data_5ZX8
#
_model_server_result.job_id            4y4ANlJuykCXkve4jpq1Zw 
_model_server_result.datetime_utc      '2024-10-19 16:43:18' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5zx8 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":204}' 
#
_entry.id    5ZX8 
#
_exptl.entry_id    5ZX8 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              118.174 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            (4S)-2-METHYL-2,4-PENTANEDIOL 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5ZX8 
_cell.length_a            47.453 
_cell.length_b            53.918 
_cell.length_c            58.67 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5ZX8 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 D N N 
? 3 E N N 
#
_struct_conn.conn_type_id                   disulf 
_struct_conn.details                        ? 
_struct_conn.id                             disulf1 
_struct_conn.ptnr1_label_asym_id            A 
_struct_conn.ptnr1_label_atom_id            SG 
_struct_conn.ptnr1_label_comp_id            CYS 
_struct_conn.ptnr1_label_seq_id             166 
_struct_conn.ptnr1_auth_asym_id             A 
_struct_conn.ptnr1_auth_comp_id             CYS 
_struct_conn.ptnr1_auth_seq_id              162 
_struct_conn.ptnr1_symmetry                 1_555 
_struct_conn.ptnr2_label_asym_id            A 
_struct_conn.ptnr2_label_atom_id            SG 
_struct_conn.ptnr2_label_comp_id            CYS 
_struct_conn.ptnr2_label_seq_id             175 
_struct_conn.ptnr2_auth_asym_id             A 
_struct_conn.ptnr2_auth_comp_id             CYS 
_struct_conn.ptnr2_auth_seq_id              171 
_struct_conn.ptnr2_symmetry                 1_555 
_struct_conn.pdbx_ptnr1_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr1_label_alt_id        ? 
_struct_conn.pdbx_ptnr1_standard_comp_id    ? 
_struct_conn.pdbx_ptnr2_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr2_label_alt_id        ? 
_struct_conn.pdbx_ptnr3_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr3_label_alt_id        ? 
_struct_conn.pdbx_ptnr3_label_asym_id       ? 
_struct_conn.pdbx_ptnr3_label_atom_id       ? 
_struct_conn.pdbx_ptnr3_label_comp_id       ? 
_struct_conn.pdbx_ptnr3_label_seq_id        ? 
_struct_conn.pdbx_PDB_id                    ? 
_struct_conn.pdbx_dist_value                2.055 
_struct_conn.pdbx_value_order               ? 
#
_chem_comp.formula           'C6 H14 O2' 
_chem_comp.formula_weight    118.174 
_chem_comp.id                MPD 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              (4S)-2-METHYL-2,4-PENTANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 MPD sing 254 n n 
C1 H11 MPD sing 255 n n 
C1 H12 MPD sing 256 n n 
C1 H13 MPD sing 257 n n 
C2 O2 MPD sing 258 n n 
C2 CM MPD sing 259 n n 
C2 C3 MPD sing 260 n n 
O2 HO2 MPD sing 261 n n 
CM HM1 MPD sing 262 n n 
CM HM2 MPD sing 263 n n 
CM HM3 MPD sing 264 n n 
C3 C4 MPD sing 265 n n 
C3 H31 MPD sing 266 n n 
C3 H32 MPD sing 267 n n 
C4 O4 MPD sing 268 n n 
C4 C5 MPD sing 269 n n 
C4 H4 MPD sing 270 n n 
O4 HO4 MPD sing 271 n n 
C5 H51 MPD sing 272 n n 
C5 H52 MPD sing 273 n n 
C5 H53 MPD sing 274 n n 
#
_atom_sites.entry_id                     5ZX8 
_atom_sites.fract_transf_matrix[1][1]    0.021073 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.018547 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.017044 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 FLC A 1 201 183 FLC FLC . 
C 2 FLC A 1 202 184 FLC FLC . 
D 3 MPD A 1 203 185 MPD MPD . 
E 3 MPD A 1 204 186 MPD MPD . 
F 4 HOH A 1 301 51 HOH HOH . 
F 4 HOH A 2 302 36 HOH HOH . 
F 4 HOH A 3 303 57 HOH HOH . 
