data_6A03
#
_model_server_result.job_id            tVzyOshwzZ3FCr8juGdOkw 
_model_server_result.datetime_utc      '2024-11-28 09:11:08' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6a03 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":401}' 
#
_entry.id    6A03 
#
_exptl.entry_id    6A03 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              658.412 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "(2R,3R,3aS,5R,7aR,9R,10R,10aS,12R,14aR)-2,9-bis(6-amino-9H-purin-9-yl)octahydro-2H,7H-difuro[3,2-d:3',2'-j][1,3,7,9,2,8 ]tetraoxadiphosphacyclododecine-3,5,10,12-tetrol 5,12-dioxide" 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6A03 
_cell.length_a            50.517 
_cell.length_b            80.459 
_cell.length_c            101.564 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6A03 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C20 H24 N10 O12 P2' 
_chem_comp.formula_weight    658.412 
_chem_comp.id                2BA 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "(2R,3R,3aS,5R,7aR,9R,10R,10aS,12R,14aR)-2,9-bis(6-amino-9H-purin-9-yl)octahydro-2H,7H-difuro[3,2-d:3',2'-j][1,3,7,9,2,8 ]tetraoxadiphosphacyclododecine-3,5,10,12-tetrol 5,12-dioxide" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     "bis-(3',5')-cyclic-dimeric-Adenosine-monophosphate" 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
P O1P 2BA doub 1 n n 
P O2P 2BA sing 2 n n 
P O5' 2BA sing 3 n n 
P "O3'1" 2BA sing 4 n n 
O5' C5' 2BA sing 5 n n 
C5' C4' 2BA sing 6 n n 
C4' O4' 2BA sing 7 n n 
C4' C3' 2BA sing 8 n n 
O4' C1' 2BA sing 9 n n 
C3' O3' 2BA sing 10 n n 
C3' C2' 2BA sing 11 n n 
O3' P1 2BA sing 12 n n 
C2' O2' 2BA sing 13 n n 
C2' C1' 2BA sing 14 n n 
C1' N9 2BA sing 15 n n 
N9 C8 2BA sing 16 n y 
N9 C4 2BA sing 17 n y 
C8 N7 2BA doub 18 n y 
N7 C5 2BA sing 19 n y 
C5 C6 2BA doub 20 n y 
C5 C4 2BA sing 21 n y 
C6 N6 2BA sing 22 n n 
C6 N1 2BA sing 23 n y 
N1 C2 2BA doub 24 n y 
C2 N3 2BA sing 25 n y 
N3 C4 2BA doub 26 n y 
P1 O1P1 2BA doub 27 n n 
P1 O2P1 2BA sing 28 n n 
P1 "O5'1" 2BA sing 29 n n 
"O5'1" "C5'1" 2BA sing 30 n n 
"C5'1" "C4'1" 2BA sing 31 n n 
"C4'1" "O4'1" 2BA sing 32 n n 
"C4'1" "C3'1" 2BA sing 33 n n 
"O4'1" "C1'1" 2BA sing 34 n n 
"C3'1" "O3'1" 2BA sing 35 n n 
"C3'1" "C2'1" 2BA sing 36 n n 
"C2'1" "O2'1" 2BA sing 37 n n 
"C2'1" "C1'1" 2BA sing 38 n n 
"C1'1" N91 2BA sing 39 n n 
N91 C81 2BA sing 40 n y 
N91 C41 2BA sing 41 n y 
C81 N71 2BA doub 42 n y 
N71 C51 2BA sing 43 n y 
C51 C61 2BA doub 44 n y 
C51 C41 2BA sing 45 n y 
C61 N61 2BA sing 46 n n 
C61 N11 2BA sing 47 n y 
N11 C21 2BA doub 48 n y 
C21 N31 2BA sing 49 n y 
N31 C41 2BA doub 50 n y 
C5' H5' 2BA sing 51 n n 
C5' "H5'A" 2BA sing 52 n n 
C4' H4' 2BA sing 53 n n 
C3' H3' 2BA sing 54 n n 
C2' H2' 2BA sing 55 n n 
O2' HO2' 2BA sing 56 n n 
C1' H1' 2BA sing 57 n n 
C8 H8 2BA sing 58 n n 
N6 HN6 2BA sing 59 n n 
N6 HN6A 2BA sing 60 n n 
C2 H2 2BA sing 61 n n 
"C5'1" HC5' 2BA sing 62 n n 
"C5'1" HC5A 2BA sing 63 n n 
"C4'1" HC4' 2BA sing 64 n n 
"C3'1" HC3' 2BA sing 65 n n 
"C2'1" HC2' 2BA sing 66 n n 
"O2'1" HO2A 2BA sing 67 n n 
"C1'1" HC1' 2BA sing 68 n n 
C81 HC8 2BA sing 69 n n 
N61 H1N6 2BA sing 70 n n 
N61 H1NA 2BA sing 71 n n 
C21 HC2 2BA sing 72 n n 
O2P H2P 2BA sing 73 n n 
O2P1 H2OP 2BA sing 74 n n 
#
_atom_sites.entry_id                     6A03 
_atom_sites.fract_transf_matrix[1][1]    0.019795 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.012429 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.009846 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 SO4 A 1 401 1 SO4 SO4 . 
