data_5ZYF # _model_server_result.job_id va-MKVcQdFzsGKZ5L4-yTg _model_server_result.datetime_utc '2025-03-30 01:01:21' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5zyf # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":103}' # _entry.id 5ZYF # _exptl.entry_id 5ZYF _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 9 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5ZYF _cell.length_a 50.771 _cell.length_b 75.292 _cell.length_c 145.702 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5ZYF _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 PISA dimeric 2 author_and_software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,G,H,I,J,K,L,M,N,O,V,W 1 1 C,D,P,Q,R,S,X,Y 2 1 E,F,T,U,Z,AA 3 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 H N N ? 3 I N N ? 3 J N N ? 3 K N N ? 3 L N N ? 3 N N N ? 3 O N N ? 3 T N N ? 3 U N N # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 70 n n C1 C2 EDO sing 71 n n C1 H11 EDO sing 72 n n C1 H12 EDO sing 73 n n O1 HO1 EDO sing 74 n n C2 O2 EDO sing 75 n n C2 H21 EDO sing 76 n n C2 H22 EDO sing 77 n n O2 HO2 EDO sing 78 n n # _atom_sites.entry_id 5ZYF _atom_sites.fract_transf_matrix[1][1] 0.019696 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013282 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006863 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 2 SO4 A 1 101 7 SO4 SO4 . H 3 EDO A 1 102 1 EDO EDO . I 3 EDO A 1 103 2 EDO EDO . J 3 EDO A 1 104 5 EDO EDO . K 3 EDO A 1 105 6 EDO EDO . L 3 EDO A 1 106 10 EDO EDO . M 2 SO4 B 1 101 4 SO4 SO4 . N 3 EDO B 1 102 3 EDO EDO . O 3 EDO B 1 103 9 EDO EDO . P 2 SO4 C 1 101 6 SO4 SO4 . Q 2 SO4 C 1 102 8 SO4 SO4 . R 2 SO4 C 1 103 11 SO4 SO4 . S 2 SO4 D 1 101 9 SO4 SO4 . T 3 EDO E 1 101 4 EDO EDO . U 3 EDO E 1 102 8 EDO EDO . V 4 HOH A 1 201 210 HOH HOH . V 4 HOH A 2 202 156 HOH HOH . V 4 HOH A 3 203 22 HOH HOH . V 4 HOH A 4 204 65 HOH HOH . V 4 HOH A 5 205 176 HOH HOH . V 4 HOH A 6 206 223 HOH HOH . V 4 HOH A 7 207 123 HOH HOH . V 4 HOH A 8 208 195 HOH HOH . V 4 HOH A 9 209 121 HOH HOH . V 4 HOH A 10 210 12 HOH HOH . V 4 HOH A 11 211 126 HOH HOH . V 4 HOH A 12 212 6 HOH HOH . V 4 HOH A 13 213 55 HOH HOH . V 4 HOH A 14 214 155 HOH HOH . V 4 HOH A 15 215 10 HOH HOH . V 4 HOH A 16 216 27 HOH HOH . V 4 HOH A 17 217 40 HOH HOH . V 4 HOH A 18 218 19 HOH HOH . V 4 HOH A 19 219 57 HOH HOH . V 4 HOH A 20 220 212 HOH HOH . V 4 HOH A 21 221 9 HOH HOH . V 4 HOH A 22 222 199 HOH HOH . V 4 HOH A 23 223 61 HOH HOH . V 4 HOH A 24 224 287 HOH HOH . V 4 HOH A 25 225 4 HOH HOH . V 4 HOH A 26 226 160 HOH HOH . V 4 HOH A 27 227 192 HOH HOH . V 4 HOH A 28 228 161 HOH HOH . V 4 HOH A 29 229 92 HOH HOH . V 4 HOH A 30 230 59 HOH HOH . V 4 HOH A 31 231 70 HOH HOH . V 4 HOH A 32 232 118 HOH HOH . V 4 HOH A 33 233 5 HOH HOH . V 4 HOH A 34 234 135 HOH