data_5ZZG # _model_server_result.job_id pQEQiU0xLvJe_uenfkS9Fw _model_server_result.datetime_utc '2024-11-17 02:59:46' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5zzg # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":201}' # _entry.id 5ZZG # _exptl.entry_id 5ZZG _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 616.487 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PROTOPORPHYRIN IX CONTAINING FE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5ZZG _cell.length_a 39.899 _cell.length_b 49.477 _cell.length_c 77.333 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5ZZG _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id metalc _struct_conn.details ? _struct_conn.id metalc1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id NE2 _struct_conn.ptnr1_label_comp_id HIS _struct_conn.ptnr1_label_seq_id 93 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id HIS _struct_conn.ptnr1_auth_seq_id 93 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id FE _struct_conn.ptnr2_label_comp_id HEM _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id HEM _struct_conn.ptnr2_auth_seq_id 201 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.15 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C34 H32 Fe N4 O4' _chem_comp.formula_weight 616.487 _chem_comp.id HEM _chem_comp.mon_nstd_flag . _chem_comp.name 'PROTOPORPHYRIN IX CONTAINING FE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEME # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CHA C1A HEM sing 116 n n CHA C4D HEM doub 117 n n CHA HHA HEM sing 118 n n CHB C4A HEM sing 119 n n CHB C1B HEM doub 120 n n CHB HHB HEM sing 121 n n CHC C4B HEM sing 122 n n CHC C1C HEM doub 123 n n CHC HHC HEM sing 124 n n CHD C4C HEM doub 125 n n CHD C1D HEM sing 126 n n CHD HHD HEM sing 127 n n C1A C2A HEM doub 128 n y C1A NA HEM sing 129 n y C2A C3A HEM sing 130 n y C2A CAA HEM sing 131 n n C3A C4A HEM doub 132 n y C3A CMA HEM sing 133 n n C4A NA HEM sing 134 n y CMA HMA HEM sing 135 n n CMA HMAA HEM sing 136 n n CMA HMAB HEM sing 137 n n CAA CBA HEM sing 138 n n CAA HAA HEM sing 139 n n CAA HAAA HEM sing 140 n n CBA CGA HEM sing 141 n n CBA HBA HEM sing 142 n n CBA HBAA HEM sing 143 n n CGA O1A HEM doub 144 n n CGA O2A HEM sing 145 n n C1B C2B HEM sing 146 n n C1B NB HEM sing 147 n n C2B C3B HEM doub 148 n n C2B CMB HEM sing 149 n n C3B C4B HEM sing 150 n n C3B CAB HEM sing 151 n n C4B NB HEM doub 152 n n CMB HMB HEM sing 153 n n CMB HMBA HEM sing 154 n n CMB HMBB HEM sing 155 n n CAB CBB HEM doub 156 n n CAB HAB HEM sing 157 n n CBB HBB HEM sing 158 n n CBB HBBA HEM sing 159 n n C1C C2C HEM sing 160 