data_5ZX8 # _model_server_result.job_id JaCm7ZH3TYBkfeBTCyEoQg _model_server_result.datetime_utc '2024-12-26 15:39:36' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5zx8 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":202}' # _entry.id 5ZX8 # _exptl.entry_id 5ZX8 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 189.1 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CITRATE ANION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5ZX8 _cell.length_a 47.453 _cell.length_b 53.918 _cell.length_c 58.67 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5ZX8 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N # _struct_conn.conn_type_id disulf _struct_conn.details ? _struct_conn.id disulf1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 166 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 162 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id A _struct_conn.ptnr2_label_atom_id SG _struct_conn.ptnr2_label_comp_id CYS _struct_conn.ptnr2_label_seq_id 175 _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id CYS _struct_conn.ptnr2_auth_seq_id 171 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.055 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C6 H5 O7 -3' _chem_comp.formula_weight 189.1 _chem_comp.id FLC _chem_comp.mon_nstd_flag . _chem_comp.name 'CITRATE ANION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CAC CA FLC sing 83 n n CAC OA1 FLC doub 84 n n CAC OA2 FLC sing 85 n n CA CB FLC sing 86 n n CA HA1 FLC sing 87 n n CA HA2 FLC sing 88 n n CB CBC FLC sing 89 n n CB CG FLC sing 90 n n CB OHB FLC sing 91 n n CBC OB1 FLC doub 92 n n CBC OB2 FLC sing 93 n n CG CGC FLC sing 94 n n CG HG1 FLC sing 95 n n CG HG2 FLC sing 96 n n CGC OG1 FLC doub 97 n n CGC OG2 FLC sing 98 n n OHB HOB FLC sing 99 n n # _atom_sites.entry_id 5ZX8 _atom_sites.fract_transf_matrix[1][1] 0.021073 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018547 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.017044 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 FLC A 1 201 183 FLC FLC . C 2 FLC A 1 202 184 FLC FLC . D 3 MPD A 1 203 185 MPD MPD . E 3 MPD A 1 204 186 MPD MPD . F 4 HOH A 1 301 51 HOH HOH . F 4 HOH A 2 302 36 HOH HOH . F 4 HOH A 3 303 57 HOH HOH . F 4 HOH A 4 304 69 HOH HOH . F 4 HOH A 5 305 76 HOH HOH . F 4 HOH A 6 306 41 HOH HOH . F 4 HOH A 7 307 85 HOH HOH . F 4 HOH A 8 308 19 HOH HOH . F 4 HOH A 9 309 105 HOH HOH . F 4 HOH A 10 310 23 HOH HOH . F 4 HOH A 11 311 70 HOH HOH . F 4 HOH A 12 312 98 HOH HOH . F 4 HOH A 13 313 63 HOH HOH . F 4 HOH A 14 314 8 HOH HOH . F 4 HOH A 15 315 111 HOH HOH . F 4 HOH A 16 316 50 HOH HOH . F 4 HOH A 17 317 21 HOH HOH . F 4 HOH A 18 318 93 HOH HOH . F 4 HOH A 19 319 7 HOH HOH . F 4 HOH A 20 320 42 HOH HOH . F 4 HOH A 21 321 74 HOH HOH . F 4 HOH A 22 322 25 HOH HOH . F 4 HOH A 23 323 80 HOH HOH . F 4 HOH A 24 324 45 HOH HOH . F 4 HOH A 25 325 120 HOH HOH . F 4 HOH A 26 326 26 HOH HOH . F 4 HOH A 27 327 37 HOH HOH . F 4 HOH A 28 328 15 HOH HOH . F 4 HOH A 29 329 13 HOH HOH . F 4 HOH A 30 330 47 HOH HOH . F 4 HOH A 31 331 4 HOH HOH . F 4 HOH A 32 332 16 HOH HOH . F 4 HOH A 33 333 114 HOH HOH . F 4 HOH A 34 334 60 HOH HOH . F 4 HOH A 35 335 90 HOH HOH . F 4 HOH A 36 336 46 HOH HOH . F 4 HOH A 37 337 107 HOH HOH . F 4 HOH A 38 338 34 HOH HOH . F 4 HOH A 39 339 44 HOH HOH . F 4 HOH A 40 340 101 HOH HOH . F 4 HOH A 41 341 3 HOH HOH . F 4 HOH A 42 342 68 HOH HOH . F 4 HOH A 43 343 12 HOH HOH . F 4 