data_6A38
#
_model_server_result.job_id            524hphOlbQJYFXOkW6i4vg 
_model_server_result.datetime_utc      '2025-03-07 00:22:03' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6a38 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"G","auth_seq_id":303}' 
#
_entry.id    6A38 
#
_exptl.entry_id    6A38 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              62.068 
_entity.id                          7 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-ETHANEDIOL 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6A38 
_cell.length_a            105.438 
_cell.length_b            105.438 
_cell.length_c            303.066 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6A38 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        96 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 43 21 2' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      7 
_struct_asym.id                             G 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OG1 THR 43 A THR 24 1_555 F MG MG . A MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.059 ? 
metalc ? metalc2 A OG1 THR 61 A THR 42 1_555 F MG MG . A MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.098 ? 
metalc ? metalc3 E O2G GTP . A GTP 301 1_555 F MG MG . A MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.806 ? 
metalc ? metalc4 E O1B GTP . A GTP 301 1_555 F MG MG . A MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? 
metalc ? metalc5 F MG MG . A MG 302 1_555 K O HOH . A HOH 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.02 ? 
metalc ? metalc6 F MG MG . A MG 302 1_555 K O HOH . A HOH 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.872 ? 
metalc ? metalc7 C OH TYR 410 C TYR 465 1_555 J NA NA . C NA 1103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.63 ? 
metalc ? metalc8 C O TRP 455 C TRP 510 1_555 J NA NA . C NA 1103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.035 ? 
metalc ? metalc9 C OH TYR 502 C TYR 557 1_555 J NA NA . C NA 1103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.519 ? 
#
_chem_comp.formula           'C2 H6 O2' 
_chem_comp.formula_weight    62.068 
_chem_comp.id                EDO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-ETHANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'ETHYLENE GLYCOL' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 EDO sing 83 n n 
C1 C2 EDO sing 84 n n 
C1 H11 EDO sing 85 n n 
C1 H12 EDO sing 86 n n 
O1 HO1 EDO sing 87 n n 
C2 O2 EDO sing 88 n n 
C2 H21 EDO sing 89 n n 
C2 H22 EDO sing 90 n n 
O2 HO2 EDO sing 91 n n 
#
_atom_sites.entry_id                     6A38 
_atom_sites.fract_transf_matrix[1][1]    0.009484 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009484 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.0033 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 5 GTP A 1 301 1177 GTP GTP . 
F 6 MG A 1 302 302 MG MG . 
G 7 EDO A 1 303 303 EDO EDO . 
H 8 GOL C 1 1101 1101 GOL GOL . 
I 8 GOL C 1 1102 1102 GOL GOL . 
J 9 NA C 1 1103 1104 NA NA . 
K 10 HOH A 1 401 107 HOH HOH . 
K 10 HOH A 2 402 1 HOH HOH . 
K 10 HOH A 3 403 89 HOH HOH . 
K 10 HOH A 4 404 93 HOH HOH . 
K 10 HOH A 5 405 79 HOH HOH . 
K 10 HOH A 6 406 2 HOH HOH . 
K 10 HOH A 7 407 46 HOH HOH . 
K 10 HOH A 8 408 5 HOH HOH . 
K 10 HOH A 9 409 106 HOH HOH . 
K 10 HOH A 10 410 28 HOH HOH . 
K 10 HOH A 11 411 18 HOH HOH . 
K 10 HOH A 12 412 30 HOH HOH . 
K 10 HOH A 13 413 56 HOH HOH . 
K 10 HOH A 14 414 32 HOH HOH . 
K 10 HOH A 15 415 95 HOH HOH . 
K 10 HOH A 16 416 27 HOH HOH . 
K 10 HOH A 17 417 116 HOH HOH . 
K 10 HOH A 18 418 31 HOH HOH . 
K 10 HOH A 19 419 98 HOH HOH . 
K 10 HOH A 20 420 48 HOH HOH . 
K 10 HOH A 21 421 60 HOH HOH . 
K 10 HOH A 22 422 44 HOH HOH . 
K 10 HOH A 23 423 112 HOH HOH . 
K 10 HOH A 24 424 94 HOH HOH . 
L 10 HOH B 1 301 54 HOH HOH . 
L 10 HOH B 2 302 22 HOH HOH . 
M 10 HOH C 1 1201 21 HOH HOH . 
M 10 HOH C 2 1202 10 HOH HOH . 
M 10 HOH C 3 1203 14 HOH HOH . 
M 10 HOH C 4 1204 3 HOH HOH . 
M 10 HOH C 5 1205 7 HOH HOH . 
M 10 HOH C 6 1206 90 HOH HOH . 
M 10 HOH C 7 1207 36 HOH HOH . 
M 10 HOH C 8 1208 43 HOH HOH . 
M 10 HOH C 9 1209 76 HOH HOH . 
M 10 HOH C 10 1210 23 HOH HOH . 
M 10 HOH C 11 1211 24 HOH HOH . 
M 10 HOH C 12 1212 40 HOH HOH . 
M 10 HOH C 13 1213 29 HOH HOH . 
M 10 HOH C 14 1214 97 HOH HOH . 
M 10 HOH C 15 1215 69 HOH HOH . 
M 10 HOH C 16 1216 26 HOH HOH . 
M 10 HOH C 17 1217 12 HOH HOH . 
