data_5ZWY # _model_server_result.job_id N70M4vrd3zsgpkHh5jVWVw _model_server_result.datetime_utc '2024-11-16 19:34:46' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5zwy # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"M","auth_seq_id":403}' # _entry.id 5ZWY # _exptl.entry_id 5ZWY _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 7 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5ZWY _cell.length_a 100.253 _cell.length_b 100.253 _cell.length_c 126.771 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5ZWY _symmetry.cell_setting ? _symmetry.Int_Tables_number 169 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 E N N ? 3 F N N ? 3 G N N ? 3 M N N ? 3 N N N ? 3 O N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O ALA 87 A ALA 67 1_555 E NA NA . A NA 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.311 ? metalc ? metalc2 A O GLY 112 A GLY 92 1_555 E NA NA . A NA 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.35 ? metalc ? metalc3 A OE1 GLU 155 A GLU 135 1_555 E NA NA . A NA 403 6_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.923 ? metalc ? metalc4 A OE2 GLU 155 A GLU 135 1_555 E NA NA . A NA 403 6_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.542 ? metalc ? metalc5 D NA NA . A NA 402 1_555 T O HOH . A HOH 520 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.799 ? metalc ? metalc6 E NA NA . A NA 403 1_555 T O HOH . A HOH 520 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.287 ? metalc ? metalc7 E NA NA . A NA 403 1_555 T O HOH . A HOH 558 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.333 ? metalc ? metalc8 B O ALA 87 B ALA 67 1_555 O NA NA . B NA 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.25 ? metalc ? metalc9 B O GLY 112 B GLY 92 1_555 O NA NA . B NA 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.433 ? metalc ? metalc10 B OE1 GLU 155 B GLU 135 1_555 O NA NA . B NA 405 5_554 ? ? ? ? ? ? ? ? ? ? ? ? 2.979 ? metalc ? metalc11 B OE2 GLU 155 B GLU 135 1_555 O NA NA . B NA 405 5_554 ? ? ? ? ? ? ? ? ? ? ? ? 2.45 ? metalc ? metalc12 B O ASP 292 B ASP 272 1_555 M NA NA . B NA 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.425 ? metalc ? metalc13 B O SER 328 B SER 308 1_555 M NA NA . B NA 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.281 ? metalc ? metalc14 B O ARG 331 B ARG 311 1_555 M NA NA . B NA 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.247 ? metalc ? metalc15 B OG SER 337 B SER 317 1_555 M NA NA . B NA 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.944 ? metalc ? metalc16 M NA NA . B NA 403 1_555 U O HOH . B HOH 531 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.463 ? metalc ? metalc17 M NA NA . B NA 403 1_555 U O HOH . B HOH 556 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.446 ? metalc ? metalc18 N NA NA . B NA 404 1_555 U O HOH . B HOH 523 5_554 ? ? ? ? ? ? ? ? ? ? ? ? 