-1H-inden-1-yl]oct-4,6-diene-3-one 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C9 C2 9KX doub 1 n n 
O C3 9KX sing 2 n n 
C2 C3 9KX sing 3 n n 
C2 C1 9KX sing 4 n n 
C3 C4 9KX sing 5 n n 
C1 O1 9KX sing 6 n n 
C1 C 9KX sing 7 n n 
C4 C5 9KX sing 8 n n 
C C5 9KX sing 9 n n 
C5 C6 9KX doub 10 n n 
C6 C7 9KX sing 11 n n 
C7 C8 9KX doub 12 e n 
C8 C10 9KX sing 13 n n 
C8 C14 9KX sing 14 n n 
C15 C10 9KX sing 15 n n 
C15 C16 9KX sing 16 n n 
C10 C11 9KX sing 17 n n 
C14 C13 9KX sing 18 n n 
C18 C11 9KX sing 19 n n 
C16 C17 9KX sing 20 n n 
O2 C21 9KX doub 21 n n 
C11 C17 9KX sing 22 n n 
C11 C12 9KX sing 23 n n 
C13 C12 9KX sing 24 n n 
C21 C22 9KX sing 25 n n 
C21 C19 9KX sing 26 n n 
C17 C19 9KX sing 27 n n 
C25 C26 9KX sing 28 n n 
C25 C24 9KX doub 29 e n 
C22 C23 9KX doub 30 e n 
C23 C24 9KX sing 31 n n 
C19 C20 9KX sing 32 n n 
O1 H1 9KX sing 33 n n 
C1 H2 9KX sing 34 n n 
C3 H3 9KX sing 35 n n 
C4 H4 9KX sing 36 n n 
C4 H5 9KX sing 37 n n 
C6 H6 9KX sing 38 n n 
C7 H7 9KX sing 39 n n 
C9 H8 9KX sing 40 n n 
C9 H9 9KX sing 41 n n 
C10 H10 9KX sing 42 n n 
C12 H11 9KX sing 43 n n 
C12 H12 9KX sing 44 n n 
C13 H13 9KX sing 45 n n 
C13 H14 9KX sing 46 n n 
C14 H15 9KX sing 47 n n 
C14 H16 9KX sing 48 n n 
C15 H17 9KX sing 49 n n 
C15 H18 9KX sing 50 n n 
C16 H19 9KX sing 51 n n 
C16 H20 9KX sing 52 n n 
C17 H21 9KX sing 53 n n 
C18 H22 9KX sing 54 n n 
C18 H23 9KX sing 55 n n 
C18 H24 9KX sing 56 n n 
C19 H25 9KX sing 57 n n 
C20 H26 9KX sing 58 n n 
C20 H27 9KX sing 59 n n 
C20 H28 9KX sing 60 n n 
C22 H29 9KX sing 61 n n 
C23 H30 9KX sing 62 n n 
C24 H31 9KX sing 63 n n 
C25 H32 9KX sing 64 n n 
C26 H33 9KX sing 65 n n 
C26 H34 9KX sing 66 n n 
C26 H35 9KX sing 67 n n 
O H36 9KX sing 68 n n 
C H37 9KX sing 69 n n 
C H38 9KX sing 70 n n 
#
_atom_sites.entry_id                     5ZWI 
_atom_sites.fract_transf_matrix[1][1]    0.006507 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.000679 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.023585 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.024025 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 9KX A 1 501 1 9KX PH1 . 
D 4 HOH A 1 601 122 HOH HOH . 
D 4 HOH A 2 602 32 HOH HOH . 
D 4 HOH A 3 603 46 HOH HOH . 
D 4 HOH A 4 604 31 HOH HOH . 
D 4 HOH A 5 605 143 HOH HOH . 
D 4 HOH A 6 606 3 HOH HOH . 
D 4 HOH A 7 607 159 HOH HOH . 
D 4 HOH A 8 608 146 HOH HOH . 
