data_6A3T # _model_server_result.job_id 4Ey4azzLmk-DUD3r4eCBAw _model_server_result.datetime_utc '2024-11-24 07:19:11' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6a3t # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":402}' # _entry.id 6A3T # _exptl.entry_id 6A3T _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 607.506 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1-{5-[(1S)-2-amino-1-hydroxy-2-oxo-1-phenylethyl]-7,8-dimethyl-2,4-dioxo-1,2,3,4-tetrahydrobenzo[g]pteridine-5,10-diium-10-yl}-1-deoxy-5-O-phosphono-D-ribitol _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6A3T _cell.length_a 137.436 _cell.length_b 137.436 _cell.length_c 111.733 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6A3T _symmetry.cell_setting ? _symmetry.Int_Tables_number 97 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 4 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x,-y,z -1 0 0 0 -1 0 0 0 1 0 0 0 3 'crystal symmetry operation' 3_555 -y,x,z 0 -1 0 1 0 0 0 0 1 0 0 0 4 'crystal symmetry operation' 4_555 y,-x,z 0 1 0 -1 0 0 0 0 1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C25 H30 N5 O11 P 2' _chem_comp.formula_weight 607.506 _chem_comp.id 9Q0 _chem_comp.mon_nstd_flag . _chem_comp.name 1-{5-[(1S)-2-amino-1-hydroxy-2-oxo-1-phenylethyl]-7,8-dimethyl-2,4-dioxo-1,2,3,4-tetrahydrobenzo[g]pteridine-5,10-diium-10-yl}-1-deoxy-5-O-phosphono-D-ribitol _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O2 C2 9Q0 doub 1 n n OBD CAU 9Q0 sing 2 n n C2 N1 9Q0 sing 3 n n C2 N3 9Q0 sing 4 n n N1 C11 9Q0 sing 5 n n CAU CAT 9Q0 sing 6 n n CAU CAV 9Q0 sing 7 n n N3 C4 9Q0 sing 8 n n OBE CAT 9Q0 sing 9 n n CAW CAV 9Q0 sing 10 n n CAW OAX 9Q0 sing 11 n n CAT CAS 9Q0 sing 12 n n CAV OBC 9Q0 sing 13 n n CAS N10 9Q0 sing 14 n n OAX PAY 9Q0 sing 15 n n C11 N10 9Q0 doub 16 n y C11 C4A 9Q0 sing 17 n y C4 C4A 9Q0 sing 18 n n C4 O4 9Q0 doub 19 n n OBB PAY 9Q0 doub 20 n n N10 C9A 9Q0 sing 21 n y C4A N5 9Q0 doub 22 n y OBO CBG 9Q0 sing 23 n n PAY OAZ 9Q0 sing 24 n n PAY OBA 9Q0 sing 25 n n NBP CBH 9Q0 sing 26 n n C9A C9 9Q0 doub 27 n y C9A C5A 9Q0 sing 28 n y N5 CBG 9Q0 sing 29 n n N5 C5A 9Q0 sing 30 n y CBG CBH 9Q0 sing 31 n n CBG CBF 9Q0 sing 32 n n CBH OBI 9Q0 doub 33 n n C9 C8 9Q0 sing 34 n y C5A C6 9Q0 doub 35 n y CBJ CBF 9Q0 doub 36 n y CBJ CBK 9Q0 sing 37 n y CBF CBN 9Q0 sing 38 n y CBK CBL 9Q0 doub 39 n y C8 CAH 9Q0 sing 40 n n C8 C7 9Q0 doub 41 n y