D 3 2BA B 1 401 358 2BA 2BA . 
E 4 HOH A 1 501 18 HOH HOH . 
E 4 HOH A 2 502 44 HOH HOH . 
E 4 HOH A 3 503 57 HOH HOH . 
E 4 HOH A 4 504 51 HOH HOH . 
E 4 HOH A 5 505 23 HOH HOH . 
E 4 HOH A 6 506 19 HOH HOH . 
E 4 HOH A 7 507 65 HOH HOH . 
E 4 HOH A 8 508 17 HOH HOH . 
E 4 HOH A 9 509 29 HOH HOH . 
E 4 HOH A 10 510 62 HOH HOH . 
E 4 HOH A 11 511 1 HOH HOH . 
E 4 HOH A 12 512 58 HOH HOH . 
E 4 HOH A 13 513 54 HOH HOH . 
E 4 HOH A 14 514 38 HOH HOH . 
E 4 HOH A 15 515 7 HOH HOH . 
E 4 HOH A 16 516 11 HOH HOH . 
E 4 HOH A 17 517 63 HOH HOH . 
E 4 HOH A 18 518 35 HOH HOH . 
E 4 HOH A 19 519 66 HOH HOH . 
E 4 HOH A 20 520 42 HOH HOH . 
E 4 HOH A 21 521 30 HOH HOH . 
E 4 HOH A 22 522 27 HOH HOH . 
E 4 HOH A 23 523 33 HOH HOH . 
E 4 HOH A 24 524 50 HOH HOH . 
E 4 HOH A 25 525 34 HOH HOH . 
E 4 HOH A 26 526 61 HOH HOH . 
E 4 HOH A 27 527 48 HOH HOH . 
F 4 HOH B 1 501 37 HOH HOH . 
F 4 HOH B 2 502 12 HOH HOH . 
F 4 HOH B 3 503 49 HOH HOH . 
F 4 HOH B 4 504 3 HOH HOH . 
F 4 HOH B 5 505 25 HOH HOH . 
F 4 HOH B 6 506 4 HOH HOH . 
F 4 HOH B 7 507 16 HOH HOH . 
F 4 HOH B 8 508 64 HOH HOH . 
F 4 HOH B 9 509 22 HOH HOH . 
F 4 HOH B 10 510 9 HOH HOH . 
F 4 HOH B 11 511 53 HOH HOH . 
F 4 HOH B 12 512 13 HOH HOH . 
F 4 HOH B 13 513 20 HOH HOH . 
F 4 HOH B 14 514 21 HOH HOH . 
F 4 HOH B 15 515 43 HOH HOH . 
F 4 HOH B 16 516 2 HOH HOH . 
F 4 HOH B 17 517 72 HOH HOH . 
F 4 HOH B 18 518 14 HOH HOH . 
F 4 HOH B 19 519 45 HOH HOH . 
F 4 HOH B 20 520 32 HOH HOH . 
