data_6A46 # _model_server_result.job_id h7sZ_sEVMfkrpP3uZW7j8g _model_server_result.datetime_utc '2025-08-25 20:13:06' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6a46 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":302}' # _entry.id 6A46 # _exptl.entry_id 6A46 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 24.305 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 100.76 _cell.angle_gamma 90 _cell.entry_id 6A46 _cell.length_a 43.808 _cell.length_b 54.773 _cell.length_c 88.716 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6A46 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N ? 2 H N N ? 2 I N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASP 34 A ASP 14 1_555 C MG MG . A MG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.79 ? metalc ? metalc2 A OD2 ASP 34 A ASP 14 1_555 D MG MG . A MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.963 ? metalc ? metalc3 A OE1 GLU 36 A GLU 16 1_555 D MG MG . A MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.123 ? metalc ? metalc4 A OD2 ASP 213 A ASP 193 1_555 D MG MG . A MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.89 ? metalc ? metalc5 C MG MG . A MG 301 1_555 E O1P DCM . A DCM 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.748 ? metalc ? metalc6 C MG MG . A MG 301 1_555 L O HOH . A HOH 407 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.177 ? metalc ? metalc7 C MG MG . A MG 301 1_555 L O HOH . A HOH 412 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.177 ? metalc ? metalc8 C MG MG . A MG 301 1_555 L O HOH . A HOH 430 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.18 ? metalc ? metalc9 C MG MG . A MG 301 1_555 L O HOH . A HOH 457 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.178 ? metalc ? metalc10 D MG MG . A MG 302 1_555 E O1P DCM . A DCM 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.734 ? metalc ? metalc11 D MG MG . A MG 302 1_555 E O2P DCM . A DCM 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.967 ? metalc ? metalc12 B OD1 ASP 34 B ASP 14 1_555 H MG MG . B MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.836 ? metalc ? metalc13 B OD1 ASP 34 B ASP 14 1_555 I MG MG . B MG 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.88 ? metalc ? metalc14 B OD2 ASP 34 B ASP 14 1_555 I MG MG . B MG 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.939 ? metalc ? metalc15 B OE2 GLU 36 B GLU 16 1_555 I MG MG . B MG 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.063 ? metalc ? metalc16 B OD2 ASP 213 B ASP 193 1_555 I MG MG . B MG 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.946 ? metalc ? metalc17 G O3P DCM . B DCM 301 1_555 H MG MG . B MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.929 ? metalc ? metalc18 G O3P DCM . B DCM 301 1_555 I MG MG . B MG 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.815 ? metalc ? metalc19 H MG MG . B MG 302 1_555 M O HOH . B HOH 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.179 ? metalc ? metalc20 H MG MG . B MG 302 1_555 M O HOH . B HOH 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.179 ? metalc ? metalc21 H MG MG . B MG 302 1_555 M O HOH . B HOH 409 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.179 ? metalc ? metalc22 H MG MG . B MG 302 1_555 M O HOH . B HOH 414 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.177 ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 6A46 _atom_sites.fract_transf_matrix[1][1] 0.022827 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.004337 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018257 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011474 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 MG A 1 301 1 MG MO6 . D 2 MG A 1 302 1 MG MG . E 3 DCM A 1 303 2 DCM DCM . F 4 CA A 1 304 1 CA CA . G 3 DCM B 1 301 3 DCM DCM . H 2 MG B 1 302 1 MG MO6 . I 2 MG B 1 303 1 MG MG . J 