D 4 HOH A 9 609 118 HOH HOH . 
D 4 HOH A 10 610 124 HOH HOH . 
D 4 HOH A 11 611 136 HOH HOH . 
D 4 HOH A 12 612 132 HOH HOH . 
D 4 HOH A 13 613 139 HOH HOH . 
D 4 HOH A 14 614 10 HOH HOH . 
D 4 HOH A 15 615 114 HOH HOH . 
D 4 HOH A 16 616 142 HOH HOH . 
D 4 HOH A 17 617 119 HOH HOH . 
D 4 HOH A 18 618 127 HOH HOH . 
D 4 HOH A 19 619 117 HOH HOH . 
D 4 HOH A 20 620 9 HOH HOH . 
D 4 HOH A 21 621 116 HOH HOH . 
D 4 HOH A 22 622 7 HOH HOH . 
D 4 HOH A 23 623 134 HOH HOH . 
D 4 HOH A 24 624 28 HOH HOH . 
D 4 HOH A 25 625 5 HOH HOH . 
D 4 HOH A 26 626 1 HOH HOH . 
D 4 HOH A 27 627 54 HOH HOH . 
D 4 HOH A 28 628 140 HOH HOH . 
D 4 HOH A 29 629 153 HOH HOH . 
D 4 HOH A 30 630 40 HOH HOH . 
D 4 HOH A 31 631 69 HOH HOH . 
D 4 HOH A 32 632 126 HOH HOH . 
D 4 HOH A 33 633 80 HOH HOH . 
D 4 HOH A 34 634 18 HOH HOH . 
D 4 HOH A 35 635 6 HOH HOH . 
D 4 HOH A 36 636 141 HOH HOH . 
D 4 HOH A 37 637 15 HOH HOH . 
D 4 HOH A 38 638 121 HOH HOH . 
D 4 HOH A 39 639 29 HOH HOH . 
D 4 HOH A 40 640 129 HOH HOH . 
D 4 HOH A 41 641 158 HOH HOH . 
D 4 HOH A 42 642 138 HOH HOH . 
D 4 HOH A 43 643 58 HOH HOH . 
D 4 HOH A 44 644 17 HOH HOH . 
D 4 HOH A 45 645 131 HOH HOH . 
D 4 HOH A 46 646 23 HOH HOH . 
D 4 HOH A 47 647 128 HOH HOH . 
D 4 HOH A 48 648 65 HOH HOH . 
D 4 HOH A 49 649 64 HOH HOH . 
D 4 HOH A 50 650 115 HOH HOH . 
D 4 HOH A 51 651 130 HOH HOH . 
D 4 HOH A 52 652 160 HOH HOH . 
D 4 HOH A 53 653 36 HOH HOH . 
D 4 HOH A 54 654 100 HOH HOH . 
D 4 HOH A 55 655 22 HOH HOH . 
D 4 HOH A 56 656 137 HOH HOH . 
D 4 HOH A 57 657 125 HOH HOH . 
D 4 HOH A 58 658 135 HOH HOH . 
D 4 HOH A 59 659 53 HOH HOH . 
D 4 HOH A 60 660 4 HOH HOH . 
D 4 HOH A 61 661 133 HOH HOH . 
D 4 HOH A 62 662 147 HOH HOH . 
D 4 HOH A 63 663 156 HOH HOH . 
D 4 HOH A 64 664 113 HOH HOH . 
D 4 HOH A 65 665 151 HOH HOH . 
D 4 HOH A 66 666 149 HOH HOH . 
