data_5ZX9 # _model_server_result.job_id exmCc_LDiL2oZ4hj8ghD6A _model_server_result.datetime_utc '2025-08-14 15:29:07' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5zx9 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 5ZX9 # _exptl.entry_id 5ZX9 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5ZX9 _cell.length_a 118.666 _cell.length_b 118.666 _cell.length_c 117.894 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5ZX9 _symmetry.cell_setting ? _symmetry.Int_Tables_number 155 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'H 3 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4,5,6 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -y,x-y,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 0 0 0 3 'crystal symmetry operation' 3_555 -x+y,-x,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 0 0 0 4 'crystal symmetry operation' 4_556 y,x,-z+1 -0.5 0.866025 0 0.866025 0.5 0 0 0 -1 0 0 117.894 5 'crystal symmetry operation' 5_556 x-y,-y,-z+1 1 0 0 0 -1 0 0 0 -1 0 0 117.894 6 'crystal symmetry operation' 6_556 -x,-x+y,-z+1 -0.5 -0.866025 0 -0.866025 0.5 0 0 0 -1 0 0 117.894 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 116 n n C1 C2 GOL sing 117 n n C1 H11 GOL sing 118 n n C1 H12 GOL sing 119 n n O1 HO1 GOL sing 120 n n C2 O2 GOL sing 121 n n C2 C3 GOL sing 122 n n C2 H2 GOL sing 123 n n O2 HO2 GOL sing 124 n n C3 O3 GOL sing 125 n n C3 H31 GOL sing 126 n n C3 H32 GOL sing 127 n n O3 HO3 GOL sing 128 n n # _atom_sites.entry_id 5ZX9 _atom_sites.fract_transf_matrix[1][1] 0.008427 _atom_sites.fract_transf_matrix[1][2] 0.004865 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009731 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008482 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GOL A 1 401 571 GOL GOL . C 3 HOH A 1 501 257 HOH HOH . C 3 HOH A 2 502 266 HOH HOH . C 3 HOH A 3 503 80 HOH HOH . C 3 HOH A 4 504 123 HOH HOH . C 3 HOH A 5 505 194 HOH HOH . C 3 HOH A 6 506 259 HOH HOH . C 3 HOH A 7 507 130 HOH HOH . C 3 HOH A 8 508 145 HOH HOH . C 3 HOH A 9 509 198 HOH HOH . C 3 HOH A 10 510 14 HOH HOH . C 3 HOH A 11 511 167 HOH HOH . C 3 HOH A 12 512 21 HOH HOH . C 3 HOH A 13 513 32 HOH HOH . C 3 HOH A 14 514 56 HOH HOH . C 3 HOH A 15 515 155 HOH HOH . C 3 HOH A 16 516 8 HOH HOH . C 3 HOH A 17 517 27 HOH HOH . C 3 HOH A 18 518 140 HOH HOH . C 3 HOH A 19 519 184 HOH HOH . C 3 HOH A 20 520 26 HOH HOH . C 3 HOH A 21 521 215 HOH HOH . C 3 HOH A 22 522 151 HOH HOH . C 3 HOH A 23 523 86 HOH HOH . C 3 HOH A 24 524 28 HOH HOH . C 3 HOH A 25 525 174 HOH HOH . C 3 HOH A 26 526 120 HOH HOH . C 3 HOH A 27 527 35 HOH HOH . C 3 HOH A 28 528 71 HOH HOH . C 3 HOH A 29 529 59 HOH HOH . C 