data_5ZYI # _model_server_result.job_id iVe98L5Ww0E78D2LoQ8AhQ _model_server_result.datetime_utc '2025-08-29 22:08:27' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5zyi # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":600}' # _entry.id 5ZYI # _exptl.entry_id 5ZYI _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 449.605 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-[4-[4-pentyl-3-[(1~{S},2~{R})-2-pyridin-2-ylcyclopropyl]phenyl]phenyl]sulfonylethanol _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5ZYI _cell.length_a 60.1 _cell.length_b 60.1 _cell.length_c 153.46 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5ZYI _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C27 H31 N O3 S' _chem_comp.formula_weight 449.605 _chem_comp.id 9ML _chem_comp.mon_nstd_flag . _chem_comp.name 2-[4-[4-pentyl-3-[(1~{S},2~{R})-2-pyridin-2-ylcyclopropyl]phenyl]phenyl]sulfonylethanol _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C28 C27 9ML sing 1 n n C26 C27 9ML sing 2 n n C26 C25 9ML sing 3 n n C25 C24 9ML sing 4 n n C23 C1 9ML doub 5 n y C23 C3 9ML sing 6 n y C1 C6 9ML sing 7 n y C24 C3 9ML sing 8 n n O3 C21 9ML sing 9 n n C3 C4 9ML doub 10 n y C21 C20 9ML sing 11 n n C11 C12 9ML doub 12 n y C11 C10 9ML sing 13 n y C6 C10 9ML sing 14 n n C6 C5 9ML doub 15 n y C12 C7 9ML sing 16 n y C10 C9 9ML doub 17 n y C4 C5 9ML sing 18 n y C4 C13 9ML sing 19 n n C20 S1 9ML sing 20 n n O2 S1 9ML doub 21 n n C7 S1 9ML sing 22 n n C7 C8 9ML doub 23 n y C19 N1 9ML doub 24 n y C19 C15 9ML sing 25 n y N1 C18 9ML sing 26 n y C22 C13 9ML sing 27 n n C22 C14 9ML sing 28 n n C9 C8 9ML sing 29 n y C13 C14 9ML sing 30 n n S1 O1 9ML doub 31 n n C15 C16 9ML doub 32 n y C18 C14 9ML sing 33 n n C18 C17 9ML doub 34 n y C16 C17 9ML sing 35 n y C12 H1 9ML sing 36 n n C13 H2 9ML sing 37 n n C14 H3 9ML sing 38 n n C15 H4 9ML sing 39 n n C17 H5 9ML sing 40 n n C19 H6 9ML sing 41 n n C20 H7 9ML sing 42 n n C20 H8 9ML sing 43 n n C5 H9 9ML sing 44 n n C9 H10 9ML sing 45 n n C21 H11 9ML sing 46 n n C21 H12 9ML sing 47 n n O3 H13 9ML sing 48 n n C8 H14 9ML sing 49 n n C11 H15 9ML sing 50 n n C24 H16 9ML sing 51 n n C24 H17 9ML sing 52 n n C25 H18 9ML sing 53 n n C25 H19 9ML sing 54 n n C26 H20 9ML sing 55 n n C26 H21 9ML sing 56 n n C27 H22 9ML sing 57 n n C27 H23 9ML sing 58 n n C28 H24 9ML sing 59 n n C28 H25 9ML sing 60 n n C28 H26 9ML sing 61 n n C23 H27 9ML sing 62 n n C1 H28 9ML sing 63 n n C22 H29 9ML sing 64 n n C22 H30 9ML sing 65 n n C16 H31 9ML sing 66 n n # _atom_sites.entry_id 5ZYI _atom_sites.fract_transf_matrix[1][1] 0.016639 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016639 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006516 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 9ML A 1 600 600 9ML EXP . C 3 HOH A 1 701 78 HOH HOH . C 3 HOH A 2 702 3 HOH HOH . C 3 HOH A 3 703 48 HOH HOH . C 3 HOH A 4 704 41 HOH HOH . C 3 HOH A 5 705 96 HOH HOH . C 3 HOH A 6 706 55 HOH HOH . C 3 HOH A 7 707 42 HOH HOH . C 3 HOH A 8 708 52 HOH HOH . C 3 HOH A 9 709 103 HOH HOH . C 3 HOH A 10 710 21 HOH HOH . C 3 HOH A 11 711 8 HOH HOH . C 3 HOH A 12 712 27 HOH HOH . C 3 HOH A 13 713 64 HOH HOH . C 3 HOH A 14 714 62 HOH HOH . C 3 HOH A 15 715 75 HOH HOH . C 3 HOH A 16 716 18 HOH HOH . C 3 HOH A 17 717 9 HOH HOH . C 3 HOH A 18 718 17 HOH HOH . C 3 HOH A 19 719 31 HOH HOH . C 3 HOH A 20 720 53 HOH HOH . C 3 HOH A 21 721 69 HOH HOH . C 3 HOH A 22 722 61 HOH HOH . C 3 HOH A 23 723 6 HOH HOH . C 3 HOH A 24 724 25 HOH HOH . C 3 HOH A 25 725 70 HOH HOH . C 3 HOH A 26 726 56 HOH HOH . C 3 HOH A 27 727 35 HOH HOH . C 3 HOH A 28 728 4 HOH HOH . C 3 HOH A 29 729 45 HOH HOH . C 3 HOH A 30 730 36 HOH HOH . C 3 HOH A 31 731 47 HOH HOH . C 3 HOH A 32 732 60 HOH HOH . C 3 HOH A 33 733 22 HOH HOH . C 3 HOH A 34 734 32 HOH HOH . C 3 HOH A 35 735 68 HOH HOH . C 3 HOH A 36 736 94 HOH HOH . C 3 HOH A 37 737 50 HOH HOH . C 3 HOH A 38 738 34 HOH HOH . C 3 HOH A 39 739 12 HOH HOH . C 3 HOH A 40 740 63 HOH HOH . C 3 HOH A 41 741 81 HOH HOH . C 3 HOH A 42 742 7 HOH HOH . C 3 HOH A 43 743 40 HOH HOH . C 3 HOH A 44 744 99 HOH HOH . C 3 HOH A 45 745 72 HOH HOH . C 3 HOH A 46 746 104 HOH HOH . C 3 HOH A 47 747 51 HOH HOH . C 3 HOH A 48 748 58 HOH HOH . C 3 HOH A 49 749 26 HOH HOH . C 3 HOH A 50 750 39 HOH HOH . C 3 HOH A 51 751 105 HOH HOH . C 3 HOH A 52 752 19 HOH HOH . C 3 HOH A 53 753 90 HOH HOH . C 3 HOH A 54 754 5 HOH HOH . C 3 HOH A 55 755 43 HOH HOH . C 3 HOH A 56 756 23 HOH HOH . C 3 HOH A 57 757 71 HOH HOH . C 3 HOH A 58 758 37 HOH HOH . C 3 HOH A 59 759 73 HOH HOH . C 3 HOH A 60 760 2 HOH HOH . C 3 HOH A 61 761 30 HOH HOH . C 3 HOH A 62 762 87 HOH HOH . C 3 HOH A 63 763 54 HOH HOH . C 3 HOH A 64 764 59 HOH HOH . C 3 HOH A 65 765 28 HOH HOH . C 3 HOH A 66 766 100 HOH HOH . C 3 HOH A 67 767 1 HOH HOH . C 3 HOH A 68 768 15 HOH HOH . C 3 HOH A 69 769 49 HOH HOH . C 3 HOH A 70 770 86 HOH HOH . C 3 HOH A 71 771 10 HOH HOH . C 3 HOH A 72 772 33 HOH HOH . C 3 HOH A 73 773 11 HOH HOH . C 3 HOH A 74 774 24 HOH HOH . C 3 HOH A 75 775 91 HOH HOH . C 3 HOH A 76 776 65 HOH HOH . C 3 HOH A 77 777 89 HOH HOH . C 3 HOH A 78 778 98 HOH HOH . C 3 HOH A 79 779 46 HOH HOH . C 3 HOH A 80 780 102 HOH HOH . C 3 HOH A 81 781 20 HOH HOH . C 3 HOH A 82 782 66 HOH HOH . C 3 HOH A 83 783 14 HOH HOH . C 3 HOH A 84 784 38 HOH HOH . C 3 HOH A 85 785 76 HOH HOH . C 3 HOH A 86 786 16 HOH HOH . C 3 HOH A 87 787 44 HOH HOH . C 3 HOH A 88 788 57 HOH HOH . C 3 HOH A 89 789 67 HOH HOH . C 3 HOH A 90 790 79 HOH HOH . C 3 HOH A 91 791 84 HOH HOH . C 3 HOH A 92 792 92 HOH HOH . C 3 HOH A 93 793 97 HOH HOH . C 3 HOH A 94 794 82 HOH HOH . C 3 HOH A 95 795 88 HOH HOH . C 3 HOH A 96 796 29 HOH HOH . C 3 HOH A 97 797 