data_5ZXG # _model_server_result.job_id 7815mFmI0T91bgRlsbQElg _model_server_result.datetime_utc '2025-08-31 04:23:17' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5zxg # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":501}' # _entry.id 5ZXG # _exptl.entry_id 5ZXG _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 40.078 _entity.id 2 _entity.src_method nat _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 113.61 _cell.angle_gamma 90 _cell.entry_id 5ZXG _cell.length_a 48.25 _cell.length_b 179.798 _cell.length_c 63.412 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5ZXG _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASN 43 A ASN 23 1_555 C CA CA . A CA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.61 ? metalc ? metalc2 A O ASP 45 A ASP 25 1_555 C CA CA . A CA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.724 ? metalc ? metalc3 A OD1 ASP 49 A ASP 29 1_555 C CA CA . A CA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.599 ? metalc ? metalc4 A O GLY 67 A GLY 47 1_555 C CA CA . A CA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.445 ? metalc ? metalc5 A OD2 ASP 69 A ASP 49 1_555 C CA CA . A CA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.503 ? metalc ? metalc6 C CA CA . A CA 501 1_555 D O HOH . A HOH 685 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.821 ? # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5ZXG _atom_sites.fract_transf_matrix[1][1] 0.020725 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.009058 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005562 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01721 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 CA A 1 501 1 CA CA . D 3 HOH A 1 601 1080 HOH HOH . D 3 HOH A 2 602 43 HOH HOH . D 3 HOH A 3 603 650 HOH HOH . D 3 HOH A 4 604 1065 HOH HOH . D 3 HOH A 5 605 1 HOH HOH . D 3 HOH A 6 606 135 HOH HOH . D 3 HOH A 7 607 122 HOH HOH . D 3 HOH A 8 608 427 HOH HOH . D 3 HOH A 9 609 211 HOH HOH . D 3 HOH A 10 610 120 HOH HOH . D 3 HOH A 11 611 1107 HOH HOH . D 3 HOH A 12 612 107 HOH HOH . D 3 HOH A 13 613 58 HOH HOH . D 3 HOH A 14 614 1050 HOH HOH . D 3 HOH A 15 615 194 HOH HOH . D 3 HOH A 16 616 39 HOH HOH . D 3 HOH A 17 617 102 HOH HOH . D 3 HOH A 18 618 418 HOH HOH . D 3 HOH A 19 619 276 HOH HOH . D 3 HOH A 20 620 347 HOH HOH . D 3 HOH A 21 621 236 HOH HOH . D 3 HOH A 22 622 7 HOH HOH . D 3 HOH A 23 623 50 HOH HOH . D 3 HOH A 24 624 232 HOH HOH . D 3 HOH A 25 625 20 HOH HOH . D 3 HOH A 26 626 291 HOH HOH . D 3 HOH A 27 627 84 HOH HOH . D 3 HOH A 