data_6A0C
#
_model_server_result.job_id            ZwOE1C8I_BSurjknhrJp6A 
_model_server_result.datetime_utc      '2024-10-10 22:31:30' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6a0c 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":101}' 
#
_entry.id    6A0C 
#
_exptl.entry_id    6A0C 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              62.068 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-ETHANEDIOL 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          101.62 
_cell.angle_gamma         90 
_cell.entry_id            6A0C 
_cell.length_a            38.835 
_cell.length_b            14.133 
_cell.length_c            57.92 
_cell.Z_PDB               6 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6A0C 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    trimeric 
_pdbx_struct_assembly.oligomeric_count      3 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A C PRO 1 A PRO 1 1_555 A N HYP 2 A HYP 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? 
covale ? covale2 A C HYP 2 A HYP 2 1_555 A N GLY 3 A GLY 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? 
covale ? covale3 A C PRO 4 A PRO 4 1_555 A N HYP 5 A HYP 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? 
covale ? covale4 A C HYP 5 A HYP 5 1_555 A N GLY 6 A GLY 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? 
covale ? covale5 A C PRO 7 A PRO 7 1_555 A N HYP 8 A HYP 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? 
covale ? covale6 A C HYP 8 A HYP 8 1_555 A N GLY 9 A GLY 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? 
covale ? covale7 A C PRO 22 A PRO 22 1_555 A N HYP 23 A HYP 23 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? 
covale ? covale8 A C HYP 23 A HYP 23 1_555 A N GLY 24 A GLY 24 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? 
covale ? covale9 A C PRO 25 A PRO 25 1_555 A N HYP 26 A HYP 26 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.323 ? 
covale ? covale10 A C HYP 26 A HYP 26 1_555 A N GLY 27 A GLY 27 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? 
covale ? covale11 A C PRO 28 A PRO 28 1_555 A N HYP 29 A HYP 29 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? 
covale ? covale12 A C HYP 29 A HYP 29 1_555 A N GLY 30 A GLY 30 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
covale ? covale13 A CA GLY 30 A GLY 30 1_555 E C1 GOL . A GOL 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.491 ? 
covale ? covale14 B C PRO 1 B PRO 1 1_555 B N HYP 2 B HYP 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.323 ? 
covale ? covale15 B C HYP 2 B HYP 2 1_555 B N GLY 3 B GLY 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? 
covale ? covale16 B C PRO 4 B PRO 4 1_555 B N HYP 5 B HYP 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? 
covale ? covale17 B C HYP 5 B HYP 5 1_555 B N GLY 6 B GLY 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? 
covale ? covale18 B C PRO 7 B PRO 7 1_555 B N HYP 8 B HYP 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? 
covale ? covale19 B C HYP 8 B HYP 8 1_555 B N GLY 9 B GLY 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? 
covale ? covale20 B C PRO 22 B PRO 22 1_555 B N HYP 23 B HYP 23 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.322 ? 
covale ? covale21 B C HYP 23 B HYP 23 1_555 B N GLY 24 B GLY 24 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? 
covale ? covale22 B C PRO 25 B PRO 25 1_555 B N HYP 26 B HYP 26 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.32 ? 
covale ? covale23 B C HYP 26 B HYP 26 1_555 B N GLY 27 B GLY 27 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
covale ? covale24 B C PRO 28 B PRO 28 1_555 B N HYP 29 B HYP 29 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.323 ? 
covale ? covale25 C C PRO 1 C PRO 1 1_555 C N HYP 2 C HYP 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? 
covale ? covale26 C C HYP 2 C HYP 2 1_555 C N GLY 3 C GLY 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? 
covale ? covale27 C C PRO 4 C PRO 4 1_555 C N HYP 5 C HYP 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? 
covale ? covale28 C C HYP 5 C HYP 5 1_555 C N GLY 6 C GLY 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? 
covale ? covale29 C C PRO 7 C PRO 7 1_555 C N HYP 8 C HYP 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? 
covale ? covale30 C C HYP 8 C HYP 8 1_555 C N GLY 9 C GLY 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? 
covale ? covale31 C C PRO 22 C PRO 22 1_555 C N HYP 23 C HYP 23 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? 
covale ? covale32 C C HYP 23 C HYP 23 1_555 C N GLY 24 C GLY 24 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? 
covale ? covale33 C C PRO 25 C PRO 25 1_555 C N HYP 26 C HYP 26 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
covale ? covale34 C C HYP 26 C HYP 26 1_555 C N GLY 27 C GLY 27 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
covale ? covale35 C C PRO 28 C PRO 28 1_555 C N HYP 29 C HYP 29 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? 
covale ? covale36 C C HYP 29 C HYP 29 1_555 C N GLY 30 C GLY 30 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? 
#
_chem_comp.formula           'C2 H6 O2' 
_chem_comp.formula_weight    62.068 
_chem_comp.id                EDO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-ETHANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'ETHYLENE GLYCOL' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 EDO sing 55 n n 
C1 C2 EDO sing 56 n n 
C1 H11 EDO sing 57 n n 
C1 H12 EDO sing 58 n n 
O1 HO1 EDO sing 59 n n 
C2 O2 EDO sing 60 n n 
C2 H21 EDO sing 61 n n 
C2 H22 EDO sing 62 n n 
O2 HO2 EDO sing 63 n n 
#
_atom_sites.entry_id                     6A0C 
_atom_sites.fract_transf_matrix[1][1]    0.02575 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.005293 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.070756 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.017626 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 2 EDO A 1 101 151 EDO EDO . 
E 3 GOL A 1 102 161 GOL GOL . 
F 4 HOH A 1 201 62 HOH HOH . 
F 4 HOH A 2 202 78 HOH HOH . 
F 4 HOH A 3 203 31 HOH HOH . 
F 4 HOH A 4 204 56 HOH HOH . 
F 4 HOH A 5 205 73 HOH HOH . 
F 4 HOH A 6 206 15 HOH HOH . 
F 4 HOH A 7 207 1 HOH HOH . 
F 4 HOH A 8 208 83 HOH HOH . 
F 4 HOH A 9 209 26 HOH HOH . 
F 4 HOH A 10 210 7 HOH HOH . 
F 4 HOH A 11 211 108 HOH HOH . 
F 4 HOH A 12 212 36 HOH HOH . 
F 4 HOH A 13 213 6 HOH HOH . 
F 4 HOH A 14 214 5 HOH HOH . 
F 4 HOH A 15 215 52 HOH HOH . 
F 4 HOH A 16 216 21 HOH HOH . 
F 4 HOH A 17 217 20 HOH HOH . 
F 4 HOH A 18 218 46 HOH HOH . 
F 4 HOH A 19 219 101 HOH HOH . 
F 4 HOH A 20 220 11 HOH HOH . 
F 4 HOH A 21 221 2 HOH HOH . 
F 4 HOH A 22 222 24 HOH HOH . 
F 4 HOH A 23 223 43 HOH HOH . 
F 4 HOH A 24 224 10 HOH HOH . 
F 4 HOH A 25 225 58 HOH HOH . 
F 4 HOH A 26 226 9 HOH HOH . 
F 4 HOH A 27 227 60 HOH HOH . 
F 4 HOH A 28 228 71 HOH HOH . 
F 4 HOH A 29 229 105 HOH HOH . 
F 4 HOH A 30 230 107 HOH HOH . 
F 4 HOH A 31 231 17 HOH HOH . 
F 4 HOH A 32 232 64 HOH HOH . 
F 4 HOH A 33 233 89 HOH HOH . 
F 4 HOH A 34 234 84 HOH HOH . 
F 4 HOH A 35 235 68 HOH HOH . 
F 4 HOH A 36 236 4 HOH HOH . 
G 4 HOH B 1 101 88 HOH HOH . 
G 4 HOH B 2 102 115 HOH HOH . 
G 4 HOH B 3 103 79 HOH HOH . 
G 4 HOH B 4 104 70 HOH HOH . 
G 4 HOH B 5 105 44 HOH HOH . 
G 4 HOH B 6 106 97 HOH HOH . 
G 4 HOH B 7 107 18 HOH HOH . 
G 4 HOH B 8 108 69 HOH HOH . 
G 4 HOH B 9 109 47 HOH HOH . 
G 4 HOH B 10 110 50 HOH HOH . 
G 4 HOH B 11 111 59 HOH HOH . 
G 4 HOH B 12 112 35 HOH HOH . 
G 4 HOH B 13 113 104 HOH HOH . 
G 4 HOH B 14 114 86 HOH HOH . 
G 4 HOH B 15 115 30 HOH HOH . 
G 4 HOH B 16 116 48 HOH HOH . 
G 4 HOH B 17 117 51 HOH HOH . 
G 4 HOH B 18 118 13 HOH HOH . 
G 4 HOH B 19 119 72 HOH HOH . 
G 4 HOH B 20 120 16 HOH HOH . 
G 4 HOH B 21 121 102 HOH HOH . 
G 4 HOH B 22 122 34 HOH HOH . 
G 4 HOH B 23 123 33 HOH HOH . 
G 4 HOH B 24 124 55 HOH HOH . 
G 4 HOH B 25 125 29 HOH HOH . 
G 4 HOH B 26 126 94 HOH HOH . 
G 4 HOH B 27 127 85 HOH HOH . 
G 4 HOH B 28 128 74 HOH HOH . 
G 4 HOH B 29 129 63 HOH HOH . 
G 4 HOH B 30 130 87 HOH HOH . 
G 4 HOH B 31 131 80 HOH HOH . 
G 4 HOH B 32 132 27 HOH HOH . 
G 4 HOH B 33 133 81 HOH HOH . 
G 4 HOH B 34 134 112 HOH HOH . 
G 4 HOH B 35 135 66 HOH HOH . 
G 4 HOH B 36 136 76 HOH HOH . 
G 4 HOH B 37 137 110 HOH HOH . 
G 4 HOH B 38 138 93 HOH HOH . 
G 4 HOH B 39 139 111 HOH HOH . 
G 4 HOH B 40 140 106 HOH HOH . 
G 4 HOH B 41 141 90 HOH HOH . 
H 4 HOH C 1 101 54 HOH HOH . 
H 4 HOH C 2 102 38 HOH HOH . 
H 4 HOH C 3 103 53 HOH HOH . 
H 4 HOH C 4 104 92 HOH HOH . 
H 4 HOH C 5 105 95 HOH HOH . 
H 4 HOH C 6 106 57 HOH HOH . 
H 4 HOH C 7 107 32 HOH HOH . 
H 4 HOH C 8 108 8 HOH HOH . 
H 4 HOH C 9 109 25 HOH HOH . 
H 4 HOH C 10 110 3 HOH HOH . 
H 4 HOH C 11 111 99 HOH HOH . 
H 4 HOH C 12 112 37 HOH HOH . 
H 4 HOH C 13 113 75 HOH HOH . 
H 4 HOH C 14 114 23 HOH HOH . 
H 4 HOH C 15 115 49 HOH HOH . 
H 4 HOH C 16 116 42 HOH HOH . 
H 4 HOH C 17 117 61 HOH HOH . 
H 4 HOH C 18 118 28 HOH HOH . 
H 4 HOH C 19 119 77 HOH HOH . 
H 4 HOH C 20 120 22 HOH HOH . 
H 4 HOH C 21 121 12 HOH HOH . 
H 4 HOH C 22 122 39 HOH HOH . 
H 4 HOH C 23 123 41 HOH HOH . 
H 4 HOH C 24 124 45 HOH HOH . 
H 4 HOH C 25 125 14 HOH HOH . 
H 4 HOH C 26 126 98 HOH HOH . 
H 4 HOH C 27 127 91 HOH HOH . 
H 4 HOH C 28 128 65 HOH HOH . 
H 4 HOH C 29 129 109 HOH HOH . 
H 4 HOH C 30 130 19 HOH HOH . 
H 4 HOH C 31 131 100 HOH HOH . 
H 4 HOH C 32 132 113 HOH HOH . 
H 4 HOH C 33 133 40 HOH HOH . 
H 4 HOH C 34 134 67 HOH HOH . 
H 4 HOH C 35 135 114 HOH HOH . 
H 4 HOH C 36 136 82 HOH HOH . 
H 4 HOH C 37 137 103 HOH HOH . 
H 4 HOH C 38 138 96 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 EDO . . . D 2 18.78 3.149 36.122 1 32.58 ? C1 EDO 101 A 1 
HETATM 2 O O1 EDO . . . D 2 18.014 2.84 37.294 1 32.05 ? O1 EDO 101 A 1 
HETATM 3 C C2 EDO . . . D 2 19.243 4.59 36.235 1 35.8 ? C2 EDO 101 A 1 
HETATM 4 O O2 EDO . . . D 2 20.551 4.821 35.704 1 38.22 ? O2 EDO 101 A 1 
#
_model_server_stats.io_time_ms              48 
_model_server_stats.parse_time_ms           16 
_model_server_stats.create_model_time_ms    2 
_model_server_stats.query_time_ms           257 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           4 
#