data_6A2W # _model_server_result.job_id JJJU_mkIFZSWzSJXKHXUDw _model_server_result.datetime_utc '2024-10-18 10:16:37' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6a2w # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"X","auth_seq_id":413}' # _entry.id 6A2W # _exptl.entry_id 6A2W _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 308.434 _entity.id 11 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 'octyl 1-thio-beta-D-glucopyranoside' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6A2W _cell.length_a 47.749 _cell.length_b 115.718 _cell.length_c 141.261 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6A2W _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA 1 1 A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA 1 2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_555 x,-y,-z 1 0 0 0 -1 0 0 0 -1 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 11 X N N ? 11 Y N N ? 11 Z N N ? 11 AA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OE2 GLU 36 A GLU 36 1_555 M MG CLA . A CLA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? metalc ? metalc2 A OE1 GLN 53 A GLN 53 1_555 O MG CLA . A CLA 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.149 ? metalc ? metalc3 A O GLU 72 A GLU 72 1_555 B CA CA . A CA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.263 ? metalc ? metalc4 A OE2 GLU 72 A GLU 72 1_555 C CA CA . A CA 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.726 ? metalc ? metalc5 A OE1 GLU 82 A GLU 82 1_555 B CA CA . A CA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.499 ? metalc ? metalc6 A OE2 GLU 82 A GLU 82 1_555 B CA CA . A CA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.43 ? metalc ? metalc7 A OE1 GLN 90 A GLN 90 1_555 P MG CLA . A CLA 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.214 ? metalc ? metalc8 A OE2 GLU 99 A GLU 99 1_555 Q MG CLA . A CLA 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.095 ? metalc ? metalc9 A O GLY 119 A GLY 119 1_555 C CA CA . A CA 202 1_655 ? ? ? ? ? ? ? ? ? ? ? ? 2.463 ? metalc ? metalc10 A OE2 GLU 140 A GLU 140 1_555 R MG CLA . A CLA 407 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.112 ? metalc ? metalc11 A OE1 GLN 143 A GLN 143 1_555 S MG KC1 . A KC1 408 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.173 ? metalc ? metalc12 B CA CA . A CA 201 1_555 IA O HOH . A HOH 540 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.428 ? metalc ? metalc13 B CA CA . A CA 201 1_555 IA O HOH . A HOH 552 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.476 ? metalc ? metalc14 B CA CA . A CA 201 1_555 IA O HOH . A HOH 554 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.317 ? metalc ? metalc15 B CA CA . A CA 201 1_555 IA O HOH . A HOH 562 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.397 ? metalc ? metalc16 C CA CA . A CA 202 1_555 IA O HOH . A HOH 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.266 ? metalc ? metalc17 C CA CA . A CA 202 1_555 IA O HOH . A HOH 531 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.255 ? metalc ? metalc18 C CA CA . A CA 202 1_555 IA O HOH . A HOH 571 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.762 ? metalc ? metalc19 C CA CA . A CA 202 1_555 IA O HOH . A HOH 572 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.458 ? metalc ? metalc20 L MG CLA . A CLA 401 1_555 IA O HOH . A HOH 517 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.211 ? # _chem_comp.formula 'C14 H28 O5 S' _chem_comp.formula_weight 308.434 _chem_comp.id SOG _chem_comp.mon_nstd_flag . _chem_comp.name 'octyl 