28 628 332 HOH HOH . D 3 HOH A 29 629 403 HOH HOH . D 3 HOH A 30 630 213 HOH HOH . D 3 HOH A 31 631 100 HOH HOH . D 3 HOH A 32 632 85 HOH HOH . D 3 HOH A 33 633 83 HOH HOH . D 3 HOH A 34 634 187 HOH HOH . D 3 HOH A 35 635 339 HOH HOH . D 3 HOH A 36 636 447 HOH HOH . D 3 HOH A 37 637 355 HOH HOH . D 3 HOH A 38 638 1056 HOH HOH . D 3 HOH A 39 639 364 HOH HOH . D 3 HOH A 40 640 381 HOH HOH . D 3 HOH A 41 641 242 HOH HOH . D 3 HOH A 42 642 172 HOH HOH . D 3 HOH A 43 643 297 HOH HOH . D 3 HOH A 44 644 21 HOH HOH . D 3 HOH A 45 645 216 HOH HOH . D 3 HOH A 46 646 231 HOH HOH . D 3 HOH A 47 647 662 HOH HOH . D 3 HOH A 48 648 235 HOH HOH . D 3 HOH A 49 649 1082 HOH HOH . D 3 HOH A 50 650 51 HOH HOH . D 3 HOH A 51 651 63 HOH HOH . D 3 HOH A 52 652 129 HOH HOH . D 3 HOH A 53 653 98 HOH HOH . D 3 HOH A 54 654 393 HOH HOH . D 3 HOH A 55 655 68 HOH HOH . D 3 HOH A 56 656 392 HOH HOH . D 3 HOH A 57 657 349 HOH HOH . D 3 HOH A 58 658 1068 HOH HOH . D 3 HOH A 59 659 657 HOH HOH . D 3 HOH A 60 660 171 HOH HOH . D 3 HOH A 61 661 360 HOH HOH . D 3 HOH A 62 662 180 HOH HOH . D 3 HOH A 63 663 382 HOH HOH . D 3 HOH A 64 664 11 HOH HOH . D 3 HOH A 65 665 149 HOH HOH . D 3 HOH A 66 666 150 HOH HOH . D 3 HOH A 67 667 48 HOH HOH . D 3 HOH A 68 668 126 HOH HOH . D 3 HOH A 69 669 32 HOH HOH . D 3 HOH A 70 670 342 HOH HOH . D 3 HOH A 71 671 52 HOH HOH . D 3 HOH A 72 672 675 HOH HOH . D 3 HOH A 73 673 185 HOH HOH . D 3 HOH A 74 674 672 HOH HOH . D 3 HOH A 75 675 49 HOH HOH . D 3 HOH A 76 676 912 HOH HOH . D 3 HOH A 77 677 397 HOH HOH . D 3 HOH A 78 678 40 HOH HOH . D 3 HOH A 79 679 182 HOH HOH . D 3 HOH A 80 680 156 HOH HOH . D 3 HOH A 81 681 119 HOH HOH . D 3 HOH A 82 682 688 HOH HOH . D 3 HOH A 83 683 204 HOH HOH . D 3 HOH A 84 684 274 HOH HOH . D 3 HOH A 85 685 26 HOH HOH . D 3 HOH A 86 686 383 HOH HOH . D 3 HOH A 87 687 659 HOH HOH . D 3 HOH A 88 688 262 HOH HOH . D 3 HOH A 89 689 681 HOH HOH . D 3 HOH A 90 690 298 HOH HOH . D 3 HOH A 91 691 109 HOH HOH . D 3 HOH A 92 692 128 HOH HOH . D 3 HOH A 93 693 725 HOH HOH . D 3 HOH A 94 694 15 HOH HOH . D 3 HOH A 95 695 1040 HOH HOH . D 3 HOH A 96 696 314 HOH HOH . D 3 HOH A 97 697 1090 HOH HOH . D 3 HOH A 98 698 494 HOH HOH . D 3 HOH A 99 699 422 HOH HOH . D 3 HOH A 100 700 338 HOH HOH . D 3 HOH A 101 701 727 HOH HOH . D 3 HOH A 102 702 18 HOH HOH . D 3 HOH A 103 703 181 HOH HOH . D 3 HOH A 104 704 137 HOH HOH . D 3 HOH A 105 705 69 HOH HOH . D 3 HOH A 106 706 203 HOH HOH . D 3 HOH A 107 707 1052 HOH HOH . D 3 HOH A 108 708 652 HOH HOH . D 3 HOH A 109 709 1074 HOH HOH . D 3 HOH