E 4 HOH C 1 701 155 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O O1 9KX . . . C 3 16.11 8.894 19.599 1 33.79 ? O1 9KX 501 A 1 
HETATM 2 C C1 9KX . . . C 3 14.714 8.756 19.434 1 36.09 ? C1 9KX 501 A 1 
HETATM 3 C C2 9KX . . . C 3 14.408 7.534 18.611 1 36.46 ? C2 9KX 501 A 1 
HETATM 4 C C3 9KX . . . C 3 14.782 6.194 19.199 1 35.17 ? C3 9KX 501 A 1 
HETATM 5 C C4 9KX . . . C 3 14.31 6.03 20.637 1 36.68 ? C4 9KX 501 A 1 
HETATM 6 C C5 9KX . . . C 3 14.287 7.325 21.451 1 36.49 ? C5 9KX 501 A 1 
HETATM 7 C C6 9KX . . . C 3 14.484 7.296 22.741 1 35.6 ? C6 9KX 501 A 1 
HETATM 8 C C7 9KX . . . C 3 14.733 6.058 23.497 1 35.34 ? C7 9KX 501 A 1 
HETATM 9 C C8 9KX . . . C 3 14.622 6.03 24.815 1 35.07 ? C8 9KX 501 A 1 
HETATM 10 C C9 9KX . . . C 3 13.803 7.657 17.425 1 35.1 ? C9 9KX 501 A 1 
HETATM 11 C C10 9KX . . . C 3 14.901 4.791 25.582 1 36.92 ? C10 9KX 501 A 1 
HETATM 12 C C11 9KX . . . C 3 13.815 4.516 26.556 1 37.29 ? C11 9KX 501 A 1 
HETATM 13 C C12 9KX . . . C 3 13.714 5.677 27.508 1 37.34 ? C12 9KX 501 A 1 
HETATM 14 C C13 9KX . . . C 3 13.31 6.941 26.783 1 34.9 ? C13 9KX 501 A 1 
HETATM 15 C C14 9KX . . . C 3 14.258 7.237 25.624 1 34.89 ? C14 9KX 501 A 1 
HETATM 16 C C15 9KX . . . C 3 15.139 3.456 24.87 1 36.16 ? C15 9KX 501 A 1 
HETATM 17 C C16 9KX . . . C 3 14.792 2.41 25.876 1 36.46 ? C16 9KX 501 A 1 
HETATM 18 C C17 9KX . . . C 3 14.28 3.183 27.106 1 39.27 ? C17 9KX 501 A 1 
HETATM 19 C C18 9KX . . . C 3 12.498 4.362 25.835 1 38.02 ? C18 9KX 501 A 1 
HETATM 20 C C19 9KX . . . C 3 13.242 2.444 27.956 1 41.14 ? C19 9KX 501 A 1 
HETATM 21 C C20 9KX . . . C 3 13.91 1.467 28.919 1 40.98 ? C20 9KX 501 A 1 
HETATM 22 O O2 9KX . . . C 3 12.664 0.789 26.38 1 49.81 ? O2 9KX 501 A 1 
HETATM 23 C C21 9KX . . . C 3 12.282 1.725 27.095 1 46.46 ? C21 9KX 501 A 1 
HETATM 24 C C22 9KX . . . C 3 10.855 2.145 27.227 1 49.8 ? C22 9KX 501 A 1 
HETATM 25 C C23 9KX . . . C 3 9.929 1.211 27.239 1 52.34 ? C23 9KX 501 A 1 
HETATM 26 C C24 9KX . . . C 3 8.523 1.582 27.42 1 54.63 ? C24 9KX 501 A 1 
HETATM 27 C C25 9KX . . . C 3 7.558 0.685 27.209 1 58.42 ? C25 9KX 501 A 1 
HETATM 28 C C26 9KX . . . C 3 6.139 1.14 27.392 1 60.51 ? C26 9KX 501 A 1 
HETATM 29 O O 9KX . . . C 3 14.199 5.152 18.393 1 33.8 ? O 9KX 501 A 1 
HETATM 30 C C 9KX . . . C 3 13.998 8.659 20.791 1 36.58 ? C 9KX 501 A 1 
#
_model_server_stats.io_time_ms              7 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    12 
_model_server_stats.query_time_ms           350 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           30 
#