C6 C7 9Q0 sing 42 n y CBN CBM 9Q0 doub 43 n y C7 CAA 9Q0 sing 44 n n CBL CBM 9Q0 sing 45 n y C6 H1 9Q0 sing 46 n n C9 H2 9Q0 sing 47 n n N1 H3 9Q0 sing 48 n n N3 H4 9Q0 sing 49 n n CAA H5 9Q0 sing 50 n n CAA H6 9Q0 sing 51 n n CAA H7 9Q0 sing 52 n n CAH H8 9Q0 sing 53 n n CAH H9 9Q0 sing 54 n n CAH H10 9Q0 sing 55 n n CAS H11 9Q0 sing 56 n n CAS H12 9Q0 sing 57 n n CAT H13 9Q0 sing 58 n n CAU H14 9Q0 sing 59 n n CAV H15 9Q0 sing 60 n n CAW H16 9Q0 sing 61 n n CAW H17 9Q0 sing 62 n n CBJ H18 9Q0 sing 63 n n CBK H19 9Q0 sing 64 n n CBL H20 9Q0 sing 65 n n CBM H21 9Q0 sing 66 n n CBN H22 9Q0 sing 67 n n NBP H23 9Q0 sing 68 n n NBP H24 9Q0 sing 69 n n OAZ H25 9Q0 sing 70 n n OBA H26 9Q0 sing 71 n n OBC H27 9Q0 sing 72 n n OBD H28 9Q0 sing 73 n n OBE H29 9Q0 sing 74 n n OBO H30 9Q0 sing 75 n n # _atom_sites.entry_id 6A3T _atom_sites.fract_transf_matrix[1][1] 0.007276 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007276 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00895 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 9Q0 A 1 402 1 9Q0 DRG . C 3 HOH A 1 501 89 HOH HOH . C 3 HOH A 2 502 84 HOH HOH . C 3 HOH A 3 503 29 HOH HOH . C 3 HOH A 4 504 49 HOH HOH . C 3 HOH A 5 505 64 HOH HOH . C 3 HOH A 6 506 74 HOH HOH . C 3 HOH A 7 507 12 HOH HOH . C 3 HOH A 8 508 76 HOH HOH . C 3 HOH A 9 509 51 HOH HOH . C 3 HOH A 10 510 91 HOH HOH . C 3 HOH A 11 511 66 HOH HOH . C 3 HOH A 12 512 39 HOH HOH . C 3 HOH A 13 513 20 HOH HOH . C 3 HOH A 14 514 2 HOH HOH . C 3 HOH A 15 515 50 HOH HOH . C 3 HOH A 16 516 36 HOH HOH . C 3 HOH A 17 517 24 HOH HOH . C 3 HOH A 18 518 15 HOH HOH . C 3 HOH A 19 519 32 HOH HOH . C 3 HOH A 20 520 46 HOH HOH . C 3 HOH A 21 521 23 HOH HOH . C 3 HOH A 22 522 4 HOH HOH . C 3 HOH A 23 523 48 HOH HOH . C 3 HOH A 24 524 55 HOH HOH . C 3 HOH A 25 525 19 HOH HOH . C 3 HOH A 26 526 35 HOH HOH . C 3 HOH A 27 527 22 HOH HOH . C 3 HOH A 28 528 65 HOH HOH . C 3 HOH A 29 529 8 HOH HOH . C 3 HOH A 30 530 60 HOH HOH . C 3 HOH A 31 531 43 HOH HOH . C 3 HOH A 32 532 100 HOH HOH . C 3 HOH A 33 533 21 HOH HOH . C 3 HOH A 34 534 62 HOH HOH . C 3 HOH A 35 535 6 HOH HOH . C 3 HOH A 36 536 90 HOH HOH . C 3 HOH A 37 537 7 HOH HOH . C 3 HOH A 38 538 41 HOH HOH . C 3 HOH A 39 539 1 HOH HOH . C 3 HOH A 40 540 87 HOH HOH . C 3 HOH A 41 541 11 HOH HOH . C 3 HOH A 42 542 28 HOH HOH . C 3 HOH A 43 543 45 HOH HOH . C 3 HOH A 44 544 78 HOH HOH . C 3 HOH A 45 545 40 HOH HOH . C 3 HOH A 46 546 44 HOH HOH . C 3 HOH A 47 547 5 HOH HOH . C 3 HOH A 48 548 61 HOH HOH . C 3 HOH A 49 549 18 HOH HOH . C 3 HOH A 50 550 53 HOH HOH . C 3 HOH A 51 551 13 HOH HOH . C 3 HOH A 52 552 81 HOH HOH . C 3 HOH A 53 553 33 HOH HOH . C 3 HOH A 54 554 73 HOH HOH . C 3 HOH A 55 555 9 HOH HOH . C 3 HOH A 56 556 58 HOH HOH . C 3 HOH A 57 557 67 HOH HOH . C 3 HOH A 58 558 85 HOH HOH . C 3 HOH A 59 559 14 HOH HOH . C 3 HOH A 60 560 68 HOH HOH . C 3 HOH A 61 561 38 HOH HOH . C 3 HOH A 62 562 83 HOH HOH . C 3 HOH A 63 563 52 HOH HOH . C 3 HOH A 64 564 54 HOH HOH . C 3 HOH A 65 565 25 HOH HOH . C 3 HOH A 66 566 56 HOH HOH . C 3 HOH A 67 567 16 HOH HOH . C 3 HOH A 68 568 34 HOH HOH . C 3 HOH A 69 569 79 HOH HOH . C 3 HOH A 70 570 27 HOH HOH . C 3 HOH A 71 571 31 HOH HOH . C 3 HOH A 72 572 107 HOH HOH . C 3 HOH A 73 573 57 HOH HOH . C 3 HOH A 74 574 47 HOH HOH . C 3 HOH A 75 575 88 HOH HOH . C 3 HOH A 76 576 103 HOH HOH . C 3 HOH A 77 577 92 HOH HOH . C 3 HOH A 78 578 86 HOH HOH . C 3 HOH A 79 579 109 HOH HOH . C 3 HOH A 80 580 82 HOH HOH . C 3 HOH A 81 581 95 HOH HOH . C 3 HOH A 82 582 110 HOH HOH . C 3 HOH A 83 583 105 HOH HOH . C 3 HOH A 84 584 70 HOH HOH . C 3 HOH A 85 585 96 HOH HOH . C 3 HOH A 86 586 93 HOH HOH . C 3 HOH A 87 587 99 HOH HOH . C 3 HOH A 88 588 102 HOH HOH . C 3 HOH A 89 589 111 HOH HOH . C 3 HOH A 90 590 98 HOH HOH . C 3 HOH A 91 591 112 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C4 9Q0 . . . B 2 31.771 -8.878 23.666 1 35.87 ? C4 9Q0 402 A 1 HETATM 2 C C6 9Q0 . . . B 2 29.129 -8.521 27.584 1 36.1 ? C6 9Q0 402 A 1 HETATM 3 C C11 9Q0 . . . B 2 29.375 -8.857 23.502 1 30.04 ? C11 9Q0 402 A 1 HETATM 4 C C7 9Q0 . . . B 2 27.902 -8.741 28.207 1 40.86 ? C7 9Q0 402 A 1 HETATM 5 C C8 9Q0 . . . B 2 26.763 -8.969 27.425 1 41.07 ? C8 9Q0 402 A 1 HETATM 6 C C9 9Q0 . . . B 2 26.846 -8.971 26.041 1 30.06 ? C9 9Q0 402 A 1 HETATM 7 N N1 9Q0 . . . B 2 29.462 -9.166 22.158 1 27.25 ? N1 9Q0 402 A 1 HETATM 8 N N3 9Q0 . . . B 2 31.865 -9.176 22.309 1 29.72 ? N3 9Q0 402 A 1 HETATM 9 C C2 9Q0 . . . B 2 30.701 -9.32 21.555 1 32.31 ? C2 9Q0 402 A 1 HETATM 10 C C4A 9Q0 . . . B 2 30.521 -8.74 24.284 1 33.37 ? C4A 9Q0 402 A 1 HETATM 11 C C5A 9Q0 . . . B 2 29.225 -8.571 26.201 1 35.18 ? C5A 9Q0 402 A 1 HETATM 12 C C9A 9Q0 . . . B 2 28.069 -8.755 25.418 1 41.34 ? C9A 9Q0 402 A 1 HETATM 13 C CAA 9Q0 . . . B 2 27.821 -8.734 29.604 1 33.05 ? CAA 9Q0 402 A 1 HETATM 14 