1-thio-beta-D-glucopyranoside' _chem_comp.type d-saccharide _chem_comp.pdbx_synonyms '2-HYDROXYMETHYL-6-OCTYLSULFANYL-TETRAHYDRO-PYRAN-3,4,5-TRIOL;1-S-OCTYL-BETA-D-THIOGLUCOSIDE;octyl 1-thio-beta-D-glucoside;octyl 1-thio-D-glucoside;octyl 1-thio-glucoside' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 SOG sing 1161 n n C1 S1 SOG sing 1162 n n C1 O5 SOG sing 1163 n n C1 H1 SOG sing 1164 n n C2 C3 SOG sing 1165 n n C2 O2 SOG sing 1166 n n C2 H2 SOG sing 1167 n n C3 C4 SOG sing 1168 n n C3 O3 SOG sing 1169 n n C3 H3 SOG sing 1170 n n C4 C5 SOG sing 1171 n n C4 O4 SOG sing 1172 n n C4 H4 SOG sing 1173 n n C5 C6 SOG sing 1174 n n C5 O5 SOG sing 1175 n n C5 H5 SOG sing 1176 n n C6 O6 SOG sing 1177 n n C6 H61 SOG sing 1178 n n C6 H62 SOG sing 1179 n n C1' C2' SOG sing 1180 n n C1' S1 SOG sing 1181 n n C1' "H1'1" SOG sing 1182 n n C1' "H1'2" SOG sing 1183 n n C2' C3' SOG sing 1184 n n C2' "H2'1" SOG sing 1185 n n C2' "H2'2" SOG sing 1186 n n C3' C4' SOG sing 1187 n n C3' "H3'1" SOG sing 1188 n n C3' "H3'2" SOG sing 1189 n n C4' C5' SOG sing 1190 n n C4' "H4'1" SOG sing 1191 n n C4' "H4'2" SOG sing 1192 n n C5' C6' SOG sing 1193 n n C5' "H5'1" SOG sing 1194 n n C5' "H5'2" SOG sing 1195 n n C6' C7' SOG sing 1196 n n C6' "H6'1" SOG sing 1197 n n C6' "H6'2" SOG sing 1198 n n C7' C8' SOG sing 1199 n n C7' "H7'1" SOG sing 1200 n n C7' "H7'2" SOG sing 1201 n n C8' "H8'1" SOG sing 1202 n n C8' "H8'2" SOG sing 1203 n n C8' "H8'3" SOG sing 1204 n n O2 HO2 SOG sing 1205 n n O3 HO3 SOG sing 1206 n n O4 HO4 SOG sing 1207 n n O6 HO6 SOG sing 1208 n n # _atom_sites.entry_id 6A2W _atom_sites.fract_transf_matrix[1][1] 0.020943 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008642 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007079 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CA A 1 201 201 CA CA . C 2 CA A 1 202 202 CA CA . D 3 A86 A 1 301 301 A86 FXT . E 3 A86 A 1 302 302 A86 FXT . F 3 A86 A 1 303 303 A86 FXT . G 3 A86 A 1 304 304 A86 FXT . H 3 A86 A 1 305 305 A86 FXT . I 3 A86 A 1 306 306 A86 FXT . J 3 A86 A 1 307 307 A86 FXT . K 4 DD6 A 1 308 308 DD6 DD6 . L 5 CLA A 1 401 401 CLA CLA . M 5 CLA A 1 402 402 CLA CLA . N 6 KC2 A 1 403 403 KC2 KC2 . O 5 CLA A 1 404 404 CLA CLA . P 5 CLA A 1 405 405 CLA CLA . Q 5 CLA A 1 406 406 CLA CLA . R 5 CLA A 1 407 407 CLA CLA . S 7 KC1 A 1 408 408 KC1 KC1 . T 5 CLA A 1 409 409 CLA CLA . U 8 LMT A 1 410 501 LMT LMT . V 9 DGD A 1 411 502 DGD DGD . W 10 LHG A 1 412 503 LHG LHG . X 11 SOG A 1 413 504 SOG SOG . Y 11 SOG A 1 414 505 SOG SOG . Z 11 SOG A 1 415 506 SOG SOG . AA 11 SOG A 1 416 507 SOG SOG . BA 12 UNL A 1 417 508 UNL UNL . CA 12 UNL A 1 418 509 UNL UNL . DA 12 UNL A 1 419 510 UNL UNL . EA 12 UNL A 1 420 511 UNL UNL . FA 12 UNL A 1 421 512 UNL UNL . GA 12 UNL A 1 422 513 UNL UNL . HA 12 UNL A 1 423 514 UNL UNL . IA 13 HOH A 1 501 679 HOH HOH . IA 13 HOH A 2 502 673 HOH HOH . IA 13 HOH A 3 503 607 HOH HOH . IA 13 HOH A 4 504 635 HOH HOH . IA 13 HOH A 5 505 621 HOH HOH . IA 13 HOH A 6 506 626 HOH HOH . IA 13 HOH A 7 507 669 HOH HOH . IA 13 HOH A 8 508 647 HOH HOH . IA 13 HOH A 9 509 658 HOH HOH . IA 13 HOH A 10 510 630 HOH HOH . IA 13 HOH A 11 511 629 HOH HOH . IA 13 HOH A 12 512 633 HOH HOH . IA 13 HOH A 13 513 624 HOH HOH . IA 13 HOH A 14 514 666 HOH HOH . IA 13 HOH A 15 515 648 HOH HOH . IA 13 HOH A 16 516 662 HOH HOH . IA 13 HOH A 17 517 200 HOH HOH . IA 13 HOH A 18 518 638 HOH HOH . IA 13 HOH A 19 519 636 HOH HOH . IA 13 HOH A 20 520 678 HOH HOH . IA 13 HOH A 21 521 611 HOH HOH . IA 13 HOH A 22 522 674 HOH HOH . IA 13 HOH A 23 523 650 HOH HOH . IA 13 HOH A 24 524 617 HOH