n y C1C NC HEM sing 161 n y C2C C3C HEM doub 162 n y C2C CMC HEM sing 163 n n C3C C4C HEM sing 164 n y C3C CAC HEM sing 165 n n C4C NC HEM sing 166 n y CMC HMC HEM sing 167 n n CMC HMCA HEM sing 168 n n CMC HMCB HEM sing 169 n n CAC CBC HEM doub 170 n n CAC HAC HEM sing 171 n n CBC HBC HEM sing 172 n n CBC HBCA HEM sing 173 n n C1D C2D HEM sing 174 n n C1D ND HEM doub 175 n n C2D C3D HEM doub 176 n n C2D CMD HEM sing 177 n n C3D C4D HEM sing 178 n n C3D CAD HEM sing 179 n n C4D ND HEM sing 180 n n CMD HMD HEM sing 181 n n CMD HMDA HEM sing 182 n n CMD HMDB HEM sing 183 n n CAD CBD HEM sing 184 n n CAD HAD HEM sing 185 n n CAD HADA HEM sing 186 n n CBD CGD HEM sing 187 n n CBD HBD HEM sing 188 n n CBD HBDA HEM sing 189 n n CGD O1D HEM doub 190 n n CGD O2D HEM sing 191 n n O2A H2A HEM sing 192 n n O2D H2D HEM sing 193 n n FE NA HEM sing 194 n n FE NB HEM sing 195 n n FE NC HEM sing 196 n n FE ND HEM sing 197 n n # _atom_sites.entry_id 5ZZG _atom_sites.fract_transf_matrix[1][1] 0.025063 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.020211 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012931 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HEM A 1 201 1 HEM HEM . C 3 T6C A 1 202 1 T6C T6C . D 4 HOH A 1 301 72 HOH HOH . D 4 HOH A 2 302 95 HOH HOH . D 4 HOH A 3 303 45 HOH HOH . D 4 HOH A 4 304 69 HOH HOH . D 4 HOH A 5 305 20 HOH HOH . D 4 HOH A 6 306 94 HOH HOH . D 4 HOH A 7 307 9 HOH HOH . D 4 HOH A 8 308 46 HOH HOH . D 4 HOH A 9 309 56 HOH HOH . D 4 HOH A 10 310 66 HOH HOH . D 4 HOH A 11 311 4 HOH HOH . D 4 HOH A 12 312 47 HOH HOH . D 4 HOH A 13 313 79 HOH HOH . D 4 HOH A 14 314 49 HOH HOH . D 4 HOH A 15 315 3 HOH HOH . D 4 HOH A 16 316 104 HOH HOH . D 4 HOH A 17 317 36 HOH HOH . D 4 HOH A 18 318 90 HOH HOH . D 4 HOH A 19 319 50 HOH HOH . D 4 HOH A 20 320 57 HOH HOH . D 4 HOH A 21 321 1 HOH HOH . D 4 HOH A 22 322 59 HOH HOH . D 4 HOH A 23 323 86 HOH HOH . D 4 HOH A 24 324 34 HOH HOH . D 4 HOH A 25 325 52 HOH HOH . D 4 HOH A 26 326 63 HOH HOH . D 4 HOH A 27 327 51 HOH HOH . D 4 HOH A 28 328 82 HOH HOH . D 4 HOH A 29 329 35 HOH HOH . D 4 HOH A 30 330 25 HOH HOH . D 4 HOH A 31 331 2 HOH HOH . D 4 HOH A 32 332 28 HOH HOH . D 4 HOH A 33 333 85 HOH HOH . D 4 HOH A 34 334 13 HOH HOH . D 4 HOH A 35 335 5 HOH HOH . D 4 HOH A 36 336 55 HOH HOH . D 4 HOH A 37 337 64 HOH HOH . D 4 HOH A 38 338 27 HOH HOH . D 4 HOH A 39 339 33 HOH HOH . D 4 HOH A 40 340 12 HOH HOH . D 4 HOH A 41 341 29 HOH HOH . D 4 HOH A 42 342 92 HOH HOH . D 4 HOH A 43 343 14 HOH HOH . D 4 HOH A 44 344 21 HOH HOH . D 4 HOH A 45 345 41 HOH HOH . D 4 HOH A 46 346 99 HOH HOH . D 4 HOH A 47 347 43 HOH HOH . D 4 