HOH A 44 344 33 HOH HOH . F 4 HOH A 45 345 84 HOH HOH . F 4 HOH A 46 346 72 HOH HOH . F 4 HOH A 47 347 94 HOH HOH . F 4 HOH A 48 348 53 HOH HOH . F 4 HOH A 49 349 1 HOH HOH . F 4 HOH A 50 350 6 HOH HOH . F 4 HOH A 51 351 62 HOH HOH . F 4 HOH A 52 352 61 HOH HOH . F 4 HOH A 53 353 39 HOH HOH . F 4 HOH A 54 354 64 HOH HOH . F 4 HOH A 55 355 49 HOH HOH . F 4 HOH A 56 356 14 HOH HOH . F 4 HOH A 57 357 9 HOH HOH . F 4 HOH A 58 358 28 HOH HOH . F 4 HOH A 59 359 17 HOH HOH . F 4 HOH A 60 360 5 HOH HOH . F 4 HOH A 61 361 59 HOH HOH . F 4 HOH A 62 362 67 HOH HOH . F 4 HOH A 63 363 55 HOH HOH . F 4 HOH A 64 364 27 HOH HOH . F 4 HOH A 65 365 32 HOH HOH . F 4 HOH A 66 366 109 HOH HOH . F 4 HOH A 67 367 48 HOH HOH . F 4 HOH A 68 368 103 HOH HOH . F 4 HOH A 69 369 87 HOH HOH . F 4 HOH A 70 370 119 HOH HOH . F 4 HOH A 71 371 115 HOH HOH . F 4 HOH A 72 372 10 HOH HOH . F 4 HOH A 73 373 77 HOH HOH . F 4 HOH A 74 374 52 HOH HOH . F 4 HOH A 75 375 38 HOH HOH . F 4 HOH A 76 376 82 HOH HOH . F 4 HOH A 77 377 65 HOH HOH . F 4 HOH A 78 378 20 HOH HOH . F 4 HOH A 79 379 78 HOH HOH . F 4 HOH A 80 380 22 HOH HOH . F 4 HOH A 81 381 81 HOH HOH . F 4 HOH A 82 382 56 HOH HOH . F 4 HOH A 83 383 24 HOH HOH . F 4 HOH A 84 384 71 HOH HOH . F 4 HOH A 85 385 40 HOH HOH . F 4 HOH A 86 386 73 HOH HOH . F 4 HOH A 87 387 110 HOH HOH . F 4 HOH A 88 388 58 HOH HOH . F 4 HOH A 89 389 2 HOH HOH . F 4 HOH A 90 390 96 HOH HOH . F 4 HOH A 91 391 104 HOH HOH . F 4 HOH A 92 392 66 HOH HOH . F 4 HOH A 93 393 89 HOH HOH . F 4 HOH A 94 394 108 HOH HOH . F 4 HOH A 95 395 99 HOH HOH . F 4 HOH A 96 396 31 HOH HOH . F 4 HOH A 97 397 112 HOH HOH . F 4 HOH A 98 398 18 HOH HOH . F 4 HOH A 99 399 97 HOH HOH . F 4 HOH A 100 400 118 HOH HOH . F 4 HOH A 101 401 117 HOH HOH . F 4 HOH A 102 402 79 HOH HOH . F 4 HOH A 103 403 92 HOH HOH . F 4 HOH A 104 404 11 HOH HOH . F 4 HOH A 105 405 54 HOH HOH . F 4 HOH A 106 406 75 HOH HOH . F 4 HOH A 107 407 95 HOH HOH . F 4 HOH A 108 408 29 HOH HOH . F 4 HOH A 109 409 113 HOH HOH . F 4 HOH A 110 410 88 HOH HOH . F 4 HOH A 111 411 102 HOH HOH . F 4 HOH A 112 412 30 HOH HOH . F 4 HOH A 113 413 35 HOH HOH . F 4 HOH A 114 414 91 HOH HOH . F 4 HOH A 115 415 116 HOH HOH . F 4 HOH A 116 416 43 HOH HOH . F 4 HOH A 117 417 83 HOH HOH . F 4 HOH A 118 418 100 HOH HOH . F 4 HOH A 119 419 86 HOH HOH . F 4 HOH A 120 420 106 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CAC FLC . . . C 2 2.892 32.005 2.347 1 19.97 ? CAC FLC 202 A 1 HETATM 2 C CA FLC . . . C 2 4.023 33.005 2.404 1 19.64 ? CA FLC 202 A 1 HETATM 3 C CB FLC . . . C 2 3.79 33.87 3.596 1 20.16 ? CB FLC 202 A 1 HETATM 4 C CBC FLC . . . C 2 4.182 33.192 4.816 1 20.79 ? CBC FLC 202 A 1 HETATM 5 C CG FLC . . . C 2 2.613 34.737 3.709 1 22.05 ? CG FLC 202 A 1 HETATM 6 C CGC FLC . . . C 2 2.3 35.505 2.426 1 21.37 ? CGC FLC 202 A 1 HETATM 7 O OA1 FLC . . . C 2 3.042 30.847 2.824 1 25.57 ? OA1 FLC 202 A 1 HETATM 8 O OA2 FLC . . . C 2 1.79 32.34 1.833 1 24.11 ? OA2 FLC 202 A 1 HETATM 9 O OB1 FLC . . . C 2 5.347 33.079 5.202 1 21.23 ? OB1 FLC 202 A 1 HETATM 10 O OB2 FLC . . . C 2 3.306 32.547 5.429 1 26.21 ? OB2 FLC 202 A 1 HETATM 11 O OG1 FLC . . . C 2 1.857 34.85 1.426 1 21.22 ? OG1 FLC 202 A 1 HETATM 12 O OG2 FLC . . . C 2 2.466 36.755 2.349 1 25.88 ? OG2 FLC 202 A 1 HETATM 13 O OHB FLC . . . C 2 4.83 34.892 3.389 1 23.25 ? OHB FLC 202 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 294 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 13 #