HOH . IA 13 HOH A 25 525 625 HOH HOH . IA 13 HOH A 26 526 612 HOH HOH . IA 13 HOH A 27 527 644 HOH HOH . IA 13 HOH A 28 528 610 HOH HOH . IA 13 HOH A 29 529 614 HOH HOH . IA 13 HOH A 30 530 649 HOH HOH . IA 13 HOH A 31 531 605 HOH HOH . IA 13 HOH A 32 532 622 HOH HOH . IA 13 HOH A 33 533 618 HOH HOH . IA 13 HOH A 34 534 640 HOH HOH . IA 13 HOH A 35 535 631 HOH HOH . IA 13 HOH A 36 536 652 HOH HOH . IA 13 HOH A 37 537 609 HOH HOH . IA 13 HOH A 38 538 657 HOH HOH . IA 13 HOH A 39 539 634 HOH HOH . IA 13 HOH A 40 540 604 HOH HOH . IA 13 HOH A 41 541 620 HOH HOH . IA 13 HOH A 42 542 632 HOH HOH . IA 13 HOH A 43 543 619 HOH HOH . IA 13 HOH A 44 544 637 HOH HOH . IA 13 HOH A 45 545 613 HOH HOH . IA 13 HOH A 46 546 642 HOH HOH . IA 13 HOH A 47 547 628 HOH HOH . IA 13 HOH A 48 548 667 HOH HOH . IA 13 HOH A 49 549 623 HOH HOH . IA 13 HOH A 50 550 646 HOH HOH . IA 13 HOH A 51 551 651 HOH HOH . IA 13 HOH A 52 552 603 HOH HOH . IA 13 HOH A 53 553 615 HOH HOH . IA 13 HOH A 54 554 601 HOH HOH . IA 13 HOH A 55 555 656 HOH HOH . IA 13 HOH A 56 556 627 HOH HOH . IA 13 HOH A 57 557 616 HOH HOH . IA 13 HOH A 58 558 645 HOH HOH . IA 13 HOH A 59 559 641 HOH HOH . IA 13 HOH A 60 560 671 HOH HOH . IA 13 HOH A 61 561 664 HOH HOH . IA 13 HOH A 62 562 602 HOH HOH . IA 13 HOH A 63 563 659 HOH HOH . IA 13 HOH A 64 564 677 HOH HOH . IA 13 HOH A 65 565 653 HOH HOH . IA 13 HOH A 66 566 672 HOH HOH . IA 13 HOH A 67 567 675 HOH HOH . IA 13 HOH A 68 568 660 HOH HOH . IA 13 HOH A 69 569 661 HOH HOH . IA 13 HOH A 70 570 665 HOH HOH . IA 13 HOH A 71 571 606 HOH HOH . IA 13 HOH A 72 572 608 HOH HOH . IA 13 HOH A 73 573 663 HOH HOH . IA 13 HOH A 74 574 643 HOH HOH . IA 13 HOH A 75 575 639 HOH HOH . IA 13 HOH A 76 576 676 HOH HOH . IA 13 HOH A 77 577 654 HOH HOH . IA 13 HOH A 78 578 668 HOH HOH . IA 13 HOH A 79 579 655 HOH HOH . IA 13 HOH A 80 580 670 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 SOG . . . X 11 -37.72 -21.219 27.661 1 110.44 ? C1 SOG 413 A 1 HETATM 2 C C2 SOG . . . X 11 -38.653 -21.828 26.614 1 117.66 ? C2 SOG 413 A 1 HETATM 3 C C3 SOG . . . X 11 -40.067 -21.36 26.909 1 116.03 ? C3 SOG 413 A 1 HETATM 4 C C4 SOG . . . X 11 -40.45 -21.874 28.286 1 113.97 ? C4 SOG 413 A 1 HETATM 5 C C5 SOG . . . X 11 -39.422 -21.418 29.317 1 109.3 ? C5 SOG 413 A 1 HETATM 6 C C6 SOG . . . X 11 -39.737 -22.035 30.669 1 108.59 ? C6 SOG 413 A 1 HETATM 7 C C1' SOG . . . X 11 -35.162 -20.344 28.245 1 87.99 ? C1' SOG 413 A 1 HETATM 8 C C2' SOG . . . X 11 -33.746 -20.087 27.737 1 75.64 ? C2' SOG 413 A 1 HETATM 9 C C3' SOG . . . X 11 -33.222 -18.831 28.423 1 66.1 ? C3' SOG 413 A 1 HETATM 10 C C4' SOG . . . X 11 -31.76 -18.523 28.124 1 57.62 ? C4' SOG 413 A 1 HETATM 11 C C5' SOG . . . X 11 -31.359 -17.34 28.99 1 53.37 ? C5' SOG 413 A 1 HETATM 12 C C6' SOG . . . X 11 -29.857 -17.231 29.189 1 50.27 ? C6' SOG 413 A 1 HETATM 13 C C7' SOG . . . X 11 -29.488 -15.771 29.399 1 48.93 ? C7' SOG 413 A 1 HETATM 14 C C8' SOG . . . X 11 -28.594 -15.59 30.604 1 51.44 ? C8' SOG 413 A 1 HETATM 15 S S1 SOG . . . X 11 -36.017 -21.521 27.251 1 104.03 ? S1 SOG 413 A 1 HETATM 16 O O2 SOG . . . X 11 -38.292 -21.45 25.281 1 120.92 ? O2 SOG 413 A 1 HETATM 17 O O3 SOG . . . X 11 -40.976 -21.842 25.913 1 119.22 ? O3 SOG 413 A 1 HETATM 18 O O4 SOG . . . X 11 -41.744 -21.37 28.63 1 114.67 ? O4 SOG 413 A 1 HETATM 19 O O5 SOG . . . X 11 -38.09 -21.778 28.928 1 110.38 ? O5 SOG 413 A 1 HETATM 20 O O6 SOG . . . X 11 -38.876 -21.452 31.647 1 105.79 ? O6 SOG 413 A 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 327 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 20 #