data_6A3I # _model_server_result.job_id qczvZvFK2ujg-WpO8nyYwg _model_server_result.datetime_utc '2024-11-28 16:01:37' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6a3i # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":402}' # _entry.id 6A3I # _exptl.entry_id 6A3I _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 665.441 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 104.48 _cell.angle_gamma 90 _cell.entry_id 6A3I _cell.length_a 76.725 _cell.length_b 92.354 _cell.length_c 100.563 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6A3I _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 F N N ? 3 G N N ? 3 H N N # _chem_comp.formula 'C21 H29 N7 O14 P2' _chem_comp.formula_weight 665.441 _chem_comp.id NAI _chem_comp.mon_nstd_flag . _chem_comp.name '1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms NADH # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NAI doub 259 n n PA O2A NAI sing 260 n n PA O5B NAI sing 261 n n PA O3 NAI sing 262 n n O2A HOA2 NAI sing 263 n n O5B C5B NAI sing 264 n n C5B C4B NAI sing 265 n n C5B H51A NAI sing 266 n n C5B H52A NAI sing 267 n n C4B O4B NAI sing 268 n n C4B C3B NAI sing 269 n n C4B H4B NAI sing 270 n n O4B C1B NAI sing 271 n n C3B O3B NAI sing 272 n n C3B C2B NAI sing 273 n n C3B H3B NAI sing 274 n n O3B HO3A NAI sing 275 n n C2B O2B NAI sing 276 n n C2B C1B NAI sing 277 n n C2B H2B NAI sing 278 n n O2B HO2A NAI sing 279 n n C1B N9A NAI sing 280 n n C1B H1B NAI sing 281 n n N9A C8A NAI sing 282 n y N9A C4A NAI sing 283 n y C8A N7A NAI doub 284 n y C8A H8A NAI sing 285 n n N7A C5A NAI sing 286 n y C5A C6A NAI sing 287 n y C5A C4A NAI doub 288 n y C6A N6A NAI sing 289 n n C6A N1A NAI doub 290 n y N6A H61A NAI sing 291 n n N6A H62A NAI sing 292 n n N1A C2A NAI sing 293 n y C2A N3A NAI doub 294 n y C2A H2A NAI sing 295 n n N3A C4A NAI sing 296 n y O3 PN NAI sing 297 n n PN O1N NAI sing 298 n n PN O2N NAI doub 299 n n PN O5D NAI sing 300 n n O1N HO1N NAI sing 301 n n O5D C5D NAI sing 302 n n C5D C4D NAI sing 303 n n C5D H51N NAI sing 304 n n C5D H52N NAI sing 305 n n C4D O4D NAI sing 306 n n C4D C3D NAI sing 307 n n C4D H4D NAI sing 308 n n O4D C1D NAI sing 309 n n C3D O3D NAI sing 310 n n C3D C2D NAI sing 311 n n C3D H3D NAI sing 312 n n O3D HO3N NAI sing 313 n n C2D O2D NAI sing 314 n n C2D C1D NAI sing 315 n n C2D H2D NAI sing 316 n n O2D HO2N NAI sing 317 n n C1D N1N NAI sing 318 n n C1D H1D NAI sing 319 n n N1N C2N NAI sing 320 n n N1N C6N NAI sing 321 n n C2N C3N NAI doub 322 n n C2N H2N NAI sing 323 n n C3N C7N NAI sing 324 n n C3N C4N NAI sing 325 n n C7N O7N NAI doub 326 n n C7N N7N NAI sing 327 n n N7N