HOH A 48 348 88 HOH HOH . D 4 HOH A 49 349 62 HOH HOH . D 4 HOH A 50 350 58 HOH HOH . D 4 HOH A 51 351 87 HOH HOH . D 4 HOH A 52 352 24 HOH HOH . D 4 HOH A 53 353 97 HOH HOH . D 4 HOH A 54 354 76 HOH HOH . D 4 HOH A 55 355 40 HOH HOH . D 4 HOH A 56 356 98 HOH HOH . D 4 HOH A 57 357 109 HOH HOH . D 4 HOH A 58 358 67 HOH HOH . D 4 HOH A 59 359 100 HOH HOH . D 4 HOH A 60 360 31 HOH HOH . D 4 HOH A 61 361 78 HOH HOH . D 4 HOH A 62 362 53 HOH HOH . D 4 HOH A 63 363 73 HOH HOH . D 4 HOH A 64 364 44 HOH HOH . D 4 HOH A 65 365 84 HOH HOH . D 4 HOH A 66 366 77 HOH HOH . D 4 HOH A 67 367 60 HOH HOH . D 4 HOH A 68 368 26 HOH HOH . D 4 HOH A 69 369 17 HOH HOH . D 4 HOH A 70 370 8 HOH HOH . D 4 HOH A 71 371 68 HOH HOH . D 4 HOH A 72 372 6 HOH HOH . D 4 HOH A 73 373 22 HOH HOH . D 4 HOH A 74 374 11 HOH HOH . D 4 HOH A 75 375 32 HOH HOH . D 4 HOH A 76 376 108 HOH HOH . D 4 HOH A 77 377 16 HOH HOH . D 4 HOH A 78 378 23 HOH HOH . D 4 HOH A 79 379 7 HOH HOH . D 4 HOH A 80 380 19 HOH HOH . D 4 HOH A 81 381 83 HOH HOH . D 4 HOH A 82 382 18 HOH HOH . D 4 HOH A 83 383 91 HOH HOH . D 4 HOH A 84 384 61 HOH HOH . D 4 HOH A 85 385 96 HOH HOH . D 4 HOH A 86 386 65 HOH HOH . D 4 HOH A 87 387 101 HOH HOH . D 4 HOH A 88 388 81 HOH HOH . D 4 HOH A 89 389 106 HOH HOH . D 4 HOH A 90 390 103 HOH HOH . D 4 HOH A 91 391 71 HOH HOH . D 4 HOH A 92 392 75 HOH HOH . D 4 HOH A 93 393 102 HOH HOH . D 4 HOH A 94 394 15 HOH HOH . D 4 HOH A 95 395 54 HOH HOH . D 4 HOH A 96 396 107 HOH HOH . D 4 HOH A 97 397 74 HOH HOH . D 4 HOH A 98 398 30 HOH HOH . D 4 HOH A 99 399 39 HOH HOH . D 4 HOH A 100 400 42 HOH HOH . D 4 HOH A 101 401 80 HOH HOH . D 4 HOH A 102 402 38 HOH HOH . D 4 HOH A 103 403 48 HOH HOH . D 4 HOH A 104 404 105 HOH HOH . D 4 HOH A 105 405 37 HOH HOH . D 4 HOH A 106 406 89 HOH HOH . D 4 HOH A 107 407 70 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CHA HEM . . . B 2 -6.693 -9.68 7.531 1 23.91 ? CHA HEM 201 A 1 HETATM 2 C CHB HEM . . . B 2 -5.369 -7.122 3.611 1 21.53 ? CHB HEM 201 A 1 HETATM 3 C CHC HEM . . . B 2 -5.563 -3.053 6.371 1 24.59 ? CHC HEM 201 A 1 HETATM 4 C CHD HEM . . . B 2 -6.077 -5.653 10.401 1 27.31 ? CHD HEM 201 A 1 HETATM 5 C C1A HEM . . . B 2 -6.375 -9.297 6.173 1 21.94 ? C1A HEM 201 A 1 HETATM 6 C C2A HEM . . . B 2 -6.244 -10.286 5.131 1 21.07 ? C2A HEM 201 A 1 HETATM 7 C C3A HEM . . . B 2 -5.843 -9.556 3.964 1 20.91 ? C3A HEM 201 A 1 HETATM 8 C C4A HEM . . . B 2 -5.753 -8.179 4.51 1 21.38 ? C4A HEM 201 A 1 HETATM 9 C CMA HEM . . . B 2 -5.584 -10.043 2.579 1 19.98 ? CMA HEM 201 A 1 HETATM 10 C CAA HEM . . . B 2 -6.515 -11.774 5.242 1 21.71 ? CAA HEM 201 A 1 HETATM 11 C CBA HEM . . . B 2 -7.847 -12.024 4.564 1 22.35 ? CBA HEM 201 A 1 HETATM 12 C CGA HEM . . . B 2 -8.993 -11.237 5.101 1 25.59 ? CGA HEM 201 A 1 HETATM 13 O O1A HEM . . . B 2 -9.642 -10.464 4.359 1 26.09 ? O1A HEM 201 A 1 HETATM 14 O O2A HEM . . . B 2 -9.299 -11.394 6.384 1 26.76 ? O2A HEM 201 A 1 HETATM 15 C C1B HEM . . . B 2 -5.187 -5.765 4.013 1 22.87 ? C1B HEM 201 A 1 HETATM 16 C C2B HEM . . . B 2 -4.763 -4.699 3.073 1 22.07 ? C2B HEM 201 A 1 HETATM 17 C C3B HEM . . . B 2 -4.812 -3.534 3.955 1 22.62 ? C3B HEM 201 A 1 HETATM 18 C C4B HEM . . . B 2 -5.031 -3.929 5.343 1 20.63 ? C4B HEM 201 A 1 HETATM 19 C CMB HEM . . . B 2 -4.47 -4.897 1.622 1 20.99 ? CMB HEM 201 A 1 HETATM 20 C CAB HEM . . . B 2 -4.33 -2.148 3.638 1 25.09 ? CAB HEM 201 A 1 HETATM 21 C CBB HEM . . . B 2 -3.618 -1.747 2.576 1 25.87 ? CBB HEM 201 A 1 HETATM 22 C C1C HEM . . . B 2 -5.719 -3.467 7.758 1 24.74 ? C1C HEM 201 A 1 HETATM 23 C C2C HEM . . . B 2 -5.55 -2.418 8.801 1 25.39 ? C2C HEM 201 A 1 HETATM 24 C C3C HEM . . . B 2 -5.72 -3.151 10.018 1 25.66 ? C3C HEM 201 A 1 HETATM 25 C C4C HEM . . . B 2 -5.887 -4.551 9.565 1 27.63 ? C4C HEM 201 A 1 HETATM 26 C CMC HEM . . . B 2 -5.344 -0.939 8.632 1 28.77 ? CMC HEM 201 A 1 HETATM 27 C CAC HEM . . . B 2 -5.604 -2.424 11.36 1 33.94 ? CAC HEM 201 A 1 HETATM 28 C CBC HEM . . . B 2 -5.63 -3.047 12.514 1 40.2 ? CBC HEM 201 A 1 HETATM 29 C C1D HEM . . . B 2 -6.682 -6.79 9.81 1 25.31 ? C1D HEM 201 A 1 HETATM 30 C C2D HEM . . . B 2 -6.855 -7.902 10.736 1 27.7 ? C2D HEM 201 A 1 HETATM 31 C C3D HEM . . . B 2 -6.947 -9.162 10.029 1 28.49 ? C3D HEM 201 A 1 HETATM 32 C C4D HEM . . . B 2 -6.681 -8.774 8.638 1 26.74 ? C4D HEM 201 A 1 HETATM 33 C CMD HEM . . . B 2 -6.992 -7.672 12.237 1 29.06 ? CMD HEM 201 A 1 HETATM 34 C CAD HEM . . . B 2 -7.177 -10.51 10.585 1 30.08 ? CAD HEM 201 A 1 HETATM 35 C CBD HEM . . . B 2 -5.762 -11.04 10.696 1 34.23 ? CBD HEM 201 A 1 HETATM 36 C CGD HEM . . . B 2 -5.613 -12.437 11.242 1 43.51 ? CGD HEM 201 A 1 HETATM 37 O O1D HEM . . . B 2 -6.214 -13.379 10.737 1 45.95 ? O1D HEM 201 A 1 HETATM 38 O O2D HEM . . . B 2 -4.763 -12.633 12.264 1 54.86 ? O2D HEM 201 A 1 HETATM 39 N NA HEM . . . B 2 -6.001 -8.077 5.812 1 22.72 ? NA HEM 201 A 1 HETATM 40 N NB HEM . . . B 2 -5.401 -5.338 5.255 1 19.8 ? NB HEM 201 A 1 HETATM 41 N NC HEM . . . B 2 -5.882 -4.747 8.229 1 22.07 ? NC HEM 201 A 1 HETATM 42 N ND HEM . . . B 2 -6.422 -7.485 8.521 1 24.08 ? ND HEM 201 A 1 HETATM 43 FE FE HEM . . . B 2 -6.119 -6.297 6.89 1 22.69 ? FE HEM 201 A 1 # _model_server_stats.io_time_ms 64 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 211 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 43 #