A 110 710 268 HOH HOH . D 3 HOH A 111 711 82 HOH HOH . D 3 HOH A 112 712 958 HOH HOH . D 3 HOH A 113 713 161 HOH HOH . D 3 HOH A 114 714 95 HOH HOH . D 3 HOH A 115 715 722 HOH HOH . D 3 HOH A 116 716 253 HOH HOH . D 3 HOH A 117 717 190 HOH HOH . D 3 HOH A 118 718 353 HOH HOH . D 3 HOH A 119 719 1086 HOH HOH . D 3 HOH A 120 720 60 HOH HOH . D 3 HOH A 121 721 378 HOH HOH . D 3 HOH A 122 722 38 HOH HOH . D 3 HOH A 123 723 331 HOH HOH . D 3 HOH A 124 724 24 HOH HOH . D 3 HOH A 125 725 724 HOH HOH . D 3 HOH A 126 726 398 HOH HOH . D 3 HOH A 127 727 307 HOH HOH . D 3 HOH A 128 728 238 HOH HOH . D 3 HOH A 129 729 173 HOH HOH . D 3 HOH A 130 730 1126 HOH HOH . D 3 HOH A 131 731 408 HOH HOH . D 3 HOH A 132 732 277 HOH HOH . D 3 HOH A 133 733 660 HOH HOH . D 3 HOH A 134 734 765 HOH HOH . D 3 HOH A 135 735 335 HOH HOH . D 3 HOH A 136 736 96 HOH HOH . D 3 HOH A 137 737 1106 HOH HOH . D 3 HOH A 138 738 679 HOH HOH . D 3 HOH A 139 739 385 HOH HOH . D 3 HOH A 140 740 666 HOH HOH . D 3 HOH A 141 741 239 HOH HOH . D 3 HOH A 142 742 286 HOH HOH . D 3 HOH A 143 743 1113 HOH HOH . D 3 HOH A 144 744 524 HOH HOH . D 3 HOH A 145 745 658 HOH HOH . D 3 HOH A 146 746 47 HOH HOH . D 3 HOH A 147 747 716 HOH HOH . D 3 HOH A 148 748 23 HOH HOH . D 3 HOH A 149 749 110 HOH HOH . D 3 HOH A 150 750 41 HOH HOH . D 3 HOH A 151 751 223 HOH HOH . D 3 HOH A 152 752 257 HOH HOH . D 3 HOH A 153 753 717 HOH HOH . D 3 HOH A 154 754 191 HOH HOH . D 3 HOH A 155 755 887 HOH HOH . D 3 HOH A 156 756 199 HOH HOH . D 3 HOH A 157 757 254 HOH HOH . D 3 HOH A 158 758 131 HOH HOH . D 3 HOH A 159 759 215 HOH HOH . D 3 HOH A 160 760 965 HOH HOH . D 3 HOH A 161 761 839 HOH HOH . D 3 HOH A 162 762 89 HOH HOH . D 3 HOH A 163 763 474 HOH HOH . D 3 HOH A 164 764 93 HOH HOH . D 3 HOH A 165 765 621 HOH HOH . D 3 HOH A 166 766 246 HOH HOH . D 3 HOH A 167 767 655 HOH HOH . D 3 HOH A 168 768 635 HOH HOH . D 3 HOH A 169 769 1039 HOH HOH . D 3 HOH A 170 770 271 HOH HOH . D 3 HOH A 171 771 136 HOH HOH . D 3 HOH A 172 772 207 HOH HOH . D 3 HOH A 173 773 166 HOH HOH . E 3 HOH B 1 501 1081 HOH HOH . E 3 HOH B 2 502 804 HOH HOH . E 3 HOH B 3 503 1067 HOH HOH . E 3 HOH B 4 504 705 HOH HOH . E 3 HOH B 5 505 711 HOH HOH . E 3 HOH B 6 506 1072 HOH HOH . E 3 HOH B 7 507 684 HOH HOH . E 3 HOH B 8 508 699 HOH HOH . E 3 HOH B 9 509 696 HOH HOH . E 3 HOH B 10 510 712 HOH HOH . E 3 HOH B 11 511 1077 HOH HOH . E 3 HOH B 12 512 1046 HOH HOH . E 3 HOH B 13 513 1121 HOH HOH . E 3 HOH B 14 514 703 HOH HOH . E 3 HOH B 15 515 1083 HOH HOH . E 3 HOH B 16 516 1069 HOH HOH . E 3 HOH