F 4 HOH A 4 304 69 HOH HOH . 
F 4 HOH A 5 305 76 HOH HOH . 
F 4 HOH A 6 306 41 HOH HOH . 
F 4 HOH A 7 307 85 HOH HOH . 
F 4 HOH A 8 308 19 HOH HOH . 
F 4 HOH A 9 309 105 HOH HOH . 
F 4 HOH A 10 310 23 HOH HOH . 
F 4 HOH A 11 311 70 HOH HOH . 
F 4 HOH A 12 312 98 HOH HOH . 
F 4 HOH A 13 313 63 HOH HOH . 
F 4 HOH A 14 314 8 HOH HOH . 
F 4 HOH A 15 315 111 HOH HOH . 
F 4 HOH A 16 316 50 HOH HOH . 
F 4 HOH A 17 317 21 HOH HOH . 
F 4 HOH A 18 318 93 HOH HOH . 
F 4 HOH A 19 319 7 HOH HOH . 
F 4 HOH A 20 320 42 HOH HOH . 
F 4 HOH A 21 321 74 HOH HOH . 
F 4 HOH A 22 322 25 HOH HOH . 
F 4 HOH A 23 323 80 HOH HOH . 
F 4 HOH A 24 324 45 HOH HOH . 
F 4 HOH A 25 325 120 HOH HOH . 
F 4 HOH A 26 326 26 HOH HOH . 
F 4 HOH A 27 327 37 HOH HOH . 
F 4 HOH A 28 328 15 HOH HOH . 
F 4 HOH A 29 329 13 HOH HOH . 
F 4 HOH A 30 330 47 HOH HOH . 
F 4 HOH A 31 331 4 HOH HOH . 
F 4 HOH A 32 332 16 HOH HOH . 
F 4 HOH A 33 333 114 HOH HOH . 
F 4 HOH A 34 334 60 HOH HOH . 
F 4 HOH A 35 335 90 HOH HOH . 
F 4 HOH A 36 336 46 HOH HOH . 
F 4 HOH A 37 337 107 HOH HOH . 
F 4 HOH A 38 338 34 HOH HOH . 
F 4 HOH A 39 339 44 HOH HOH . 
F 4 HOH A 40 340 101 HOH HOH . 
F 4 HOH A 41 341 3 HOH HOH . 
F 4 HOH A 42 342 68 HOH HOH . 
F 4 HOH A 43 343 12 HOH HOH . 
F 4 HOH A 44 344 33 HOH HOH . 
F 4 HOH A 45 345 84 HOH HOH . 
F 4 HOH A 46 346 72 HOH HOH . 
F 4 HOH A 47 347 94 HOH HOH . 
F 4 HOH A 48 348 53 HOH HOH . 
F 4 HOH A 49 349 1 HOH HOH . 
F 4 HOH A 50 350 6 HOH HOH . 
F 4 HOH A 51 351 62 HOH HOH . 
F 4 HOH A 52 352 61 HOH HOH . 
F 4 HOH A 53 353 39 HOH HOH . 
F 4 HOH A 54 354 64 HOH HOH . 
F 4 HOH A 55 355 49 HOH HOH . 
F 4 HOH A 56 356 14 HOH HOH . 
F 4 HOH A 57 357 9 HOH HOH . 
F 4 HOH A 58 358 28 HOH HOH . 
F 4 HOH A 59 359 17 HOH HOH . 
F 4 HOH A 60 360 5 HOH HOH . 
F 4 HOH A 61 361 59 HOH HOH . 
F 4 HOH A 62 362 67 HOH HOH . 
F 4 HOH A 63 363 55 HOH HOH . 
F 4 HOH A 64 364 27 HOH HOH . 
F 4 HOH A 65 365 32 HOH HOH . 
F 4 HOH A 66 366 109 HOH HOH . 
F 4 HOH A 67 367 48 HOH HOH . 
F 4 HOH A 68 368 103 HOH HOH . 
F 4 HOH A 69 369 87 HOH HOH . 
F 4 HOH A 70 370 119 HOH HOH . 
F 4 HOH A 71 371 115 HOH HOH . 
F 4 HOH A 72 372 10 HOH HOH . 
