data_5ZXK # _model_server_result.job_id cjH8APAwew_NS3p_jHG9cg _model_server_result.datetime_utc '2024-11-24 00:06:20' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5zxk # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":501}' # _entry.id 5ZXK # _exptl.entry_id 5ZXK _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 262.092 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2E)-4-hydroxy-3-methylbut-2-en-1-yl trihydrogen diphosphate' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5ZXK _cell.length_a 45.131 _cell.length_b 125.668 _cell.length_c 39.046 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5ZXK _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C5 H12 O8 P2' _chem_comp.formula_weight 262.092 _chem_comp.id H6P _chem_comp.mon_nstd_flag . _chem_comp.name '(2E)-4-hydroxy-3-methylbut-2-en-1-yl trihydrogen diphosphate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O14 P13 H6P doub 129 n n O15 P13 H6P sing 130 n n O16 P13 H6P sing 131 n n P13 O29 H6P sing 132 n n O15 HO15 H6P sing 133 n n O16 P17 H6P sing 134 n n O19 P17 H6P doub 135 n n P17 O20 H6P sing 136 n n P17 O18 H6P sing 137 n n O18 HO18 H6P sing 138 n n O20 HO20 H6P sing 139 n n C21 C30 H6P sing 140 n n C21 H21 H6P sing 141 n n C21 H21A H6P sing 142 n n C21 H21B H6P sing 143 n n C30 C27 H6P doub 144 e n C28 C27 H6P sing 145 n n C27 H27 H6P sing 146 n n O29 C28 H6P sing 147 n n C28 H28 H6P sing 148 n n C28 H28A H6P sing 149 n n C30 C31 H6P sing 150 n n C31 O33 H6P sing 151 n n C31 H31 H6P sing 152 n n C31 H31A H6P sing 153 n n O33 HO33 H6P sing 154 n n # _atom_sites.entry_id 5ZXK _atom_sites.fract_transf_matrix[1][1] 0.022158 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007957 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.025611 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 H6P A 1 501 501 H6P H6P . C 3 HOH A 1 601 601 HOH HOH . C 3 HOH A 2 602 602 HOH HOH . C 3 HOH A 3 603 603 HOH HOH . C 3 HOH A 4 604 604 HOH HOH . C 3 HOH A 5 605 605 HOH HOH . C 3 HOH A 6 606 606 HOH HOH . C 3 HOH A 7 607 607 HOH HOH . C 3 HOH A 8 608 608 HOH HOH . C 3 HOH A 9 609 609 HOH HOH . C 3 HOH A 10 610 610 HOH HOH . C 3 HOH A 11 611 611 HOH HOH . C 3 HOH A 12 612 612 HOH HOH . C 3 HOH A 13 613 613 HOH HOH . C 3 HOH A 14 614 614 HOH HOH . C 3 HOH A 15 615 615 HOH HOH . C 3 HOH A 16 616 616 HOH HOH . C 3 HOH A 17 617 617 HOH HOH . C 3 HOH A 18 618 618 HOH HOH . C 3 HOH A 19 619 620 HOH HOH . C 3 HOH A 20 620 621 HOH HOH . C 3 HOH A 21 621 622 HOH HOH . C 3 HOH A 22 622 623 HOH HOH . C 3 HOH A 23 623 624 HOH HOH . C 3 HOH A 24 624 625 HOH HOH . C 3 HOH A 25 625 626 HOH HOH . C 3 HOH A 26 626 619 HOH HOH . C 3 HOH A 27 627 627 HOH HOH . C 3 HOH A 28 628 628 HOH HOH . C 3 HOH A 29 629 629 HOH HOH . C 3 HOH A 30 630 630 HOH HOH . C 3 HOH A 31 631 631 HOH HOH . C 3 HOH A 32 632 632 HOH HOH . C 3 HOH A 33 633 633 HOH HOH . C 3 HOH A 34 634 634 HOH HOH . C 3 HOH A 35 635 635 HOH HOH . C 3 HOH A 36 636 636 HOH HOH . C 3 HOH A 37 637 637 HOH HOH . C 3 HOH A 38 638 638 HOH HOH . C 3 HOH A 39 639 639 HOH HOH . C 3 HOH A 40 640 640 HOH HOH . C 3 HOH A 41 641 641 HOH HOH . C 3 HOH A 42 642 642 HOH HOH . C 3 HOH A 43 643 643 HOH HOH . C 3 HOH A 44 644 644 HOH HOH . C 3 HOH A 45 645 645 HOH HOH . C 3 HOH A 46 646 646 HOH HOH . C 3 HOH A 47 647 647 HOH HOH . C 3 HOH A 48 648 648 HOH HOH . C 3 HOH A 49 649 649 HOH HOH . C 3 HOH A 50 650 650 HOH HOH . C 3 HOH A 51 651 651 HOH HOH . C 3 HOH A 52 652 652 HOH HOH . C 3 HOH A 53 653 653 HOH HOH . C 3 HOH A 54 654 654 HOH HOH . C 3 HOH A 55 655 655 HOH HOH . C 3 HOH A 56 656 656 HOH HOH . C 3 HOH A 57 657 657 HOH HOH . C 3 HOH A 58 658 658 HOH HOH . C 3 HOH A 59 659 659 HOH HOH . C 3 HOH A 60 660 660 HOH HOH . C 3 HOH A 61 661 661 HOH HOH . C 3 HOH A 62 662 662 HOH HOH . C 3 HOH A 63 663 663 HOH HOH . C 3 HOH A 64 664 664 HOH HOH . C 3 HOH A 65 665 665 HOH HOH . C 3 HOH A 66 666 666 HOH HOH . C 3 HOH A 67 667 667 HOH HOH . C 3 HOH A 68 668 668 HOH HOH . C 3 HOH A 69 669 669 HOH HOH . C 3 HOH A 70 670 670 HOH HOH . C 3 HOH A 71 671 671 HOH HOH . C 3 HOH A 72 672 672 HOH HOH . C 3 HOH A 73 673 673 HOH HOH . C 3 HOH A 74 674 674 HOH HOH . C 3 HOH A 75 675 675 HOH HOH . C 3 HOH A 76 676 676 HOH HOH . C 3 HOH A 77 677 677 HOH HOH . C 3 HOH A 78 678 678 HOH HOH . C 3 HOH A 79 679 679 HOH HOH . C 3 HOH A 80 680 680 HOH HOH . C 3 HOH A 81 681 681 HOH HOH . C 3 HOH A 82 682 682 HOH HOH . C 3 HOH A 83 683 683 HOH HOH . C 3 HOH A 84 684 684 HOH HOH . C 3 HOH A 85 685 685 HOH HOH . C 3 HOH A 86 686 686 HOH HOH . C 3 HOH A 87 687 687 HOH HOH . C 3 HOH A 88 688 688 HOH HOH . C 3 HOH A 89 689 689 HOH HOH . C 3 HOH A 90 690 690 HOH HOH . C 3 HOH A 91 691 691 HOH HOH . C 3 HOH A 92 692 692 HOH HOH . C 3 HOH A 93 693 693 HOH HOH . C 3 HOH A 94 694 694 HOH HOH . C 3 HOH A 95 695 695 HOH HOH . C 3 HOH A 96 696 696 HOH HOH . C 3 HOH A 97 697 697 HOH HOH . C 3 HOH A 98 698 698 HOH HOH . C 3 HOH A 99 699 699 HOH HOH . C 3 HOH A 100 700 700 HOH HOH . C 3 HOH A 101 701 701 HOH HOH . C 3 HOH A 102 702 702 HOH HOH . C 3 HOH A 103 703 703 HOH HOH . C 3 HOH A 104 704 704 HOH HOH . C 3 HOH A 105 705 705 HOH HOH . C 3 HOH A 106 706 706 HOH HOH . C 3 HOH A 107 707 707 HOH HOH . C 3 HOH A 108 708 708 HOH HOH . C 3 HOH A 109 709 709 HOH HOH . C 3 HOH A 110 710 710 HOH HOH . C 3 HOH A 111 711 711 HOH HOH . C 3 HOH A 112 712 712 HOH HOH . C 3 HOH A 113 713 713 HOH HOH . C 3 HOH A 114 714 714 HOH HOH . C 3 HOH A 115 715 715 HOH HOH . C 3 HOH A 116 716 716 HOH HOH . C 3 HOH A 117 717 717 HOH HOH . C 3 HOH A 118 718 718 HOH HOH . C 3 HOH A 119 719 719 HOH HOH . C 3 HOH A 120 720 720 HOH HOH . C 3 HOH A 121 721 721 HOH HOH . C 3 HOH A 122 722 722 HOH HOH . C 3 HOH A 123 723 723 HOH HOH . C 3 HOH A 124 724 724 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P13 H6P . . . B 2 44.551 148.531 59.758 1 31.85 ? P13 H6P 501 A 1 HETATM 2 O O14 H6P . . . B 2 43.824 148.158 58.503 1 38.92 ? O14 H6P 501 A 1 HETATM 3 O O15 H6P . . . B 2 43.839 149.305 60.82 1 33.8 ? O15 H6P 501 A 1 HETATM 4 O O16 H6P . . . B 2 45.254 147.257 60.47 1 29.4 ? O16 H6P 501 A 1 HETATM 5 P P17 H6P . . . B 2 46.304 146.047 60.085 1 24.96 ? P17 H6P 501 A 1 HETATM 6 O O18 H6P . . . B 2 45.499 144.768 60.341 1 23.52 ? O18 H6P 501 A 1 HETATM 7 O O19 H6P . . . B 2 46.654 146.349 58.632 1 24.64 ? O19 H6P 501 A 1 HETATM 8 O O20 H6P . . . B 2 47.544 146.113 61.001 1 22.75 ? O20 H6P 501 A 1 HETATM 9 C C21 H6P . . . B 2 46.783 152.977 60.243 1 33.59 ? C21 H6P 501 A 1 HETATM 10 C C27 H6P . . . B 2 47.747 150.785 59.527 1 31.74 ? C27 H6P 501 A 1 HETATM 11 C C28 H6P . . . B 2 46.76 149.878 60.178 1 31.8 ? C28 H6P 501 A 1 HETATM 12 O O29 H6P . . . B 2 45.838 149.321 59.21 1 32.24 ? O29 H6P 501 A 1 HETATM 13 C C30 H6P . . . B 2 47.742 152.119 59.493 1 30.99 ? C30 H6P 501 A 1 HETATM 14 C C31 H6P . . . B 2 48.801 152.86 58.612 1 31.66 ? C31 H6P 501 A 1 HETATM 15 O O33 H6P . . . B 2 49.42 151.996 57.659 1 26.48 ? O33 H6P 501 A 1 # _model_server_stats.io_time_ms 61 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 20 _model_server_stats.query_time_ms 300 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 15 #