2.965 ? metalc ? metalc19 N NA NA . B NA 404 1_555 U O HOH . B HOH 536 5_554 ? ? ? ? ? ? ? ? ? ? ? ? 2.937 ? metalc ? metalc20 O NA NA . B NA 405 1_555 U O HOH . B HOH 536 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.233 ? metalc ? metalc21 O NA NA . B NA 405 1_555 U O HOH . B HOH 591 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.408 ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5ZWY _atom_sites.fract_transf_matrix[1][1] 0.009975 _atom_sites.fract_transf_matrix[1][2] 0.005759 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011518 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007888 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 GOL A 1 401 403 GOL GOL . D 3 NA A 1 402 3 NA NA . E 3 NA A 1 403 4 NA NA . F 3 NA A 1 404 6 NA NA . G 3 NA A 1 405 11 NA NA . H 4 CL A 1 406 1 CL CL . I 4 CL A 1 407 5 CL CL . J 4 CL A 1 408 7 CL CL . K 2 GOL B 1 401 401 GOL GOL . L 2 GOL B 1 402 402 GOL GOL . M 3 NA B 1 403 1 NA NA . N 3 NA B 1 404 2 NA NA . O 3 NA B 1 405 5 NA NA . P 4 CL B 1 406 2 CL CL . Q 4 CL B 1 407 3 CL CL . R 4 CL B 1 408 4 CL CL . S 4 CL B 1 409 6 CL CL . T 5 HOH A 1 501 33 HOH HOH . T 5 HOH A 2 502 74 HOH HOH . T 5 HOH A 3 503 93 HOH HOH . T 5 HOH A 4 504 130 HOH HOH . T 5 HOH A 5 505 55 HOH HOH . T 5 HOH A 6 506 112 HOH HOH . T 5 HOH A 7 507 69 HOH HOH . T 5 HOH A 8 508 187 HOH HOH . T 5 HOH A 9 509 173 HOH HOH . T 5 HOH A 10 510 216 HOH HOH . T 5 HOH A 11 511 175 HOH HOH . T 5 HOH A 12 512 137 HOH HOH . T 5 HOH A 13 513 53 HOH HOH . T 5 HOH A 14 514 87 HOH HOH . T 5 HOH A 15 515 21 HOH HOH . T 5 HOH A 16 516 150 HOH HOH . T 5 HOH A 17 517 85 HOH HOH . T 5 HOH A 18 518 16 HOH HOH . T 5 HOH A 19 519 148 HOH HOH . T 5 HOH A 20 520 184 HOH HOH . T 5 HOH A 21 521 72 HOH HOH . T 5 HOH A 22 522 25 HOH HOH . T 5 HOH A 23 523 91 HOH HOH . T 5 HOH A 24 524 57 HOH HOH . T 5 HOH A 25 525 146 HOH HOH . T 5 HOH A 26 526 83 HOH HOH . T 5 HOH A 27 527 1 HOH HOH . T 5 HOH A 28 528 215 HOH HOH . T 5 HOH A 29 529 31 HOH HOH . T 5 HOH A 30 530 145 HOH HOH . T 5 HOH A 31 531 63 HOH HOH . T 5 HOH A 32 532 26 HOH HOH . T 5 HOH A 33 533 50 HOH HOH . T 5 HOH A 34 534 62 HOH HOH . T 5 HOH A 35 535 15 HOH HOH . T 5 HOH A 36 536 8 HOH HOH . T 5 HOH A 37 537 73 HOH HOH . T 5 HOH A 38 538 44 HOH HOH . T 5 HOH A 39 539 5 HOH HOH . T 5 HOH A 40 540 71 HOH HOH . T 5 HOH A 41 541 96 HOH HOH . T 5 HOH A 42 542 169 HOH HOH . T 5 HOH A 43 543 20 HOH HOH . T 5 HOH A 44 544 203 HOH HOH . T 5 HOH A 45 545 86 HOH HOH . T 5 HOH A 46 546 213 HOH HOH . T 5 HOH A 47 547 208 HOH HOH . T 5 HOH A 48 548 200 HOH HOH . T 5 HOH A 49 549 103 HOH HOH . T 5 HOH A 50 550 84 HOH HOH . T 5 HOH A 51 551 172 HOH HOH . T 5 HOH A 52 552 165 HOH HOH . T 5 HOH A 53 553 29 HOH HOH . T 5 HOH A 54 554 95 HOH HOH . T 5 HOH A 55 555 47 HOH HOH . T 5 HOH A 56 556 102 HOH HOH . T 5 HOH A 57 557 128 HOH HOH . T 5 HOH A 58 558 36 HOH HOH . T 5 HOH A 59 559 30 HOH HOH . T 5 HOH A 60 560 14 HOH HOH . T 5 HOH A 61 561 92 HOH HOH . T 5 HOH A 62 562 79 HOH HOH . T 5 HOH A 63 563 9 HOH HOH . T 5 HOH A 64 564 64 HOH HOH . T 5 HOH A 65 565 41 HOH HOH . T 5 HOH A 66 566 152 HOH HOH . T 5 HOH A 67 567 59 HOH HOH . T 5 HOH A 68 568 6 HOH HOH . T 5 HOH A 69 569 143 HOH HOH . T 5 HOH A 70 570 82 HOH HOH . T 5 HOH A 71 571 67 HOH HOH . T 5 HOH A 72 572 76 HOH HOH . T 5 HOH A 73 573 171 HOH HOH . T 5 HOH A 74 574 42 HOH HOH . T 5 HOH A 75 575 141 HOH HOH . T 5 HOH A 76 576 162 HOH HOH . T 5 HOH A 77 577 164 HOH HOH . T 5 HOH A 78 578 2 HOH HOH . T 5 HOH A 79 579 189 HOH HOH . T 5 HOH A 80 580 163 HOH HOH . T 5 HOH A 81 581 206 HOH HOH . T 5 HOH A 82 582 167 HOH HOH . T 5 HOH A 83 583 205 HOH HOH . T 5 HOH A 84 584 117 HOH HOH . T 5 HOH A 85 585 193 HOH HOH . T 5 HOH A 86 586 202 HOH HOH . T 5 HOH A 87 587 174 HOH HOH . T 5 HOH A 88 588 116 HOH HOH . T 5 HOH A 89 589 214 HOH HOH . T 5 HOH A 90 590 110 HOH HOH . T 5 HOH A 91 591 80 HOH HOH . T 5 HOH A 92 592 168 HOH HOH . T 5 HOH A 93 593 183 HOH HOH . T 5 HOH A 94 594 209 HOH HOH . T 5 HOH A 95 595 111 HOH HOH . T 5 HOH A 96 596 170 HOH HOH . T 5 HOH A 97 597 151 HOH HOH . U 5 HOH B 1 501 46 HOH HOH . U 5 HOH B 2 502 90 HOH HOH . U 5 HOH B 3 503 135 HOH HOH . U 5 HOH B 4 504 153 HOH HOH . U 5 HOH B 5 505 54 HOH HOH . U 5 HOH B 6 506 196 HOH HOH . U 5 HOH B 7 507 51 HOH HOH . U 5 HOH B 8 508 107 HOH HOH . U 5 HOH B 9 509 78 HOH HOH . U 5 HOH B 10 510 99 HOH HOH . U 5 HOH B 11 511 97 HOH HOH . U 5 HOH B 12 512 101 HOH HOH . U 5 HOH B 13 513 179 HOH HOH . U 5 HOH B 14 514 138 HOH HOH . U 5 HOH B 15 515 155 HOH HOH . U 5 HOH B 16 516 124 HOH HOH . U 5 HOH B 17 517 75 HOH HOH . U 5 HOH B 18 518 166 HOH HOH . U 5 HOH B 19 519 182 HOH HOH . U 5 HOH B 20 520 114 HOH HOH . U 5 HOH B 21 521 43 HOH HOH . U 5 HOH B 22 522 105 HOH HOH . U 5 HOH B 23 523 136 HOH HOH . U 5 HOH B 24 524 144 HOH HOH . U 5 HOH B 25 525 10 HOH HOH . U 5 HOH B 26 526 65 HOH HOH . U 5 HOH B 27 527 77 HOH HOH . U 5 HOH B 28 528 147 HOH HOH . U 5 HOH B 29 529 24 HOH HOH . U 5 HOH B 30 530 17 HOH HOH . U 5 HOH B 31 531 39 HOH HOH . U 5 HOH B 32 532 60 HOH HOH . U 5 HOH B 33 533 11 HOH HOH . U 5 HOH B 34 534 127 HOH HOH . U 5 HOH B 35 535 58 HOH HOH . U 5 HOH B 36 