M 10 HOH C 18 1218 50 HOH HOH . 
M 10 HOH C 19 1219 38 HOH HOH . 
M 10 HOH C 20 1220 103 HOH HOH . 
M 10 HOH C 21 1221 87 HOH HOH . 
M 10 HOH C 22 1222 113 HOH HOH . 
M 10 HOH C 23 1223 108 HOH HOH . 
M 10 HOH C 24 1224 78 HOH HOH . 
M 10 HOH C 25 1225 104 HOH HOH . 
M 10 HOH C 26 1226 83 HOH HOH . 
M 10 HOH C 27 1227 25 HOH HOH . 
M 10 HOH C 28 1228 110 HOH HOH . 
M 10 HOH C 29 1229 82 HOH HOH . 
M 10 HOH C 30 1230 19 HOH HOH . 
M 10 HOH C 31 1231 17 HOH HOH . 
M 10 HOH C 32 1232 11 HOH HOH . 
M 10 HOH C 33 1233 47 HOH HOH . 
M 10 HOH C 34 1234 88 HOH HOH . 
M 10 HOH C 35 1235 71 HOH HOH . 
M 10 HOH C 36 1236 68 HOH HOH . 
M 10 HOH C 37 1237 4 HOH HOH . 
M 10 HOH C 38 1238 33 HOH HOH . 
M 10 HOH C 39 1239 105 HOH HOH . 
M 10 HOH C 40 1240 6 HOH HOH . 
M 10 HOH C 41 1241 102 HOH HOH . 
M 10 HOH C 42 1242 57 HOH HOH . 
M 10 HOH C 43 1243 109 HOH HOH . 
M 10 HOH C 44 1244 84 HOH HOH . 
M 10 HOH C 45 1245 53 HOH HOH . 
M 10 HOH C 46 1246 42 HOH HOH . 
M 10 HOH C 47 1247 15 HOH HOH . 
M 10 HOH C 48 1248 70 HOH HOH . 
M 10 HOH C 49 1249 67 HOH HOH . 
M 10 HOH C 50 1250 96 HOH HOH . 
M 10 HOH C 51 1251 77 HOH HOH . 
M 10 HOH C 52 1252 62 HOH HOH . 
M 10 HOH C 53 1253 51 HOH HOH . 
M 10 HOH C 54 1254 64 HOH HOH . 
M 10 HOH C 55 1255 86 HOH HOH . 
M 10 HOH C 56 1256 101 HOH HOH . 
M 10 HOH C 57 1257 49 HOH HOH . 
M 10 HOH C 58 1258 16 HOH HOH . 
M 10 HOH C 59 1259 13 HOH HOH . 
M 10 HOH C 60 1260 39 HOH HOH . 
M 10 HOH C 61 1261 20 HOH HOH . 
M 10 HOH C 62 1262 37 HOH HOH . 
M 10 HOH C 63 1263 81 HOH HOH . 
M 10 HOH C 64 1264 52 HOH HOH . 
M 10 HOH C 65 1265 41 HOH HOH . 
M 10 HOH C 66 1266 8 HOH HOH . 
M 10 HOH C 67 1267 59 HOH HOH . 
M 10 HOH C 68 1268 35 HOH HOH . 
M 10 HOH C 69 1269 74 HOH HOH . 
M 10 HOH C 70 1270 117 HOH HOH . 
M 10 HOH C 71 1271 111 HOH HOH . 
M 10 HOH C 72 1272 34 HOH HOH . 
M 10 HOH C 73 1273 100 HOH HOH . 
M 10 HOH C 74 1274 63 HOH HOH . 
M 10 HOH C 75 1275 61 HOH HOH . 
M 10 HOH C 76 1276 92 HOH HOH . 
M 10 HOH C 77 1277 72 HOH HOH . 
M 10 HOH C 78 1278 114 HOH HOH . 
M 10 HOH C 79 1279 45 HOH HOH . 
M 10 HOH C 80 1280 80 HOH HOH . 
M 10 HOH C 81 1281 9 HOH HOH . 
M 10 HOH C 82 1282 55 HOH HOH . 
M 10 HOH C 83 1283 73 HOH HOH . 
M 10 HOH C 84 1284 65 HOH HOH . 
M 10 HOH C 85 1285 99 HOH HOH . 
M 10 HOH C 86 1286 75 HOH HOH . 
M 10 HOH C 87 1287 66 HOH HOH . 
M 10 HOH C 88 1288 115 HOH HOH . 
M 10 HOH C 89 1289 91 HOH HOH . 
M 10 HOH C 90 1290 85 HOH HOH . 
N 10 HOH D 1 101 58 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 EDO . . . G 7 55.097 -24.142 36.464 1 80.3 ? C1 EDO 303 A 1 
HETATM 2 O O1 EDO . . . G 7 53.978 -23.275 36.219 1 77.12 ? O1 EDO 303 A 1 
HETATM 3 C C2 EDO . . . G 7 56.254 -23.354 37.081 1 80.21 ? C2 EDO 303 A 1 
HETATM 4 O O2 EDO . . . G 7 55.821 -22.63 38.244 1 77.28 ? O2 EDO 303 A 1 
#
_model_server_stats.io_time_ms              26 
_model_server_stats.parse_time_ms           13 
_model_server_stats.create_model_time_ms    23 
_model_server_stats.query_time_ms           295 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           4 
#