HOH . V 4 HOH A 35 235 64 HOH HOH . V 4 HOH A 36 236 97 HOH HOH . V 4 HOH A 37 237 194 HOH HOH . V 4 HOH A 38 238 17 HOH HOH . V 4 HOH A 39 239 35 HOH HOH . V 4 HOH A 40 240 230 HOH HOH . V 4 HOH A 41 241 11 HOH HOH . V 4 HOH A 42 242 259 HOH HOH . V 4 HOH A 43 243 3 HOH HOH . V 4 HOH A 44 244 23 HOH HOH . V 4 HOH A 45 245 110 HOH HOH . V 4 HOH A 46 246 62 HOH HOH . V 4 HOH A 47 247 87 HOH HOH . V 4 HOH A 48 248 206 HOH HOH . V 4 HOH A 49 249 147 HOH HOH . V 4 HOH A 50 250 209 HOH HOH . V 4 HOH A 51 251 14 HOH HOH . V 4 HOH A 52 252 220 HOH HOH . V 4 HOH A 53 253 103 HOH HOH . V 4 HOH A 54 254 25 HOH HOH . V 4 HOH A 55 255 187 HOH HOH . V 4 HOH A 56 256 159 HOH HOH . V 4 HOH A 57 257 144 HOH HOH . V 4 HOH A 58 258 270 HOH HOH . V 4 HOH A 59 259 175 HOH HOH . V 4 HOH A 60 260 96 HOH HOH . V 4 HOH A 61 261 58 HOH HOH . V 4 HOH A 62 262 267 HOH HOH . V 4 HOH A 63 263 200 HOH HOH . V 4 HOH A 64 264 115 HOH HOH . V 4 HOH A 65 265 214 HOH HOH . V 4 HOH A 66 266 271 HOH HOH . V 4 HOH A 67 267 1 HOH HOH . V 4 HOH A 68 268 153 HOH HOH . V 4 HOH A 69 269 207 HOH HOH . V 4 HOH A 70 270 221 HOH HOH . V 4 HOH A 71 271 79 HOH HOH . V 4 HOH A 72 272 172 HOH HOH . V 4 HOH A 73 273 202 HOH HOH . V 4 HOH A 74 274 46 HOH HOH . V 4 HOH A 75 275 180 HOH HOH . V 4 HOH A 76 276 269 HOH HOH . V 4 HOH A 77 277 80 HOH HOH . V 4 HOH A 78 278 151 HOH HOH . V 4 HOH A 79 279 293 HOH HOH . V 4 HOH A 80 280 242 HOH HOH . V 4 HOH A 81 281 105 HOH HOH . V 4 HOH A 82 282 88 HOH HOH . V 4 HOH A 83 283 204 HOH HOH . V 4 HOH A 84 284 198 HOH HOH . V 4 HOH A 85 285 217 HOH HOH . V 4 HOH A 86 286 273 HOH HOH . V 4 HOH A 87 287 131 HOH HOH . V 4 HOH A 88 288 134 HOH HOH . V 4 HOH A 89 289 71 HOH HOH . V 4 HOH A 90 290 181 HOH HOH . V 4 HOH A 91 291 89 HOH HOH . V 4 HOH A 92 292 196 HOH HOH . V 4 HOH A 93 293 277 HOH HOH . W 4 HOH B 1 201 186 HOH HOH . W 4 HOH B 2 202 86 HOH HOH . W 4 HOH B 3 203 283 HOH HOH . W 4 HOH B 4 204 141 HOH HOH . W 4 HOH B 5 205 72 HOH HOH . W 4 HOH B 6 206 193 HOH HOH . W 4 HOH B 7 207 26 HOH HOH . W 4 HOH B 8 208 231 HOH HOH . W 4 HOH B 9 209 292 HOH HOH . W 4 HOH B 10 210 182 HOH HOH . W 4 HOH B 11 211 216 HOH HOH . W 4 HOH B 12 212 24 HOH HOH . W 4 HOH B 13 213 215 HOH HOH . W 4 HOH B 14 214 95 HOH HOH . W 4 HOH B 15 215 124 HOH HOH . W 4 HOH B 16 216 261 HOH HOH . W 4 HOH B 17 217 109 HOH HOH . W 4 HOH B 18 218 56 HOH HOH . W 4 HOH B 19 219 7 HOH HOH . W 4 HOH B 20 220 169 HOH HOH . W 4 HOH B 21 221 76 HOH HOH . W 4 HOH B 22 222 8 HOH HOH . W 4 HOH B 23 223 205 HOH HOH . W 4 HOH B 24 224 15 HOH HOH . W 4 HOH B 25 225 16 HOH HOH . W 4 HOH B 26 226 21 HOH HOH . W 4 HOH B 27 227 67 HOH HOH . W 4 HOH B 28 228 52 HOH HOH . W 4 HOH B 29 229 82 HOH HOH . W 4 HOH B 30 230 150 HOH HOH . W 4 HOH B 31 231 48 HOH HOH . W 4 HOH B 32 232 285 HOH HOH . W 4 HOH B 33 233 