B 17 517 1060 HOH HOH . E 3 HOH B 18 518 759 HOH HOH . E 3 HOH B 19 519 1061 HOH HOH . E 3 HOH B 20 520 691 HOH HOH . E 3 HOH B 21 521 320 HOH HOH . E 3 HOH B 22 522 694 HOH HOH . E 3 HOH B 23 523 1070 HOH HOH . E 3 HOH B 24 524 1127 HOH HOH . E 3 HOH B 25 525 1055 HOH HOH . E 3 HOH B 26 526 698 HOH HOH . E 3 HOH B 27 527 700 HOH HOH . E 3 HOH B 28 528 1103 HOH HOH . E 3 HOH B 29 529 1093 HOH HOH . E 3 HOH B 30 530 794 HOH HOH . E 3 HOH B 31 531 1049 HOH HOH . E 3 HOH B 32 532 729 HOH HOH . E 3 HOH B 33 533 1123 HOH HOH . E 3 HOH B 34 534 1058 HOH HOH . E 3 HOH B 35 535 683 HOH HOH . E 3 HOH B 36 536 693 HOH HOH . E 3 HOH B 37 537 692 HOH HOH . E 3 HOH B 38 538 686 HOH HOH . E 3 HOH B 39 539 1051 HOH HOH . E 3 HOH B 40 540 682 HOH HOH . E 3 HOH B 41 541 1085 HOH HOH . E 3 HOH B 42 542 1079 HOH HOH . E 3 HOH B 43 543 710 HOH HOH . E 3 HOH B 44 544 1120 HOH HOH . E 3 HOH B 45 545 701 HOH HOH . E 3 HOH B 46 546 687 HOH HOH . E 3 HOH B 47 547 1131 HOH HOH . E 3 HOH B 48 548 695 HOH HOH . E 3 HOH B 49 549 690 HOH HOH . E 3 HOH B 50 550 859 HOH HOH . E 3 HOH B 51 551 1063 HOH HOH . E 3 HOH B 52 552 798 HOH HOH . E 3 HOH B 53 553 704 HOH HOH . E 3 HOH B 54 554 1043 HOH HOH . E 3 HOH B 55 555 721 HOH HOH . E 3 HOH B 56 556 709 HOH HOH . E 3 HOH B 57 557 1099 HOH HOH . E 3 HOH B 58 558 141 HOH HOH . E 3 HOH B 59 559 685 HOH HOH . E 3 HOH B 60 560 786 HOH HOH . E 3 HOH B 61 561 1111 HOH HOH . E 3 HOH B 62 562 1042 HOH HOH . E 3 HOH B 63 563 702 HOH HOH . E 3 HOH B 64 564 1114 HOH HOH . E 3 HOH B 65 565 730 HOH HOH . E 3 HOH B 66 566 707 HOH HOH . E 3 HOH B 67 567 706 HOH HOH . E 3 HOH B 68 568 813 HOH HOH . E 3 HOH B 69 569 689 HOH HOH . E 3 HOH B 70 570 1132 HOH HOH . E 3 HOH B 71 571 832 HOH HOH . E 3 HOH B 72 572 968 HOH HOH . E 3 HOH B 73 573 787 HOH HOH . E 3 HOH B 74 574 776 HOH HOH . E 3 HOH B 75 575 1095 HOH HOH . E 3 HOH B 76 576 823 HOH HOH . E 3 HOH B 77 577 714 HOH HOH . E 3 HOH B 78 578 1096 HOH HOH . E 3 HOH B 79 579 1104 HOH HOH . E 3 HOH B 80 580 720 HOH HOH . E 3 HOH B 81 581 733 HOH HOH . E 3 HOH B 82 582 1122 HOH HOH . E 3 HOH B 83 583 723 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id C _atom_site.label_entity_id 2 _atom_site.Cartn_x -11.014 _atom_site.Cartn_y 116.116 _atom_site.Cartn_z 32.812 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 41.02 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 501 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 27 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 389 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #