data_6A2P # _model_server_result.job_id D3ZXJdUdsuSuWuej4xeXbg _model_server_result.datetime_utc '2024-11-13 03:45:28' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6a2p # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":701}' # _entry.id 6A2P # _exptl.entry_id 6A2P _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 500.595 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "5,5'-[propane-1,3-diylbis(oxy-4,1-phenylene)]bis(6-ethylpyrimidine-2,4-diamine)" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6A2P _cell.length_a 59.243 _cell.length_b 158.9 _cell.length_c 167.6 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6A2P _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 F N N # _chem_comp.formula 'C27 H32 N8 O2' _chem_comp.formula_weight 500.595 _chem_comp.id 9RR _chem_comp.mon_nstd_flag . _chem_comp.name "5,5'-[propane-1,3-diylbis(oxy-4,1-phenylene)]bis(6-ethylpyrimidine-2,4-diamine)" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N37 C31 9RR sing 1 n n C31 N32 9RR doub 2 n y C31 N30 9RR sing 3 n y N32 C33 9RR sing 4 n y N30 C29 9RR doub 5 n y C35 C34 9RR sing 6 n n C33 C34 9RR sing 7 n n C33 C28 9RR doub 8 n y C29 C28 9RR sing 9 n y C29 N36 9RR sing 10 n n C28 C25 9RR sing 11 n n N7 C2 9RR sing 12 n n C2 N3 9RR doub 13 n y C2 N1 9RR sing 14 n y N3 C4 9RR sing 15 n y C25 C24 9RR doub 16 n y C25 C26 9RR sing 17 n y C10 C9 9RR sing 18 n n N1 C6 9RR doub 19 n y C4 N8 9RR sing 20 n n C4 C5 9RR doub 21 n y C12 C13 9RR doub 22 n y C12 C11 9RR sing 23 n y C24 C23 9RR sing 24 n y C26 C27 9RR doub 25 n y C6 C5 9RR sing 26 n y C6 C9 9RR sing 27 n n C5 C11 9RR sing 28 n n C13 C14 9RR sing 29 n y C11 C16 9RR doub 30 n y C23 C22 9RR doub 31 n y C27 C22 9RR sing 32 n y C14 O17 9RR sing 33 n n C14 C15 9RR doub 34 n y C16 C15 9RR sing 35 n y C22 O21 9RR sing 36 n n O17 C18 9RR sing 37 n n C18 C19 9RR sing 38 n n O21 C20 9RR sing 39 n n C20 C19 9RR sing 40 n n N37 H1 9RR sing 41 n n N37 H2 9RR sing 42 n n N36 H3 9RR sing 43 n n N36 H4 9RR sing 44 n n C34 H5 9RR sing 45 n n C34 H6 9RR sing 46 n n C35 H7 9RR sing 47 n n C35 H8 9RR sing 48 n n C35 H9 9RR sing 49 n n C24 H10 9RR sing 50 n n C23 H11 9RR sing 51 n n C26 H12 9RR sing 52 n n C27 H13 9RR sing 53 n n C20 H14 9RR sing 54 n n C20 H15 9RR sing 55 n n C19 H16 9RR sing 56 n n C19 H17 9RR sing 57 n n C18 H18 9RR sing 58 n n C18 H19 9RR sing 59 n n C13 H20 9RR sing 60 n n C12 H21 9RR sing 61 n n C15 H22 9RR sing 62 n n C16 H23 9RR sing 63 n n C9 H24 9RR sing 64 n n C9 H25 9RR sing 65 n n C10 H26 9RR sing 66 n n C10 H27 9RR sing 67 n n C10 H28 9RR sing 68 n n N8 H29 9RR sing 69 n n N8 H30 9RR sing 70 n n N7 H31 9RR sing 71 n n N7 H32 9RR sing 72 n n # _atom_sites.entry_id 6A2P _atom_sites.fract_transf_matrix[1][1] 0.01688 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006293 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005967 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 9RR A 1 701 701 9RR bt3 . D 3 NAP A 1 702 702 NAP NAP . E 4 UMP A 1 703 703 UMP UMP . F 2 9RR B 1 701 701 9RR bt3 . G 4 UMP B 1 702 703 UMP UMP . H 5 HOH A 1 801 147 HOH HOH . H 5 HOH A 2 802 57 HOH HOH . H 5 HOH A 3 803 59 HOH HOH . H 5 HOH A 4 804 94 HOH HOH . H 5 HOH A 5 805 183 HOH HOH . H 5 HOH A 6 806 185 HOH HOH . H 5 HOH A 7 807 61 HOH HOH . H 5 HOH A 8 808 81 HOH HOH . H 5 HOH A 9 809 85 HOH HOH . H 5 HOH A 10 810 18 HOH HOH . H 5 HOH A 11 811 177 HOH HOH . H 5 HOH A 12 812 51 HOH HOH . H 5 HOH A 13 813 17 HOH HOH . H 5 HOH A 14 814 36 HOH HOH . H 5 HOH A 15 815 192 HOH HOH . H 5 HOH A 16 816 87 HOH HOH . H 5 HOH A 17 817 46 HOH HOH . H 5 HOH A 18 818 156 HOH HOH . H 5 HOH A 19 819 68 HOH HOH . H 5 HOH A 20 820 110 HOH HOH . H 5 HOH A 21 821 40 HOH HOH . H 5 HOH A 22 822 137 HOH HOH . H 5 HOH A 23 823 19 HOH HOH . H 5 HOH A 24 824 180 HOH HOH . H 5 HOH A 25 825 30 HOH HOH . H 5 HOH A 26 826 157 HOH HOH . H 5 HOH A 27 827 92 HOH HOH . H 5 HOH A 28 828 9 HOH HOH . H 5 HOH A 29 829 116 HOH HOH . H 5 HOH A 30 830 11 HOH HOH . H 5 HOH A 31 831 77 HOH HOH . H 5 HOH A 32 832 15 HOH HOH . H 5 HOH A 33 833 101 HOH HOH . H 5 HOH A 34 834 108 HOH HOH . H 5 HOH A 35 835 45 HOH HOH . H 5 HOH A 36 836 5 HOH HOH . H 5 HOH A 37 837 113 HOH HOH . H 5 HOH A 38 838 119 HOH HOH . H 5 HOH A 39 839 170 HOH HOH . H 5 HOH A 40 840 39 HOH HOH . H 5 HOH A 41 841 83 HOH HOH . H 5 HOH A 42 842 63 HOH HOH . H 5 HOH A 43 843 166 HOH HOH . H 5 HOH A 44 844 146 HOH HOH . H 5 HOH A 45 845 190 HOH HOH . H 5 HOH A 46 846 67 HOH HOH . H 5 HOH A 47 847 121 HOH HOH . H 5 HOH A 48 848 142 HOH HOH . H 5 HOH A 49 849 175 HOH HOH . H 5 HOH A 50 850 47 HOH HOH . H 5 HOH A 51 851 163 HOH HOH . H 5 HOH A 52 852 128 HOH HOH . H 5 HOH A 53 853 96 HOH HOH . H 5 HOH A 54 854 178 HOH HOH . H 5 HOH A 55 855 120 HOH HOH . H 5 HOH A 56 856 65 HOH HOH . H 5 HOH A 57 857 144 HOH HOH . H 5 HOH A 58 858 70 HOH HOH . H 5 HOH A 59 859 138 HOH HOH . H 5 HOH A 60 860 50 HOH HOH . H 5 HOH A 61 861 181 HOH HOH . H 5 HOH A 62 862 79 HOH HOH . H 5 HOH A 63 863 86 HOH HOH . H 5 HOH A 64 864 172 HOH HOH . H 5 HOH A 65 865 162 HOH HOH . H 5 HOH A 66 866 129 HOH HOH . H 5 HOH A 67 867 29 HOH HOH . H 5 HOH A 68 868 93 HOH HOH . H 5 HOH A 69 869 14 HOH HOH . H 5 HOH A 70 870 4 HOH HOH . H 5 HOH A 71 871 7 HOH HOH . H 5 HOH A 72 872 174 HOH HOH . H 5 HOH A 73 873 114 HOH HOH . H 5 HOH A 74 874 104 HOH HOH . H 5 HOH A 75 875 6 HOH HOH . H 5 HOH A 76 876 135 HOH HOH . H 5 HOH A 77 877 143 HOH HOH . H 5 HOH A 78 878 98 HOH HOH . H 5 HOH A 79 879 130 HOH HOH . H 5 HOH A 80 880 41 HOH HOH . H 5 HOH A 81 881 76 HOH HOH . H 5 HOH A 82 882 82 HOH HOH . H 5 HOH A 83 883 122 HOH HOH . H 5 HOH A 84 884 10 HOH HOH . H 5 HOH A 85 885 22 HOH HOH . H 5 HOH A 86 886 168 HOH HOH . H 5 HOH A 87 887 49 HOH HOH . H 5 HOH A 88 888 31 HOH HOH . H 5 HOH A 89 889 197 HOH HOH . H 5 HOH A 90 890 71 HOH HOH . H 5 HOH A 91 891 176 HOH HOH . H 5 HOH A 92 892 106 HOH HOH . H 5 HOH A 93 893 107 HOH HOH . H 5 HOH A 94 894 25 HOH HOH . H 5 HOH A 95 895 198 HOH HOH . H 5 HOH A 96 896 33 HOH HOH . H 5 HOH A 97 897 2 HOH HOH . H 5 HOH A 98 898 78 HOH HOH . H 5 HOH A 99 899 184 HOH HOH . H 5 HOH A 100 900 74 HOH HOH . I 5 HOH B 1 801 165 HOH HOH . I 5 HOH B 2 802 55 HOH HOH . I 5 HOH B 3 803 164 HOH HOH . I 5 HOH B 4 804 186 HOH HOH . I 5 HOH B 5 805 95 HOH HOH . I 5 HOH B 6 806 23 HOH HOH . I 5 HOH B 7 807 35 HOH HOH . I 5 HOH B 8 808 127 HOH HOH . I 5 HOH B 9 809 84 HOH HOH . I 5 HOH B 10 810 171 HOH HOH . I 5 HOH B 11 811 44 HOH HOH . I 5 HOH B 12 812 3 HOH HOH . I 5 HOH B 13 813 188 HOH HOH . I 5 HOH B 14 814 24 HOH HOH . I 5 HOH B 15 815 195 HOH HOH . I 5 HOH B 16 816 158 HOH HOH . I 5 HOH B 17 817 139 HOH HOH . I 5 HOH B 18 818 160 HOH HOH . I 5 HOH B 19 819 26 HOH HOH . I 5 HOH B 20 820 73 HOH HOH . I 5 HOH B 21 821 99 HOH HOH . I 5 HOH B 22 822 13 HOH HOH . I 5 HOH B 23 823 151 HOH HOH . I 5 HOH B 24 824 132 HOH HOH . I 5 HOH B 25 825 155 HOH HOH . I 5 HOH B 26 826 150 HOH HOH . I 5 HOH B 27 827 131 HOH HOH . I 5 HOH B 28 828 12 HOH HOH . I 5 HOH B 29 829 56 HOH HOH . I 5 HOH B 30 830 159 HOH HOH . I 5 HOH B 31 831 43 HOH HOH . I 5 HOH B 32 832 169 HOH HOH . I 5 HOH B 33 833 58 HOH HOH . I 5 HOH B 34 834 69 HOH HOH . I 5 HOH B 35 835 60 HOH HOH . I 5 HOH B 36 836 111 HOH HOH . I 5 HOH B 37 837 80 HOH HOH . I 5 HOH B 38 838 189 HOH HOH . I 5 HOH B 39 839 75 HOH HOH . I 5 HOH B 40 840 89 HOH HOH . I 5 HOH B 41 841 112 HOH HOH . I 5 HOH B 42 842 109 HOH HOH . I 5 HOH B 43 843 133 HOH HOH . I 5 HOH B 44 844 54 HOH HOH . I 5 HOH B 45 845 103 HOH HOH . I 5 HOH B 46 846 179 HOH HOH . I 5 HOH B 47 847 126 HOH HOH . I 5 HOH B 48 848 173 HOH HOH . I 5 HOH B 49 849 66 HOH HOH . I 5 HOH B 50 850 64 HOH HOH . I 5 HOH B 51 851 148 HOH HOH . I 5 HOH B 52 852 141 HOH HOH . I 5 HOH B 53 853 187 HOH HOH . I 5 HOH B 54 854 42 HOH HOH . I 5 HOH B 55 855 90 HOH HOH . I 5 HOH B 56 856 20 HOH HOH . I 5 HOH B 57 857 191 HOH HOH . I 5 HOH B 58 858 34 HOH HOH . I 5 HOH B 59 859 194 HOH HOH . I 5 HOH B 60 860 161 HOH HOH . I 5 HOH B 61 861 37 HOH HOH . I 5 HOH B 62 862 118 HOH HOH . I 5 HOH B 63 863 27 HOH HOH . I 5 HOH B 64 864 134 HOH HOH . I 5 HOH B 65 865 145 HOH HOH . I 5 HOH B 66 866 28 HOH HOH . I 5 HOH B 67 867 124 HOH HOH . I 5 HOH B 68 868 48 HOH HOH . I 5 HOH B 69 869 100 HOH HOH . I 5 HOH B 70 870 72 HOH HOH . I 5 HOH B 71 871 91 HOH HOH . I 5 HOH B 72 872 32 HOH HOH . I 5 HOH B 73 873 136 HOH HOH . I 5 HOH B 74 874 38 HOH HOH . I 5 HOH B 75 875 125 HOH HOH . I 5 HOH B 76 876 123 HOH HOH . I 5 HOH B 77 877 193 HOH HOH . I 5 HOH B 78 878 52 HOH HOH . I 5 HOH B 79 879 21 HOH HOH . I 5 HOH B 80 880 182 HOH HOH . I 5 HOH B 81 881 16 HOH HOH . I 5 HOH B 82 882 97 HOH HOH . I 5 HOH B 83 883 115 HOH HOH . I 5 HOH B 84 884 117 HOH HOH . I 5 HOH B 85 885 154 HOH HOH . I 5 HOH B 86 886 8 HOH HOH . I 5 HOH B 87 887 105 HOH HOH . I 5 HOH B 88 888 88 HOH HOH . I 5 HOH B 89 889 62 HOH HOH . I 5 HOH B 90 890 167 HOH HOH . I 5 HOH B 91 891 140 HOH HOH . I 5 HOH B 92 892 1 HOH HOH . I 5 HOH B 93 893 53 HOH HOH . I 5 HOH B 94 894 102 HOH HOH . I 5 HOH B 95 895 149 HOH HOH . I 5 HOH B 96 896 196 HOH HOH . I 5 HOH B 97 897 152 HOH HOH . I 5 HOH B 98 898 153 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N37 9RR . . . F 2 26.333 -24.382 10.442 1 66.9 ? N37 9RR 701 B 1 HETATM 2 C C31 9RR . . . F 2 26.545 -25.533 9.806 1 75.54 ? C31 9RR 701 B 1 HETATM 3 N N30 9RR . . . F 2 25.764 -26.548 10.128 1 63.24 ? N30 9RR 701 B 1 HETATM 4 C C29 9RR . . . F 2 25.903 -27.725 9.543 1 66.38 ? C29 9RR 701 B 1 HETATM 5 N N36 9RR . . . F 2 25.101 -28.732 9.878 1 67.82 ? N36 9RR 701 B 1 HETATM 6 N N32 9RR . . . F 2 27.514 -25.623 8.885 1 73.6 ? N32 9RR 701 B 1 HETATM 7 C C33 9RR . . . F 2 27.758 -26.754 8.219 1 65.54 ? C33 9RR 701 B 1 HETATM 8 C C34 9RR . . . F 2 28.844 -26.815 7.188 1 61.51 ? C34 9RR 701 B 1 HETATM 9 C C35 9RR . . . F 2 30.192 -26.913 7.84 1 62.28 ? C35 9RR 701 B 1 HETATM 10 C C28 9RR . . . F 2 26.935 -27.923 8.543 1 76.64 ? C28 9RR 701 B 1 HETATM 11 C C25 9RR . . . F 2 27.037 -29.239 7.877 1 87.2 ? C25 9RR 701 B 1 HETATM 12 C C24 9RR . . . F 2 25.903 -29.607 7.203 1 92.13 ? C24 9RR 701 B 1 HETATM 13 C C23 9RR . . . F 2 25.841 -30.797 6.529 1 104.3 ? C23 9RR 701 B 1 HETATM 14 C C26 9RR . . . F 2 28.136 -30.084 7.874 1 82.47 ? C26 9RR 701 B 1 HETATM 15 C C27 9RR . . . F 2 28.074 -31.289 7.188 1 84.9 ? C27 9RR 701 B 1 HETATM 16 C C22 9RR . . . F 2 26.922 -31.638 6.51 1 93.25 ? C22 9RR 701 B 1 HETATM 17 O O21 9RR . . . F 2 26.764 -32.803 5.828 1 91.67 ? O21 9RR 701 B 1 HETATM 18 C C20 9RR . . . F 2 27.664 -33.26 4.844 1 103.36 ? C20 9RR 701 B 1 HETATM 19 C C19 9RR . . . F 2 27.75 -32.264 3.724 1 83.58 ? C19 9RR 701 B 1 HETATM 20 C C18 9RR . . . F 2 28.837 -31.311 4.127 1 84.99 ? C18 9RR 701 B 1 HETATM 21 O O17 9RR . . . F 2 29.919 -31.562 3.272 1 97.11 ? O17 9RR 701 B 1 HETATM 22 C C14 9RR . . . F 2 31.147 -31.241 3.737 1 98.97 ? C14 9RR 701 B 1 HETATM 23 C C13 9RR . . . F 2 31.264 -30.831 5.039 1 88.67 ? C13 9RR 701 B 1 HETATM 24 C C12 9RR . . . F 2 32.508 -30.51 5.519 1 83.94 ? C12 9RR 701 B 1 HETATM 25 C C15 9RR . . . F 2 32.262 -31.317 2.931 1 100.62 ? C15 9RR 701 B 1 HETATM 26 C C16 9RR . . . F 2 33.509 -30.984 3.421 1 90.7 ? C16 9RR 701 B 1 HETATM 27 C C11 9RR . . . F 2 33.617 -30.588 4.721 1 72.95 ? C11 9RR 701 B 1 HETATM 28 C C5 9RR . . . F 2 34.906 -30.232 5.293 1 64.35 ? C5 9RR 701 B 1 HETATM 29 C C6 9RR . . . F 2 35.277 -30.678 6.622 1 70.06 ? C6 9RR 701 B 1 HETATM 30 C C9 9RR . . . F 2 34.362 -31.544 7.423 1 70.49 ? C9 9RR 701 B 1 HETATM 31 C C10 9RR . . . F 2 33.392 -30.733 8.224 1 82.8 ? C10 9RR 701 B 1 HETATM 32 N N1 9RR . . . F 2 36.467 -30.319 7.09 1 76.91 ? N1 9RR 701 B 1 HETATM 33 C C4 9RR . . . F 2 35.854 -29.41 4.572 1 84.31 ? C4 9RR 701 B 1 HETATM 34 N N8 9RR . . . F 2 35.543 -28.974 3.344 1 87.96 ? N8 9RR 701 B 1 HETATM 35 N N3 9RR . . . F 2 37.014 -29.106 5.151 1 81.01 ? N3 9RR 701 B 1 HETATM 36 C C2 9RR . . . F 2 37.308 -29.558 6.375 1 83.46 ? C2 9RR 701 B 1 HETATM 37 N N7 9RR . . . F 2 38.495 -29.23 6.916 1 91.34 ? N7 9RR 701 B 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 27 _model_server_stats.query_time_ms 257 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 37 #