F 4 HOH B 21 521 26 HOH HOH . 
F 4 HOH B 22 522 56 HOH HOH . 
F 4 HOH B 23 523 59 HOH HOH . 
F 4 HOH B 24 524 8 HOH HOH . 
F 4 HOH B 25 525 10 HOH HOH . 
F 4 HOH B 26 526 6 HOH HOH . 
F 4 HOH B 27 527 77 HOH HOH . 
F 4 HOH B 28 528 69 HOH HOH . 
F 4 HOH B 29 529 40 HOH HOH . 
F 4 HOH B 30 530 28 HOH HOH . 
F 4 HOH B 31 531 39 HOH HOH . 
F 4 HOH B 32 532 67 HOH HOH . 
F 4 HOH B 33 533 47 HOH HOH . 
F 4 HOH B 34 534 78 HOH HOH . 
F 4 HOH B 35 535 31 HOH HOH . 
F 4 HOH B 36 536 52 HOH HOH . 
F 4 HOH B 37 537 15 HOH HOH . 
F 4 HOH B 38 538 36 HOH HOH . 
F 4 HOH B 39 539 76 HOH HOH . 
F 4 HOH B 40 540 41 HOH HOH . 
F 4 HOH B 41 541 60 HOH HOH . 
F 4 HOH B 42 542 73 HOH HOH . 
F 4 HOH B 43 543 74 HOH HOH . 
F 4 HOH B 44 544 24 HOH HOH . 
F 4 HOH B 45 545 5 HOH HOH . 
F 4 HOH B 46 546 46 HOH HOH . 
F 4 HOH B 47 547 75 HOH HOH . 
F 4 HOH B 48 548 79 HOH HOH . 
F 4 HOH B 49 549 70 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P P 2BA . . . D 3 -8.163 4.893 15.263 1 34.03 ? P 2BA 401 B 1 
HETATM 2 O O1P 2BA . . . D 3 -8.661 5.9 16.275 1 32.52 ? O1P 2BA 401 B 1 
HETATM 3 O O2P 2BA . . . D 3 -6.671 4.74 15.06 1 28.21 ? O2P 2BA 401 B 1 
HETATM 4 O O5' 2BA . . . D 3 -8.832 5.187 13.827 1 29.74 ? O5' 2BA 401 B 1 
HETATM 5 C C5' 2BA . . . D 3 -10.173 5.667 13.746 1 29.56 ? C5' 2BA 401 B 1 
HETATM 6 C C4' 2BA . . . D 3 -10.634 5.723 12.295 1 25.33 ? C4' 2BA 401 B 1 
HETATM 7 O O4' 2BA . . . D 3 -9.851 6.697 11.598 1 21.76 ? O4' 2BA 401 B 1 
HETATM 8 C C3' 2BA . . . D 3 -10.427 4.427 11.53 1 25.88 ? C3' 2BA 401 B 1 
HETATM 9 O O3' 2BA . . . D 3 -11.579 3.599 11.471 1 30.39 ? O3' 2BA 401 B 1 
HETATM 10 C C2' 2BA . . . D 3 -10.147 4.877 10.12 1 24.75 ? C2' 2BA 401 B 1 
HETATM 11 O O2' 2BA . . . D 3 -11.391 4.988 9.426 1 26.98 ? O2' 2BA 401 B 1 
HETATM 12 C C1' 2BA . . . D 3 -9.545 6.251 10.274 1 24.64 ? C1' 2BA 401 B 1 
HETATM 13 N N9 2BA . . . D 3 -8.086 6.04 10.143 1 27.29 ? N9 2BA 401 B 1 
HETATM 14 C C8 2BA . . . D 3 -7.178 6.086 11.136 1 27.72 ? C8 2BA 401 B 1 
HETATM 15 N N7 2BA . . . D 3 -5.93 5.829 10.665 1 30.67 ? N7 2BA 401 B 1 
HETATM 16 C C5 2BA . . . D 3 -6.035 5.608 9.341 1 30.68 ? C5 2BA 401 B 1 
HETATM 17 C C6 2BA . . . D 3 -5.108 5.281 8.231 1 30.62 ? C6 2BA 401 B 1 
HETATM 18 N N6 2BA . . . D 3 -3.779 5.136 8.443 1 30.8 ? N6 2BA 401 B 1 