3 HOH A 30 530 36 HOH HOH . C 3 HOH A 31 531 52 HOH HOH . C 3 HOH A 32 532 54 HOH HOH . C 3 HOH A 33 533 61 HOH HOH . C 3 HOH A 34 534 260 HOH HOH . C 3 HOH A 35 535 22 HOH HOH . C 3 HOH A 36 536 96 HOH HOH . C 3 HOH A 37 537 152 HOH HOH . C 3 HOH A 38 538 93 HOH HOH . C 3 HOH A 39 539 168 HOH HOH . C 3 HOH A 40 540 204 HOH HOH . C 3 HOH A 41 541 38 HOH HOH . C 3 HOH A 42 542 131 HOH HOH . C 3 HOH A 43 543 74 HOH HOH . C 3 HOH A 44 544 44 HOH HOH . C 3 HOH A 45 545 50 HOH HOH . C 3 HOH A 46 546 115 HOH HOH . C 3 HOH A 47 547 159 HOH HOH . C 3 HOH A 48 548 45 HOH HOH . C 3 HOH A 49 549 187 HOH HOH . C 3 HOH A 50 550 40 HOH HOH . C 3 HOH A 51 551 51 HOH HOH . C 3 HOH A 52 552 9 HOH HOH . C 3 HOH A 53 553 12 HOH HOH . C 3 HOH A 54 554 139 HOH HOH . C 3 HOH A 55 555 254 HOH HOH . C 3 HOH A 56 556 11 HOH HOH . C 3 HOH A 57 557 77 HOH HOH . C 3 HOH A 58 558 117 HOH HOH . C 3 HOH A 59 559 107 HOH HOH . C 3 HOH A 60 560 24 HOH HOH . C 3 HOH A 61 561 55 HOH HOH . C 3 HOH A 62 562 18 HOH HOH . C 3 HOH A 63 563 23 HOH HOH . C 3 HOH A 64 564 13 HOH HOH . C 3 HOH A 65 565 1 HOH HOH . C 3 HOH A 66 566 241 HOH HOH . C 3 HOH A 67 567 136 HOH HOH . C 3 HOH A 68 568 104 HOH HOH . C 3 HOH A 69 569 81 HOH HOH . C 3 HOH A 70 570 68 HOH HOH . C 3 HOH A 71 571 245 HOH HOH . C 3 HOH A 72 572 60 HOH HOH . C 3 HOH A 73 573 233 HOH HOH . C 3 HOH A 74 574 64 HOH HOH . C 3 HOH A 75 575 88 HOH HOH . C 3 HOH A 76 576 49 HOH HOH . C 3 HOH A 77 577 31 HOH HOH . C 3 HOH A 78 578 223 HOH HOH . C 3 HOH A 79 579 67 HOH HOH . C 3 HOH A 80 580 3 HOH HOH . C 3 HOH A 81 581 39 HOH HOH . C 3 HOH A 82 582 83 HOH HOH . C 3 HOH A 83 583 89 HOH HOH . C 3 HOH A 84 584 135 HOH HOH . C 3 HOH A 85 585 46 HOH HOH . C 3 HOH A 86 586 66 HOH HOH . C 3 HOH A 87 587 207 HOH HOH . C 3 HOH A 88 588 70 HOH HOH . C 3 HOH A 89 589 91 HOH HOH . C 3 HOH A 90 590 114 HOH HOH . C 3 HOH A 91 591 30 HOH HOH . C 3 HOH A 92 592 79 HOH HOH . C 3 HOH A 93 593 126 HOH HOH . C 3 HOH A 94 594 113 HOH HOH . C 3 HOH A 95 595 17 HOH HOH . C 3 HOH A 96 596 58 HOH HOH . C 3 HOH A 97 597 110 HOH HOH . C 3 HOH A 98 598 229 HOH HOH . C 3 HOH A 99 599 57 HOH HOH . C 3 HOH A 100 600 2 HOH HOH . C 3 HOH A 101 601 116 HOH HOH . C 3 HOH A 102 602 144 HOH HOH . C 3 HOH A 103 603 34 HOH HOH . C 3 HOH A 104 604 63 HOH HOH . C 3 HOH A 105 605 43 HOH HOH . C 3 HOH A 106 606 181 HOH HOH . C 3 HOH A 107 607 19 HOH HOH . C 3 HOH A 108 608 164 HOH HOH . C 3 HOH A 109 609 258 HOH HOH . C 3 HOH A 110 610 122 HOH HOH . C 3 HOH A 111 611 220 HOH HOH . C 3 HOH A 112 612 6 HOH HOH . C 3 HOH A 113 613 76 HOH HOH . C 3 HOH A 114 614 161 HOH HOH . C 3 HOH A 115 615 255 HOH HOH . C 3 HOH A 116 616 237 HOH HOH . C 3 HOH A 