C CAH 9Q0 . . . B 2 25.522 -9.193 28.018 1 42.88 ? CAH 9Q0 402 A 1 HETATM 15 C CAS 9Q0 . . . B 2 26.934 -8.945 23.223 1 25.53 ? CAS 9Q0 402 A 1 HETATM 16 C CAT 9Q0 . . . B 2 26.489 -10.433 23.054 1 31.96 ? CAT 9Q0 402 A 1 HETATM 17 C CAU 9Q0 . . . B 2 25.185 -10.516 22.249 1 29.09 ? CAU 9Q0 402 A 1 HETATM 18 C CAV 9Q0 . . . B 2 24.003 -10.016 23.061 1 34.2 ? CAV 9Q0 402 A 1 HETATM 19 C CAW 9Q0 . . . B 2 22.788 -10.851 22.603 1 26.83 ? CAW 9Q0 402 A 1 HETATM 20 C CBF 9Q0 . . . B 2 31.753 -6.234 26.666 1 69 ? CBF 9Q0 402 A 1 HETATM 21 C CBG 9Q0 . . . B 2 30.846 -6.719 25.689 1 59.33 ? CBG 9Q0 402 A 1 HETATM 22 C CBH 9Q0 . . . B 2 29.74 -5.621 25.869 1 62.86 ? CBH 9Q0 402 A 1 HETATM 23 C CBJ 9Q0 . . . B 2 32.959 -5.701 26.216 1 55.98 ? CBJ 9Q0 402 A 1 HETATM 24 C CBK 9Q0 . . . B 2 33.869 -5.135 27.116 1 66.92 ? CBK 9Q0 402 A 1 HETATM 25 C CBL 9Q0 . . . B 2 33.578 -5.037 28.473 1 53.72 ? CBL 9Q0 402 A 1 HETATM 26 C CBM 9Q0 . . . B 2 32.35 -5.51 28.919 1 65.04 ? CBM 9Q0 402 A 1 HETATM 27 C CBN 9Q0 . . . B 2 31.439 -6.08 28.024 1 77.14 ? CBN 9Q0 402 A 1 HETATM 28 N N10 9Q0 . . . B 2 28.153 -8.767 24.058 1 36.81 ? N10 9Q0 402 A 1 HETATM 29 N N5 9Q0 . . . B 2 30.347 -8.287 25.544 1 39.41 ? N5 9Q0 402 A 1 HETATM 30 N NBP 9Q0 . . . B 2 29.934 -4.556 25.075 1 63.4 ? NBP 9Q0 402 A 1 HETATM 31 O O2 9Q0 . . . B 2 30.765 -9.595 20.354 1 35.38 ? O2 9Q0 402 A 1 HETATM 32 O O4 9Q0 . . . B 2 32.818 -8.751 24.3 1 41.02 ? O4 9Q0 402 A 1 HETATM 33 O OAX 9Q0 . . . B 2 21.67 -10.477 23.37 1 29.98 ? OAX 9Q0 402 A 1 HETATM 34 O OAZ 9Q0 . . . B 2 19.693 -10.797 24.779 1 30.96 ? OAZ 9Q0 402 A 1 HETATM 35 O OBA 9Q0 . . . B 2 21.982 -11.199 25.746 1 26.02 ? OBA 9Q0 402 A 1 HETATM 36 O OBB 9Q0 . . . B 2 21.044 -12.831 24.054 1 33.62 ? OBB 9Q0 402 A 1 HETATM 37 O OBC 9Q0 . . . B 2 24.272 -10.233 24.451 1 32.88 ? OBC 9Q0 402 A 1 HETATM 38 O OBD 9Q0 . . . B 2 25.243 -9.735 21.035 1 32.16 ? OBD 9Q0 402 A 1 HETATM 39 O OBE 9Q0 . . . B 2 27.492 -11.236 22.383 1 29.72 ? OBE 9Q0 402 A 1 HETATM 40 O OBI 9Q0 . . . B 2 28.874 -5.617 26.754 1 64.28 ? OBI 9Q0 402 A 1 HETATM 41 O OBO 9Q0 . . . B 2 31.437 -6.17 24.482 1 41.64 ? OBO 9Q0 402 A 1 HETATM 42 P PAY 9Q0 . . . B 2 21.012 -11.414 24.494 1 33.21 ? PAY 9Q0 402 A 1 # _model_server_stats.io_time_ms 39 _model_server_stats.parse_time_ms 20 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 278 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 42 #