H71N NAI sing 328 n n N7N H72N NAI sing 329 n n C4N C5N NAI sing 330 n n C4N H4N NAI sing 331 n n C4N H42N NAI sing 332 n n C5N C6N NAI doub 333 n n C5N H5N NAI sing 334 n n C6N H6N NAI sing 335 n n # _atom_sites.entry_id 6A3I _atom_sites.fract_transf_matrix[1][1] 0.013034 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.003366 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010828 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01027 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 4PW A 1 401 401 4PW 4PW . F 3 NAI A 1 402 1 NAI NAD . G 3 NAI B 1 401 2 NAI NAD . H 3 NAI C 1 401 3 NAI NAD . I 2 4PW D 1 401 401 4PW 4PW . J 4 HOH A 1 501 7 HOH HOH . J 4 HOH A 2 502 4 HOH HOH . J 4 HOH A 3 503 31 HOH HOH . J 4 HOH A 4 504 23 HOH HOH . J 4 HOH A 5 505 22 HOH HOH . J 4 HOH A 6 506 11 HOH HOH . J 4 HOH A 7 507 14 HOH HOH . J 4 HOH A 8 508 34 HOH HOH . J 4 HOH A 9 509 61 HOH HOH . J 4 HOH A 10 510 39 HOH HOH . J 4 HOH A 11 511 58 HOH HOH . J 4 HOH A 12 512 26 HOH HOH . J 4 HOH A 13 513 13 HOH HOH . J 4 HOH A 14 514 37 HOH HOH . J 4 HOH A 15 515 9 HOH HOH . J 4 HOH A 16 516 15 HOH HOH . J 4 HOH A 17 517 38 HOH HOH . J 4 HOH A 18 518 41 HOH HOH . J 4 HOH A 19 519 25 HOH HOH . J 4 HOH A 20 520 2 HOH HOH . J 4 HOH A 21 521 18 HOH HOH . J 4 HOH A 22 522 8 HOH HOH . J 4 HOH A 23 523 47 HOH HOH . J 4 HOH A 24 524 32 HOH HOH . J 4 HOH A 25 525 28 HOH HOH . J 4 HOH A 26 526 24 HOH HOH . J 4 HOH A 27 527 43 HOH HOH . J 4 HOH A 28 528 54 HOH HOH . J 4 HOH A 29 529 53 HOH HOH . J 4 HOH A 30 530 51 HOH HOH . K 4 HOH B 1 501 44 HOH HOH . K 4 HOH B 2 502 27 HOH HOH . K 4 HOH B 3 503 6 HOH HOH . K 4 HOH B 4 504 17 HOH HOH . K 4 HOH B 5 505 20 HOH HOH . K 4 HOH B 6 506 33 HOH HOH . K 4 HOH B 7 507 10 HOH HOH . K 4 HOH B 8 508 16 HOH HOH . K 4 HOH B 9 509 59 HOH HOH . K 4 HOH B 10 510 3 HOH HOH . K 4 HOH B 11 511 55 HOH HOH . K 4 HOH B 12 512 35 HOH HOH . K 4 HOH B 13 513 49 HOH HOH . K 4 HOH B 14 514 48 HOH HOH . K 4 HOH B 15 515 50 HOH HOH . K 4 HOH B 16 516 21 HOH HOH . K 4 HOH B 17 517 52 HOH HOH . L 4 HOH C 1 501 60 HOH HOH . L 4 HOH C 2 502 42 HOH HOH . L 4 HOH C 3 503 36 HOH HOH . L 4 HOH C 4 504 19 HOH HOH . L 4 HOH C 5 505 56 HOH HOH . L 4 HOH C 6 506 5 HOH HOH . L 4 HOH C 7 507 45 HOH HOH . L 4 HOH C 8 508 12 HOH HOH . L 4 HOH C 9 509 46 HOH HOH . L 4 HOH C 10 510 29 HOH HOH . M 4 HOH D 1 501 1 HOH HOH . M 4 HOH D 2 502 30 HOH HOH . M 4 HOH D 3 503 57 HOH HOH . M 4 HOH D 4 504 40 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NAI . . . F 3 7.603 -12.712 6.45 1 54.26 ? PA NAI 402 A 1 HETATM 2 O O1A NAI . . . F 3 6.979 -14.044 6.15 1 51.19 ? O1A NAI 402 A 1 HETATM 3 O