4 CA B 1 304 1 CA CA . K 4 CA B 1 305 2 CA CA . L 5 HOH A 1 401 75 HOH HOH . L 5 HOH A 2 402 36 HOH HOH . L 5 HOH A 3 403 96 HOH HOH . L 5 HOH A 4 404 97 HOH HOH . L 5 HOH A 5 405 50 HOH HOH . L 5 HOH A 6 406 12 HOH HOH . L 5 HOH A 7 407 1 HOH MO6 . L 5 HOH A 8 408 78 HOH HOH . L 5 HOH A 9 409 92 HOH HOH . L 5 HOH A 10 410 13 HOH HOH . L 5 HOH A 11 411 46 HOH HOH . L 5 HOH A 12 412 1 HOH MO6 . L 5 HOH A 13 413 102 HOH HOH . L 5 HOH A 14 414 49 HOH HOH . L 5 HOH A 15 415 14 HOH HOH . L 5 HOH A 16 416 38 HOH HOH . L 5 HOH A 17 417 18 HOH HOH . L 5 HOH A 18 418 43 HOH HOH . L 5 HOH A 19 419 62 HOH HOH . L 5 HOH A 20 420 98 HOH HOH . L 5 HOH A 21 421 56 HOH HOH . L 5 HOH A 22 422 5 HOH HOH . L 5 HOH A 23 423 27 HOH HOH . L 5 HOH A 24 424 35 HOH HOH . L 5 HOH A 25 425 51 HOH HOH . L 5 HOH A 26 426 44 HOH HOH . L 5 HOH A 27 427 2 HOH HOH . L 5 HOH A 28 428 87 HOH HOH . L 5 HOH A 29 429 11 HOH HOH . L 5 HOH A 30 430 1 HOH MO6 . L 5 HOH A 31 431 70 HOH HOH . L 5 HOH A 32 432 59 HOH HOH . L 5 HOH A 33 433 30 HOH HOH . L 5 HOH A 34 434 84 HOH HOH . L 5 HOH A 35 435 10 HOH HOH . L 5 HOH A 36 436 52 HOH HOH . L 5 HOH A 37 437 67 HOH HOH . L 5 HOH A 38 438 24 HOH HOH . L 5 HOH A 39 439 93 HOH HOH . L 5 HOH A 40 440 47 HOH HOH . L 5 HOH A 41 441 45 HOH HOH . L 5 HOH A 42 442 39 HOH HOH . L 5 HOH A 43 443 61 HOH HOH . L 5 HOH A 44 444 74 HOH HOH . L 5 HOH A 45 445 90 HOH HOH . L 5 HOH A 46 446 37 HOH HOH . L 5 HOH A 47 447 25 HOH HOH . L 5 HOH A 48 448 71 HOH HOH . L 5 HOH A 49 449 57 HOH HOH . L 5 HOH A 50 450 82 HOH HOH . L 5 HOH A 51 451 8 HOH HOH . L 5 HOH A 52 452 100 HOH HOH . L 5 HOH A 53 453 48 HOH HOH . L 5 HOH A 54 454 32 HOH HOH . L 5 HOH A 55 455 17 HOH HOH . L 5 HOH A 56 456 103 HOH HOH . L 5 HOH A 57 457 1 HOH MO6 . L 5 HOH A 58 458 99 HOH HOH . L 5 HOH A 59 459 41 HOH HOH . L 5 HOH A 60 460 85 HOH HOH . L 5 HOH A 61 461 20 HOH HOH . L 5 HOH A 62 462 34 HOH HOH . L 5 HOH A 63 463 58 HOH HOH . L 5 HOH A 64 464 23 HOH HOH . L 5 HOH A 65 465 15 HOH HOH . L 5 HOH A 66 466 60 HOH HOH . L 5 HOH A 67 467 29 HOH HOH . L 5 HOH A 68 468 31 HOH HOH . L 5 HOH A 69 469 86 HOH HOH . L 5 HOH A 70 470 76 HOH HOH . L 5 HOH A 71 471 88 HOH HOH . L 5 HOH A 72 472 54 HOH HOH . L 5 HOH A 73 473 55 HOH HOH . L 5 HOH A 74 474 73 HOH HOH . L 5 HOH A 75 475 83 HOH HOH . L 5 HOH A 76 476 79 HOH HOH . L 5 HOH A 77 477 64 HOH HOH . L 5 HOH A 78 478 94 HOH HOH . M 5 HOH B 1 401 1 HOH MO6 . M 5 HOH B 2 402 33 HOH HOH . M 5 HOH B 3 403 65 HOH HOH . M 5 HOH B 4 404 1 HOH MO6 . M 5 HOH B 5 405 77 HOH HOH . M 5 HOH B 6 406 53 HOH HOH . M 5 HOH B 7 407 28 HOH HOH . M 5 HOH B 8 408 95 HOH HOH . M 5 HOH B 9 409 1 HOH MO6 . M 5 HOH B 10 410 42 HOH HOH . M 5 HOH B 11 411 1 HOH HOH . M 5 HOH B 12 412 22 HOH HOH . M 5 HOH B 13 413 72 HOH HOH . M 5 HOH B 14 414 1 HOH MO6 . M 5 HOH B 15 415 69 HOH HOH . M 5 HOH B 16 416 80 HOH HOH . M 5 HOH B 17 417 40 HOH HOH . M 5 HOH B 18 418 101 HOH HOH . M 5 HOH B 19 419 9 HOH HOH . M 5 HOH B 20 420 63 HOH HOH . M 5 HOH B 21 421 26 HOH HOH . M 5 HOH B 22 422 6 HOH HOH . M 5 HOH B 23 423 4 HOH HOH . M 5 HOH B 24 424 81 HOH HOH . M 5 HOH B 25 425 66 HOH HOH . M 5 HOH B 26 426 21 HOH HOH . M 5 HOH B 27 427 19 HOH HOH . M 5 HOH B 28 428 3 HOH HOH . M 5 HOH B 29 429 16 HOH HOH . M 5 HOH B 30 430 91 HOH HOH . M 5 HOH B 31 431 7 HOH HOH . M 5 HOH B 32 432 89 HOH HOH . M 5 HOH B 33 433 68 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 2 _atom_site.Cartn_x 1.1 _atom_site.Cartn_y 11.835 _atom_site.Cartn_z 15.577 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 20.09 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 302 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 83 _model_server_stats.parse_time_ms 21 _model_server_stats.create_model_time_ms 28 _model_server_stats.query_time_ms 304 _model_server_stats.encode_time_ms 14 _model_server_stats.element_count 1 #