536 185 HOH HOH . U 5 HOH B 37 537 159 HOH HOH . U 5 HOH B 38 538 34 HOH HOH . U 5 HOH B 39 539 19 HOH HOH . U 5 HOH B 40 540 35 HOH HOH . U 5 HOH B 41 541 161 HOH HOH . U 5 HOH B 42 542 109 HOH HOH . U 5 HOH B 43 543 28 HOH HOH . U 5 HOH B 44 544 32 HOH HOH . U 5 HOH B 45 545 61 HOH HOH . U 5 HOH B 46 546 66 HOH HOH . U 5 HOH B 47 547 190 HOH HOH . U 5 HOH B 48 548 70 HOH HOH . U 5 HOH B 49 549 22 HOH HOH . U 5 HOH B 50 550 7 HOH HOH . U 5 HOH B 51 551 68 HOH HOH . U 5 HOH B 52 552 81 HOH HOH . U 5 HOH B 53 553 180 HOH HOH . U 5 HOH B 54 554 52 HOH HOH . U 5 HOH B 55 555 27 HOH HOH . U 5 HOH B 56 556 104 HOH HOH . U 5 HOH B 57 557 98 HOH HOH . U 5 HOH B 58 558 129 HOH HOH . U 5 HOH B 59 559 37 HOH HOH . U 5 HOH B 60 560 45 HOH HOH . U 5 HOH B 61 561 198 HOH HOH . U 5 HOH B 62 562 181 HOH HOH . U 5 HOH B 63 563 13 HOH HOH . U 5 HOH B 64 564 139 HOH HOH . U 5 HOH B 65 565 134 HOH HOH . U 5 HOH B 66 566 160 HOH HOH . U 5 HOH B 67 567 140 HOH HOH . U 5 HOH B 68 568 158 HOH HOH . U 5 HOH B 69 569 88 HOH HOH . U 5 HOH B 70 570 133 HOH HOH . U 5 HOH B 71 571 191 HOH HOH . U 5 HOH B 72 572 113 HOH HOH . U 5 HOH B 73 573 100 HOH HOH . U 5 HOH B 74 574 23 HOH HOH . U 5 HOH B 75 575 38 HOH HOH . U 5 HOH B 76 576 120 HOH HOH . U 5 HOH B 77 577 40 HOH HOH . U 5 HOH B 78 578 4 HOH HOH . U 5 HOH B 79 579 197 HOH HOH . U 5 HOH B 80 580 188 HOH HOH . U 5 HOH B 81 581 94 HOH HOH . U 5 HOH B 82 582 212 HOH HOH . U 5 HOH B 83 583 3 HOH HOH . U 5 HOH B 84 584 157 HOH HOH . U 5 HOH B 85 585 18 HOH HOH . U 5 HOH B 86 586 126 HOH HOH . U 5 HOH B 87 587 207 HOH HOH . U 5 HOH B 88 588 48 HOH HOH . U 5 HOH B 89 589 12 HOH HOH . U 5 HOH B 90 590 211 HOH HOH . U 5 HOH B 91 591 186 HOH HOH . U 5 HOH B 92 592 156 HOH HOH . U 5 HOH B 93 593 201 HOH HOH . U 5 HOH B 94 594 108 HOH HOH . U 5 HOH B 95 595 131 HOH HOH . U 5 HOH B 96 596 56 HOH HOH . U 5 HOH B 97 597 142 HOH HOH . U 5 HOH B 98 598 195 HOH HOH . U 5 HOH B 99 599 210 HOH HOH . U 5 HOH B 100 600 89 HOH HOH . U 5 HOH B 101 601 119 HOH HOH . U 5 HOH B 102 602 178 HOH HOH . U 5 HOH B 103 603 204 HOH HOH . U 5 HOH B 104 604 177 HOH HOH . U 5 HOH B 105 605 106 HOH HOH . U 5 HOH B 106 606 115 HOH HOH . U 5 HOH B 107 607 176 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id M _atom_site.label_entity_id 3 _atom_site.Cartn_x 3.422 _atom_site.Cartn_y 36.161 _atom_site.Cartn_z -12.354 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 24.93 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 403 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 17 _model_server_stats.create_model_time_ms 26 _model_server_stats.query_time_ms 328 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 1 #