data_6A3I # _model_server_result.job_id F1QT-N8XlfLSMetgW2_6gQ _model_server_result.datetime_utc '2024-11-28 15:28:04' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6a3i # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":401}' # _entry.id 6A3I # _exptl.entry_id 6A3I _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 162.141 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description Levoglucosan _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 104.48 _cell.angle_gamma 90 _cell.entry_id 6A3I _cell.length_a 76.725 _cell.length_b 92.354 _cell.length_c 100.563 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6A3I _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 I N N # _chem_comp.formula 'C6 H10 O5' _chem_comp.formula_weight 162.141 _chem_comp.id 4PW _chem_comp.mon_nstd_flag . _chem_comp.name Levoglucosan _chem_comp.type non-polymer _chem_comp.pdbx_synonyms (1R,2S,3S,4R,5R)-6,8-dioxabicyclo[3.2.1]octane-2,3,4-triol # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O1 C2 4PW sing 1 n n C2 C1 4PW sing 2 n n C2 C3 4PW sing 3 n n C1 O6 4PW sing 4 n n C1 O5 4PW sing 5 n n O3 C3 4PW sing 6 n n O6 C6 4PW sing 7 n n C3 C4 4PW sing 8 n n O5 C5 4PW sing 9 n n C6 C5 4PW sing 10 n n C4 C5 4PW sing 11 n n C4 O4 4PW sing 12 n n O3 H1 4PW sing 13 n n C3 H2 4PW sing 14 n n C2 H3 4PW sing 15 n n O1 H4 4PW sing 16 n n C4 H5 4PW sing 17 n n O4 H6 4PW sing 18 n n C5 H7 4PW sing 19 n n C6 H8 4PW sing 20 n n C6 H9 4PW sing 21 n n C1 H10 4PW sing 22 n n # _atom_sites.entry_id 6A3I _atom_sites.fract_transf_matrix[1][1] 0.013034 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.003366 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010828 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01027 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 4PW A 1 401 401 4PW 4PW . F 3 NAI A 1 402 1 NAI NAD . G 3 NAI B 1 401 2 NAI NAD . H 3 NAI C 1 401 3 NAI NAD . I 2 4PW D 1 401 401 4PW 4PW . J 4 HOH A 1 501 7 HOH HOH . J 4 HOH A 2 502 4 HOH HOH . J 4 HOH A 3 503 31 HOH HOH . J 4 HOH A 4 504 23 HOH HOH . J 4 HOH A 5 505 22 HOH HOH . J 4 HOH A 6 506 11 HOH HOH . J 4 HOH A 7 507 14 HOH HOH . J 4 HOH A 8 508 34 HOH HOH . J 4 HOH A 9 509 61 HOH HOH . J 4 HOH A 10 510 39 HOH HOH . J 4 HOH A 11 511 58 HOH HOH . J 4 HOH A 12 512 26 HOH HOH . J 4 HOH A 13 513 13 HOH HOH . J 4 HOH A 14 514 37 HOH HOH . J 4 HOH A 15 515 9 HOH HOH . J 4 HOH A 16 516 15 HOH HOH . J 4 HOH A 17 517 38 HOH HOH . J 4 HOH A 18 518 41 HOH HOH . J 4 HOH A 19 519 25 HOH HOH . J 4 HOH A 20 520 2 HOH HOH . J 4 HOH A 21 521 18 HOH HOH . J 4 HOH A 22 522 8 HOH HOH . J 4 HOH A 23 523 47 HOH HOH . J 4 HOH A 24 524 32 HOH HOH . J 4 HOH A 25 525 28 HOH HOH . J 4 HOH A 26 526 24 HOH HOH . J 4 HOH A 27 527 43 HOH HOH . J 4 HOH A 28 528 54 HOH HOH . J 4 HOH A 29 529 53 HOH HOH . J 4 HOH A 30 530 51 HOH HOH . K 4 HOH B 1 501 44 HOH HOH . K 4 HOH B 2 502 27 HOH HOH . K 4 HOH B 3 503 6 HOH HOH . K 4 HOH B 4 504 17 HOH HOH . K 4 HOH B 5 505 20 HOH HOH . K 4 HOH B 6 506 33 HOH HOH . K 4 HOH B 7 507 10 HOH HOH . K 4 HOH B 8 508 16 HOH HOH . K 4 HOH B 9 509 59 HOH HOH . K 4 HOH B 10 510 3 HOH HOH . K 4 HOH B 11 511 55 HOH HOH . K 4 HOH B 12 512 35 HOH HOH . K 4 HOH B 13 513 49 HOH HOH . K 4 HOH B 14 514 48 HOH HOH . K 4 HOH B 15 515 50 HOH HOH . K 4 HOH B 16 516 21 HOH HOH . K 4 HOH B 17 517 52 HOH HOH . L 4 HOH C 1 501 60 HOH HOH . L 4 HOH C 2 502 42 HOH HOH . L 4 HOH C 3 503 36 HOH HOH . L 4 HOH C 4 504 19 HOH HOH . L 4 HOH C 5 505 56 HOH HOH . L 4 HOH C 6 506 5 HOH HOH . L 4 HOH C 7 507 45 HOH HOH . L 4 HOH C 8 508 12 HOH HOH . L 4 HOH C 9 509 46 HOH HOH . L 4 HOH C 10 510 29 HOH HOH . M 4 HOH D 1 501 1 HOH HOH . M 4 HOH D 2 502 30 HOH HOH . M 4 HOH D 3 503 57 HOH HOH . M 4 HOH D 4 504 40 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O3 4PW . . . I 2 34.384 10.169 -38.96 1 52.36 ? O3 4PW 401 D 1 HETATM 2 C C3 4PW . . . I 2 33.849 8.81 -38.814 1 64.87 ? C3 4PW 401 D 1 HETATM 3 C C2 4PW . . . I 2 32.972 8.655 -37.561 1 60.79 ? C2 4PW 401 D 1 HETATM 4 O O1 4PW . . . I 2 31.75 9.432 -37.72 1 56.96 ? O1 4PW 401 D 1 HETATM 5 C C4 4PW . . . I 2 34.955 7.763 -38.711 1 67.14 ? C4 4PW 401 D 1 HETATM 6 O O4 4PW . . . I 2 35.753 7.869 -39.857 1 72.4 ? O4 4PW 401 D 1 HETATM 7 C C5 4PW . . . I 2 34.351 6.304 -38.609 1 67.08 ? C5 4PW 401 D 1 HETATM 8 O O5 4PW . . . I 2 32.923 6.355 -38.527 1 73.89 ? O5 4PW 401 D 1 HETATM 9 C C6 4PW . . . I 2 34.596 5.695 -37.269 1 65.05 ? C6 4PW 401 D 1 HETATM 10 O O6 4PW . . . I 2 33.725 6.518 -36.435 1 67.62 ? O6 4PW 401 D 1 HETATM 11 C C1 4PW . . . I 2 32.714 7.123 -37.326 1 67.04 ? C1 4PW 401 D 1 # _model_server_stats.io_time_ms 103 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 24 _model_server_stats.query_time_ms 295 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 11 #