O2A NAI . . . F 3 9.083 -12.406 6.242 1 51.47 ? O2A NAI 402 A 1 HETATM 4 O O5B NAI . . . F 3 7.345 -12.452 7.982 1 49.73 ? O5B NAI 402 A 1 HETATM 5 C C5B NAI . . . F 3 6.228 -13.08 8.606 1 54.86 ? C5B NAI 402 A 1 HETATM 6 C C4B NAI . . . F 3 6.648 -13.223 10.038 1 54.92 ? C4B NAI 402 A 1 HETATM 7 O O4B NAI . . . F 3 5.512 -13.136 10.876 1 50.2 ? O4B NAI 402 A 1 HETATM 8 C C3B NAI . . . F 3 7.365 -14.549 10.26 1 52.16 ? C3B NAI 402 A 1 HETATM 9 O O3B NAI . . . F 3 8.637 -14.327 10.873 1 57.17 ? O3B NAI 402 A 1 HETATM 10 C C2B NAI . . . F 3 6.504 -15.245 11.262 1 50.36 ? C2B NAI 402 A 1 HETATM 11 O O2B NAI . . . F 3 7.331 -15.934 12.183 1 47.32 ? O2B NAI 402 A 1 HETATM 12 C C1B NAI . . . F 3 5.765 -14.086 11.909 1 53.17 ? C1B NAI 402 A 1 HETATM 13 N N9A NAI . . . F 3 4.56 -14.624 12.55 1 50.8 ? N9A NAI 402 A 1 HETATM 14 C C8A NAI . . . F 3 3.613 -15.401 11.982 1 50.47 ? C8A NAI 402 A 1 HETATM 15 N N7A NAI . . . F 3 2.636 -15.681 12.883 1 49.71 ? N7A NAI 402 A 1 HETATM 16 C C5A NAI . . . F 3 2.999 -15.101 14.036 1 48.79 ? C5A NAI 402 A 1 HETATM 17 C C6A NAI . . . F 3 2.459 -15.015 15.391 1 49.74 ? C6A NAI 402 A 1 HETATM 18 N N6A NAI . . . F 3 1.312 -15.666 15.637 1 48.72 ? N6A NAI 402 A 1 HETATM 19 N N1A NAI . . . F 3 3.115 -14.265 16.328 1 47.34 ? N1A NAI 402 A 1 HETATM 20 C C2A NAI . . . F 3 4.274 -13.65 16.064 1 46.4 ? C2A NAI 402 A 1 HETATM 21 N N3A NAI . . . F 3 4.827 -13.685 14.833 1 48.76 ? N3A NAI 402 A 1 HETATM 22 C C4A NAI . . . F 3 4.255 -14.382 13.811 1 49.34 ? C4A NAI 402 A 1 HETATM 23 O O3 NAI . . . F 3 6.618 -11.667 5.693 1 53.32 ? O3 NAI 402 A 1 HETATM 24 P PN NAI . . . F 3 6.852 -10.077 5.545 1 48.39 ? PN NAI 402 A 1 HETATM 25 O O1N NAI . . . F 3 7.351 -9.854 4.159 1 49.88 ? O1N NAI 402 A 1 HETATM 26 O O2N NAI . . . F 3 7.628 -9.546 6.718 1 41.57 ? O2N NAI 402 A 1 HETATM 27 O O5D NAI . . . F 3 5.315 -9.598 5.563 1 47.28 ? O5D NAI 402 A 1 HETATM 28 C C5D NAI . . . F 3 4.793 -8.753 6.593 1 45.18 ? C5D NAI 402 A 1 HETATM 29 C C4D NAI . . . F 3 3.704 -7.834 6.032 1 42.6 ? C4D NAI 402 A 1 HETATM 30 O O4D NAI . . . F 3 4.286 -6.761 5.25 1 41.11 ? O4D NAI 402 A 1 HETATM 31 C C3D NAI . . . F 3 2.811 -8.644 5.13 1 40.15 ? C3D NAI 402 A 1 HETATM 32 O O3D NAI . . . F 3 1.456 -8.568 5.499 1 38.4 ? O3D NAI 402 A 1 HETATM 33 C C2D NAI . . . F 3 3.052 -8.033 3.765 1 41.9 ? C2D NAI 402 A 1 HETATM 34 O O2D NAI . . . F 3 1.797 -7.626 3.278 1 47.18 ? O2D NAI 402 A 1 HETATM 35 C C1D NAI . . . F 3 4.063 -6.874 3.846 1 35.58 ? C1D NAI 402 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 25 _model_server_stats.query_time_ms 298 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 35 #