117 617 111 HOH HOH . C 3 HOH A 118 618 5 HOH HOH . C 3 HOH A 119 619 141 HOH HOH . C 3 HOH A 120 620 102 HOH HOH . C 3 HOH A 121 621 193 HOH HOH . C 3 HOH A 122 622 173 HOH HOH . C 3 HOH A 123 623 48 HOH HOH . C 3 HOH A 124 624 47 HOH HOH . C 3 HOH A 125 625 20 HOH HOH . C 3 HOH A 126 626 137 HOH HOH . C 3 HOH A 127 627 97 HOH HOH . C 3 HOH A 128 628 170 HOH HOH . C 3 HOH A 129 629 240 HOH HOH . C 3 HOH A 130 630 178 HOH HOH . C 3 HOH A 131 631 166 HOH HOH . C 3 HOH A 132 632 94 HOH HOH . C 3 HOH A 133 633 37 HOH HOH . C 3 HOH A 134 634 171 HOH HOH . C 3 HOH A 135 635 90 HOH HOH . C 3 HOH A 136 636 189 HOH HOH . C 3 HOH A 137 637 78 HOH HOH . C 3 HOH A 138 638 73 HOH HOH . C 3 HOH A 139 639 183 HOH HOH . C 3 HOH A 140 640 53 HOH HOH . C 3 HOH A 141 641 196 HOH HOH . C 3 HOH A 142 642 205 HOH HOH . C 3 HOH A 143 643 133 HOH HOH . C 3 HOH A 144 644 128 HOH HOH . C 3 HOH A 145 645 10 HOH HOH . C 3 HOH A 146 646 69 HOH HOH . C 3 HOH A 147 647 222 HOH HOH . C 3 HOH A 148 648 263 HOH HOH . C 3 HOH A 149 649 103 HOH HOH . C 3 HOH A 150 650 192 HOH HOH . C 3 HOH A 151 651 200 HOH HOH . C 3 HOH A 152 652 247 HOH HOH . C 3 HOH A 153 653 25 HOH HOH . C 3 HOH A 154 654 129 HOH HOH . C 3 HOH A 155 655 243 HOH HOH . C 3 HOH A 156 656 108 HOH HOH . C 3 HOH A 157 657 234 HOH HOH . C 3 HOH A 158 658 65 HOH HOH . C 3 HOH A 159 659 62 HOH HOH . C 3 HOH A 160 660 15 HOH HOH . C 3 HOH A 161 661 156 HOH HOH . C 3 HOH A 162 662 134 HOH HOH . C 3 HOH A 163 663 100 HOH HOH . C 3 HOH A 164 664 191 HOH HOH . C 3 HOH A 165 665 87 HOH HOH . C 3 HOH A 166 666 214 HOH HOH . C 3 HOH A 167 667 160 HOH HOH . C 3 HOH A 168 668 138 HOH HOH . C 3 HOH A 169 669 105 HOH HOH . C 3 HOH A 170 670 256 HOH HOH . C 3 HOH A 171 671 227 HOH HOH . C 3 HOH A 172 672 262 HOH HOH . C 3 HOH A 173 673 175 HOH HOH . C 3 HOH A 174 674 238 HOH HOH . C 3 HOH A 175 675 127 HOH HOH . C 3 HOH A 176 676 218 HOH HOH . C 3 HOH A 177 677 195 HOH HOH . C 3 HOH A 178 678 217 HOH HOH . C 3 HOH A 179 679 190 HOH HOH . C 3 HOH A 180 680 235 HOH HOH . C 3 HOH A 181 681 211 HOH HOH . C 3 HOH A 182 682 118 HOH HOH . C 3 HOH A 183 683 232 HOH HOH . C 3 HOH A 184 684 216 HOH HOH . C 3 HOH A 185 685 252 HOH HOH . C 3 HOH A 186 686 239 HOH HOH . C 3 HOH A 187 687 142 HOH HOH . C 3 HOH A 188 688 202 HOH HOH . C 3 HOH A 189 689 82 HOH HOH . C 3 HOH A 190 690 150 HOH HOH . C 3 HOH A 191 691 199 HOH HOH . C 3 HOH A 192 692 109 HOH HOH . C 3 HOH A 193 693 84 HOH HOH . C 3 HOH A 194 694 95 HOH HOH . C 3 HOH A 195 695 230 HOH HOH . C 3 HOH A 196 696 179 HOH HOH . C 3 HOH A 197 697 226 HOH HOH . C 3 HOH A 198 698 176 HOH HOH . C 3 HOH A 199 699 112 HOH HOH . C 3 HOH A 200 700 106 HOH HOH . C 3 HOH A 