F 4 HOH A 73 373 77 HOH HOH . 
F 4 HOH A 74 374 52 HOH HOH . 
F 4 HOH A 75 375 38 HOH HOH . 
F 4 HOH A 76 376 82 HOH HOH . 
F 4 HOH A 77 377 65 HOH HOH . 
F 4 HOH A 78 378 20 HOH HOH . 
F 4 HOH A 79 379 78 HOH HOH . 
F 4 HOH A 80 380 22 HOH HOH . 
F 4 HOH A 81 381 81 HOH HOH . 
F 4 HOH A 82 382 56 HOH HOH . 
F 4 HOH A 83 383 24 HOH HOH . 
F 4 HOH A 84 384 71 HOH HOH . 
F 4 HOH A 85 385 40 HOH HOH . 
F 4 HOH A 86 386 73 HOH HOH . 
F 4 HOH A 87 387 110 HOH HOH . 
F 4 HOH A 88 388 58 HOH HOH . 
F 4 HOH A 89 389 2 HOH HOH . 
F 4 HOH A 90 390 96 HOH HOH . 
F 4 HOH A 91 391 104 HOH HOH . 
F 4 HOH A 92 392 66 HOH HOH . 
F 4 HOH A 93 393 89 HOH HOH . 
F 4 HOH A 94 394 108 HOH HOH . 
F 4 HOH A 95 395 99 HOH HOH . 
F 4 HOH A 96 396 31 HOH HOH . 
F 4 HOH A 97 397 112 HOH HOH . 
F 4 HOH A 98 398 18 HOH HOH . 
F 4 HOH A 99 399 97 HOH HOH . 
F 4 HOH A 100 400 118 HOH HOH . 
F 4 HOH A 101 401 117 HOH HOH . 
F 4 HOH A 102 402 79 HOH HOH . 
F 4 HOH A 103 403 92 HOH HOH . 
F 4 HOH A 104 404 11 HOH HOH . 
F 4 HOH A 105 405 54 HOH HOH . 
F 4 HOH A 106 406 75 HOH HOH . 
F 4 HOH A 107 407 95 HOH HOH . 
F 4 HOH A 108 408 29 HOH HOH . 
F 4 HOH A 109 409 113 HOH HOH . 
F 4 HOH A 110 410 88 HOH HOH . 
F 4 HOH A 111 411 102 HOH HOH . 
F 4 HOH A 112 412 30 HOH HOH . 
F 4 HOH A 113 413 35 HOH HOH . 
F 4 HOH A 114 414 91 HOH HOH . 
F 4 HOH A 115 415 116 HOH HOH . 
F 4 HOH A 116 416 43 HOH HOH . 
F 4 HOH A 117 417 83 HOH HOH . 
F 4 HOH A 118 418 100 HOH HOH . 
F 4 HOH A 119 419 86 HOH HOH . 
F 4 HOH A 120 420 106 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 MPD . . . E 3 40.776 35.512 -3.508 1 26.73 ? C1 MPD 204 A 1 
HETATM 2 C C2 MPD . . . E 3 41.767 35.257 -2.37 1 23.38 ? C2 MPD 204 A 1 
HETATM 3 O O2 MPD . . . E 3 41.849 36.477 -1.677 1 24.39 ? O2 MPD 204 A 1 
HETATM 4 C CM MPD . . . E 3 41.297 34.151 -1.449 1 28.81 ? CM MPD 204 A 1 
HETATM 5 C C3 MPD . . . E 3 43.21 34.914 -2.812 1 24.94 ? C3 MPD 204 A 1 
HETATM 6 C C4 MPD . . . E 3 44.105 36.122 -3.171 1 23.9 ? C4 MPD 204 A 1 
HETATM 7 O O4 MPD . . . E 3 45.534 35.837 -3.183 1 33.6 ? O4 MPD 204 A 1 
HETATM 8 C C5 MPD . . . E 3 43.739 36.573 -4.525 1 19.16 ? C5 MPD 204 A 1 
#
_model_server_stats.io_time_ms              61 
_model_server_stats.parse_time_ms           81 
_model_server_stats.create_model_time_ms    19 
_model_server_stats.query_time_ms           285 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           8 
#