20 HOH HOH . W 4 HOH B 34 234 250 HOH HOH . W 4 HOH B 35 235 68 HOH HOH . W 4 HOH B 36 236 29 HOH HOH . W 4 HOH B 37 237 33 HOH HOH . W 4 HOH B 38 238 38 HOH HOH . W 4 HOH B 39 239 37 HOH HOH . W 4 HOH B 40 240 119 HOH HOH . W 4 HOH B 41 241 139 HOH HOH . W 4 HOH B 42 242 125 HOH HOH . W 4 HOH B 43 243 54 HOH HOH . W 4 HOH B 44 244 129 HOH HOH . W 4 HOH B 45 245 114 HOH HOH . W 4 HOH B 46 246 44 HOH HOH . W 4 HOH B 47 247 34 HOH HOH . W 4 HOH B 48 248 154 HOH HOH . W 4 HOH B 49 249 30 HOH HOH . W 4 HOH B 50 250 83 HOH HOH . W 4 HOH B 51 251 31 HOH HOH . W 4 HOH B 52 252 69 HOH HOH . W 4 HOH B 53 253 149 HOH HOH . W 4 HOH B 54 254 28 HOH HOH . W 4 HOH B 55 255 117 HOH HOH . W 4 HOH B 56 256 234 HOH HOH . W 4 HOH B 57 257 120 HOH HOH . W 4 HOH B 58 258 106 HOH HOH . W 4 HOH B 59 259 245 HOH HOH . W 4 HOH B 60 260 143 HOH HOH . W 4 HOH B 61 261 91 HOH HOH . W 4 HOH B 62 262 264 HOH HOH . W 4 HOH B 63 263 137 HOH HOH . W 4 HOH B 64 264 262 HOH HOH . W 4 HOH B 65 265 286 HOH HOH . W 4 HOH B 66 266 174 HOH HOH . W 4 HOH B 67 267 148 HOH HOH . W 4 HOH B 68 268 189 HOH HOH . W 4 HOH B 69 269 99 HOH HOH . W 4 HOH B 70 270 81 HOH HOH . W 4 HOH B 71 271 248 HOH HOH . W 4 HOH B 72 272 173 HOH HOH . W 4 HOH B 73 273 232 HOH HOH . W 4 HOH B 74 274 166 HOH HOH . W 4 HOH B 75 275 73 HOH HOH . W 4 HOH B 76 276 66 HOH HOH . W 4 HOH B 77 277 60 HOH HOH . W 4 HOH B 78 278 213 HOH HOH . W 4 HOH B 79 279 133 HOH HOH . W 4 HOH B 80 280 184 HOH HOH . W 4 HOH B 81 281 2 HOH HOH . W 4 HOH B 82 282 138 HOH HOH . W 4 HOH B 83 283 53 HOH HOH . W 4 HOH B 84 284 246 HOH HOH . W 4 HOH B 85 285 224 HOH HOH . W 4 HOH B 86 286 116 HOH HOH . W 4 HOH B 87 287 201 HOH HOH . W 4 HOH B 88 288 112 HOH HOH . W 4 HOH B 89 289 167 HOH HOH . W 4 HOH B 90 290 278 HOH HOH . W 4 HOH B 91 291 279 HOH HOH . X 4 HOH C 1 201 229 HOH HOH . X 4 HOH C 2 202 93 HOH HOH . X 4 HOH C 3 203 178 HOH HOH . X 4 HOH C 4 204 236 HOH HOH . X 4 HOH C 5 205 284 HOH HOH . X 4 HOH C 6 206 239 HOH HOH . X 4 HOH C 7 207 107 HOH HOH . X 4 HOH C 8 208 32 HOH HOH . X 4 HOH C 9 209 78 HOH HOH . X 4 HOH C 10 210 227 HOH HOH . X 4 HOH C 11 211 98 HOH HOH . X 4 HOH C 12 212 258 HOH HOH . X 4 HOH C 13 213 75 HOH HOH . X 4 HOH C 14 214 257 HOH HOH . X 4 HOH C 15 215 288 HOH HOH . X 4 HOH C 16 216 74 HOH HOH . X 4 HOH C 17 217 179 HOH HOH . X 4 HOH C 18 218 272 HOH HOH . X 4 HOH C 19 219 47 HOH HOH . X 4 HOH C 20 220 145 HOH HOH . X 4 HOH C 21 221 235 HOH HOH . X 4 HOH C 22 222 164 HOH HOH . X 4 HOH C 23 223 256 HOH HOH . X 4 HOH C 24 224 39 HOH HOH . X 4 HOH C 25 225 13 HOH HOH . X 4 HOH C 26 226 188 HOH HOH . X 4 HOH C 27 227 113 HOH HOH . X 4 HOH C 28 228 104 HOH HOH . X 4 HOH C 29 229 85 HOH HOH . X 4 HOH C 30 230 50 HOH HOH . X 4 HOH C 31 231 108 HOH HOH . X 4 HOH C 32 232 280 HOH HOH . X 4 HOH C 33 233 102 HOH HOH . X 4 