201 701 121 HOH HOH . C 3 HOH A 202 702 248 HOH HOH . C 3 HOH A 203 703 29 HOH HOH . C 3 HOH A 204 704 197 HOH HOH . C 3 HOH A 205 705 143 HOH HOH . C 3 HOH A 206 706 221 HOH HOH . C 3 HOH A 207 707 213 HOH HOH . C 3 HOH A 208 708 4 HOH HOH . C 3 HOH A 209 709 177 HOH HOH . C 3 HOH A 210 710 16 HOH HOH . C 3 HOH A 211 711 206 HOH HOH . C 3 HOH A 212 712 188 HOH HOH . C 3 HOH A 213 713 264 HOH HOH . C 3 HOH A 214 714 261 HOH HOH . C 3 HOH A 215 715 132 HOH HOH . C 3 HOH A 216 716 147 HOH HOH . C 3 HOH A 217 717 33 HOH HOH . C 3 HOH A 218 718 163 HOH HOH . C 3 HOH A 219 719 153 HOH HOH . C 3 HOH A 220 720 101 HOH HOH . C 3 HOH A 221 721 162 HOH HOH . C 3 HOH A 222 722 75 HOH HOH . C 3 HOH A 223 723 98 HOH HOH . C 3 HOH A 224 724 251 HOH HOH . C 3 HOH A 225 725 185 HOH HOH . C 3 HOH A 226 726 42 HOH HOH . C 3 HOH A 227 727 228 HOH HOH . C 3 HOH A 228 728 124 HOH HOH . C 3 HOH A 229 729 165 HOH HOH . C 3 HOH A 230 730 265 HOH HOH . C 3 HOH A 231 731 208 HOH HOH . C 3 HOH A 232 732 72 HOH HOH . C 3 HOH A 233 733 209 HOH HOH . C 3 HOH A 234 734 268 HOH HOH . C 3 HOH A 235 735 85 HOH HOH . C 3 HOH A 236 736 146 HOH HOH . C 3 HOH A 237 737 154 HOH HOH . C 3 HOH A 238 738 249 HOH HOH . C 3 HOH A 239 739 149 HOH HOH . C 3 HOH A 240 740 119 HOH HOH . C 3 HOH A 241 741 180 HOH HOH . C 3 HOH A 242 742 99 HOH HOH . C 3 HOH A 243 743 41 HOH HOH . C 3 HOH A 244 744 225 HOH HOH . C 3 HOH A 245 745 236 HOH HOH . C 3 HOH A 246 746 158 HOH HOH . C 3 HOH A 247 747 203 HOH HOH . C 3 HOH A 248 748 242 HOH HOH . C 3 HOH A 249 749 219 HOH HOH . C 3 HOH A 250 750 212 HOH HOH . C 3 HOH A 251 751 210 HOH HOH . C 3 HOH A 252 752 157 HOH HOH . C 3 HOH A 253 753 269 HOH HOH . C 3 HOH A 254 754 224 HOH HOH . C 3 HOH A 255 755 231 HOH HOH . C 3 HOH A 256 756 172 HOH HOH . C 3 HOH A 257 757 250 HOH HOH . C 3 HOH A 258 758 92 HOH HOH . C 3 HOH A 259 759 7 HOH HOH . C 3 HOH A 260 760 125 HOH HOH . C 3 HOH A 261 761 246 HOH HOH . C 3 HOH A 262 762 244 HOH HOH . C 3 HOH A 263 763 253 HOH HOH . C 3 HOH A 264 764 148 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . B 2 32.447 4.63 58.65 1 46.45 ? C1 GOL 401 A 1 HETATM 2 O O1 GOL . . . B 2 32.248 3.684 57.593 1 45.8 ? O1 GOL 401 A 1 HETATM 3 C C2 GOL . . . B 2 31.173 4.951 59.433 1 37.16 ? C2 GOL 401 A 1 HETATM 4 O O2 GOL . . . B 2 30.01 4.573 58.666 1 34.89 ? O2 GOL 401 A 1 HETATM 5 C C3 GOL . . . B 2 31.113 4.271 60.81 1 50.98 ? C3 GOL 401 A 1 HETATM 6 O O3 GOL . . . B 2 30.103 4.922 61.601 1 54.08 ? O3 GOL 401 A 1 # _model_server_stats.io_time_ms 74 _model_server_stats.parse_time_ms 17 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 368 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 6 #