HETATM 19 N N1 2BA . . . D 3 -5.636 5.129 6.998 1 30.14 ? N1 2BA 401 B 1 
HETATM 20 C C2 2BA . . . D 3 -6.954 5.27 6.767 1 26.38 ? C2 2BA 401 B 1 
HETATM 21 N N3 2BA . . . D 3 -7.85 5.566 7.722 1 24.85 ? N3 2BA 401 B 1 
HETATM 22 C C4 2BA . . . D 3 -7.46 5.741 9.005 1 25.47 ? C4 2BA 401 B 1 
HETATM 23 P P1 2BA . . . D 3 -11.364 2.01 11.547 1 26.37 ? P1 2BA 401 B 1 
HETATM 24 O O1P1 2BA . . . D 3 -12.654 1.318 11.204 1 34.38 ? O1P1 2BA 401 B 1 
HETATM 25 O O2P1 2BA . . . D 3 -10.123 1.648 10.762 1 21.96 ? O2P1 2BA 401 B 1 
HETATM 26 O "O5'1" 2BA . . . D 3 -11.036 1.774 13.104 1 34.13 ? "O5'1" 2BA 401 B 1 
HETATM 27 C "C5'1" 2BA . . . D 3 -9.865 1.026 13.38 1 27.75 ? "C5'1" 2BA 401 B 1 
HETATM 28 C "C4'1" 2BA . . . D 3 -9.301 1.171 14.783 1 24.85 ? "C4'1" 2BA 401 B 1 
HETATM 29 O "O4'1" 2BA . . . D 3 -8.562 -0.035 15 1 27.42 ? "O4'1" 2BA 401 B 1 
HETATM 30 C "C3'1" 2BA . . . D 3 -8.287 2.302 14.909 1 27.54 ? "C3'1" 2BA 401 B 1 
HETATM 31 O "O3'1" 2BA . . . D 3 -8.778 3.443 15.607 1 28.03 ? "O3'1" 2BA 401 B 1 
HETATM 32 C "C2'1" 2BA . . . D 3 -7.122 1.682 15.645 1 29.33 ? "C2'1" 2BA 401 B 1 
HETATM 33 O "O2'1" 2BA . . . D 3 -7.359 1.769 17.053 1 31.09 ? "O2'1" 2BA 401 B 1 
HETATM 34 C "C1'1" 2BA . . . D 3 -7.176 0.239 15.208 1 23.72 ? "C1'1" 2BA 401 B 1 
HETATM 35 N N91 2BA . . . D 3 -6.414 0.178 13.927 1 30.18 ? N91 2BA 401 B 1 
HETATM 36 C C81 2BA . . . D 3 -6.906 0.134 12.67 1 27.79 ? C81 2BA 401 B 1 
HETATM 37 N N71 2BA . . . D 3 -5.928 0.104 11.736 1 24.34 ? N71 2BA 401 B 1 
HETATM 38 C C51 2BA . . . D 3 -4.758 0.127 12.396 1 32.31 ? C51 2BA 401 B 1 
HETATM 39 C C61 2BA . . . D 3 -3.323 0.112 12.027 1 28.92 ? C61 2BA 401 B 1 
HETATM 40 N N61 2BA . . . D 3 -2.922 0.065 10.737 1 30.81 ? N61 2BA 401 B 1 
HETATM 41 N N11 2BA . . . D 3 -2.423 0.149 13.033 1 40.69 ? N11 2BA 401 B 1 
HETATM 42 C C21 2BA . . . D 3 -2.803 0.198 14.324 1 36.01 ? C21 2BA 401 B 1 
HETATM 43 N N31 2BA . . . D 3 -4.08 0.211 14.73 1 28.14 ? N31 2BA 401 B 1 
HETATM 44 C C41 2BA . . . D 3 -5.085 0.179 13.832 1 32.42 ? C41 2BA 401 B 1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    8 
_model_server_stats.query_time_ms           257 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           44 
#