HOH C 34 234 77 HOH HOH . X 4 HOH C 35 235 233 HOH HOH . X 4 HOH C 36 236 260 HOH HOH . X 4 HOH C 37 237 140 HOH HOH . X 4 HOH C 38 238 130 HOH HOH . X 4 HOH C 39 239 63 HOH HOH . Y 4 HOH D 1 201 168 HOH HOH . Y 4 HOH D 2 202 162 HOH HOH . Y 4 HOH D 3 203 268 HOH HOH . Y 4 HOH D 4 204 146 HOH HOH . Y 4 HOH D 5 205 43 HOH HOH . Y 4 HOH D 6 206 142 HOH HOH . Y 4 HOH D 7 207 122 HOH HOH . Y 4 HOH D 8 208 152 HOH HOH . Y 4 HOH D 9 209 228 HOH HOH . Y 4 HOH D 10 210 45 HOH HOH . Y 4 HOH D 11 211 251 HOH HOH . Y 4 HOH D 12 212 41 HOH HOH . Y 4 HOH D 13 213 111 HOH HOH . Y 4 HOH D 14 214 101 HOH HOH . Y 4 HOH D 15 215 18 HOH HOH . Y 4 HOH D 16 216 247 HOH HOH . Y 4 HOH D 17 217 36 HOH HOH . Y 4 HOH D 18 218 275 HOH HOH . Y 4 HOH D 19 219 208 HOH HOH . Y 4 HOH D 20 220 249 HOH HOH . Y 4 HOH D 21 221 49 HOH HOH . Y 4 HOH D 22 222 100 HOH HOH . Y 4 HOH D 23 223 253 HOH HOH . Y 4 HOH D 24 224 136 HOH HOH . Y 4 HOH D 25 225 190 HOH HOH . Y 4 HOH D 26 226 84 HOH HOH . Y 4 HOH D 27 227 218 HOH HOH . Y 4 HOH D 28 228 225 HOH HOH . Y 4 HOH D 29 229 42 HOH HOH . Y 4 HOH D 30 230 132 HOH HOH . Y 4 HOH D 31 231 254 HOH HOH . Y 4 HOH D 32 232 240 HOH HOH . Y 4 HOH D 33 233 237 HOH HOH . Z 4 HOH E 1 201 165 HOH HOH . Z 4 HOH E 2 202 263 HOH HOH . Z 4 HOH E 3 203 252 HOH HOH . Z 4 HOH E 4 204 219 HOH HOH . Z 4 HOH E 5 205 222 HOH HOH . Z 4 HOH E 6 206 171 HOH HOH . Z 4 HOH E 7 207 191 HOH HOH . Z 4 HOH E 8 208 90 HOH HOH . Z 4 HOH E 9 209 276 HOH HOH . Z 4 HOH E 10 210 282 HOH HOH . Z 4 HOH E 11 211 226 HOH HOH . Z 4 HOH E 12 212 177 HOH HOH . Z 4 HOH E 13 213 163 HOH HOH . Z 4 HOH E 14 214 157 HOH HOH . Z 4 HOH E 15 215 289 HOH HOH . Z 4 HOH E 16 216 51 HOH HOH . Z 4 HOH E 17 217 265 HOH HOH . Z 4 HOH E 18 218 197 HOH HOH . Z 4 HOH E 19 219 281 HOH HOH . Z 4 HOH E 20 220 266 HOH HOH . Z 4 HOH E 21 221 290 HOH HOH . Z 4 HOH E 22 222 291 HOH HOH . Z 4 HOH E 23 223 94 HOH HOH . AA 4 HOH F 1 101 127 HOH HOH . AA 4 HOH F 2 102 244 HOH HOH . AA 4 HOH F 3 103 238 HOH HOH . AA 4 HOH F 4 104 203 HOH HOH . AA 4 HOH F 5 105 170 HOH HOH . AA 4 HOH F 6 106 211 HOH HOH . AA 4 HOH F 7 107 128 HOH HOH . AA 4 HOH F 8 108 255 HOH HOH . AA 4 HOH F 9 109 183 HOH HOH . AA 4 HOH F 10 110 274 HOH HOH . AA 4 HOH F 11 111 243 HOH HOH . AA 4 HOH F 12 112 185 HOH HOH . AA 4 HOH F 13 113 241 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . I 3 4.849 4.701 107.454 1 39.25 ? C1 EDO 103 A 1 HETATM 2 O O1 EDO . . . I 3 5.261 6.037 107.147 1 41.69 ? O1 EDO 103 A 1 HETATM 3 C C2 EDO . . . I 3 5.798 3.708 106.806 1 47.73 ? C2 EDO 103 A 1 HETATM 4 O O2 EDO . . . I 3 5.404 2.374 107.156 1 51.8 ? O2 EDO 103 A 1 # _model_server_stats.io_time_ms 72 _model_server_stats.parse_time_ms 26 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 298 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 4 #