74 HOH HOH . C 3 HOH A 98 798 95 HOH HOH . C 3 HOH A 99 799 80 HOH HOH . C 3 HOH A 100 800 13 HOH HOH . C 3 HOH A 101 801 77 HOH HOH . C 3 HOH A 102 802 93 HOH HOH . C 3 HOH A 103 803 101 HOH HOH . C 3 HOH A 104 804 85 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C12 9ML . . . B 2 -30.051 6.324 -7.276 1 20.12 ? C12 9ML 600 A 1 HETATM 2 C C13 9ML . . . B 2 -36.316 2.782 -5.711 1 27.41 ? C13 9ML 600 A 1 HETATM 3 C C14 9ML . . . B 2 -35.733 1.806 -4.674 1 25.83 ? C14 9ML 600 A 1 HETATM 4 C C15 9ML . . . B 2 -31.757 0.399 -5.044 1 32 ? C15 9ML 600 A 1 HETATM 5 C C17 9ML . . . B 2 -33.448 1.447 -3.653 1 30.25 ? C17 9ML 600 A 1 HETATM 6 C C18 9ML . . . B 2 -34.332 1.321 -4.73 1 30.09 ? C18 9ML 600 A 1 HETATM 7 C C19 9ML . . . B 2 -32.689 0.308 -6.087 1 28.82 ? C19 9ML 600 A 1 HETATM 8 C C20 9ML . . . B 2 -26.53 5.405 -6.292 1 28.46 ? C20 9ML 600 A 1 HETATM 9 N N1 9ML . . . B 2 -33.966 0.753 -5.938 1 34.13 ? N1 9ML 600 A 1 HETATM 10 C C5 9ML . . . B 2 -34.158 3.827 -6.408 1 24.04 ? C5 9ML 600 A 1 HETATM 11 C C6 9ML . . . B 2 -33.339 4.493 -7.352 1 23.34 ? C6 9ML 600 A 1 HETATM 12 C C7 9ML . . . B 2 -29.478 5.78 -6.143 1 23.57 ? C7 9ML 600 A 1 HETATM 13 C C9 9ML . . . B 2 -31.412 4.446 -5.742 1 26.26 ? C9 9ML 600 A 1 HETATM 14 O O1 9ML . . . B 2 -27.754 6.203 -4.173 1 23.75 ? O1 9ML 600 A 1 HETATM 15 S S1 9ML . . . B 2 -27.892 6.433 -5.626 1 24.29 ? S1 9ML 600 A 1 HETATM 16 O O2 9ML . . . B 2 -27.835 7.765 -6.262 1 20.87 ? O2 9ML 600 A 1 HETATM 17 C C21 9ML . . . B 2 -26.348 5.51 -7.819 1 30.13 ? C21 9ML 600 A 1 HETATM 18 O O3 9ML . . . B 2 -27.292 4.671 -8.438 1 27.05 ? O3 9ML 600 A 1 HETATM 19 C C8 9ML . . . B 2 -30.113 4.831 -5.324 1 23.92 ? C8 9ML 600 A 1 HETATM 20 C C10 9ML . . . B 2 -32.012 4.945 -6.921 1 23.7 ? C10 9ML 600 A 1 HETATM 21 C C11 9ML . . . B 2 -31.332 5.9 -7.698 1 23.58 ? C11 9ML 600 A 1 HETATM 22 C C4 9ML . . . B 2 -35.443 3.418 -6.767 1 25.45 ? C4 9ML 600 A 1 HETATM 23 C C3 9ML . . . B 2 -35.893 3.611 -8.103 1 26.08 ? C3 9ML 600 A 1 HETATM 24 C C24 9ML . . . B 2 -37.315 3.175 -8.45 1 26.5 ? C24 9ML 600 A 1 HETATM 25 C C25 9ML . . . B 2 -37.278 1.823 -9.195 1 32.3 ? C25 9ML 600 A 1 HETATM 26 C C26 9ML . . . B 2 -38.764 1.502 -9.443 1 33.8 ? C26 9ML 600 A 1 HETATM 27 C C27 9ML . . . B 2 -38.961 -0.005 -9.355 1 36.86 ? C27 9ML 600 A 1 HETATM 28 C C28 9ML . . . B 2 -40.402 -0.337 -9.757 1 41.16 ? C28 9ML 600 A 1 HETATM 29 C C23 9ML . . . B 2 -35.099 4.288 -9.052 1 24.07 ? C23 9ML 600 A 1 HETATM 30 C C1 9ML . . . B 2 -33.8 4.712 -8.669 1 22.08 ? C1 9ML 600 A 1 HETATM 31 C C22 9ML . . . B 2 -36.606 1.316 -5.789 1 27.87 ? C22 9ML 600 A 1 HETATM 32 C C16 9ML . . . B 2 -32.142 0.953 -3.782 1 31.41 ? C16 9ML 600 A 1 # _model_server_stats.io_time_ms 23 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 411 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 32 #