data_6A4G # _model_server_result.job_id mrCmgyfF-SiSyH90UGYWAw _model_server_result.datetime_utc '2024-11-08 07:13:30' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6a4g # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":402}' # _entry.id 6A4G # _exptl.entry_id 6A4G _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 474.359 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1-deoxy-1-[(4aS)-4a-hydroxy-7,8-dimethyl-2,4-dioxo-3,4,4a,5-tetrahydrobenzo[g]pteridin-10(2H)-yl]-5-O-phosphono-D-ribitol _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6A4G _cell.length_a 138.966 _cell.length_b 138.966 _cell.length_c 107.171 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6A4G _symmetry.cell_setting ? _symmetry.Int_Tables_number 97 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 4 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x,-y,z -1 0 0 0 -1 0 0 0 1 0 0 0 3 'crystal symmetry operation' 3_555 -y,x,z 0 -1 0 1 0 0 0 0 1 0 0 0 4 'crystal symmetry operation' 4_555 y,-x,z 0 1 0 -1 0 0 0 0 1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C17 H23 N4 O10 P' _chem_comp.formula_weight 474.359 _chem_comp.id 9Q6 _chem_comp.mon_nstd_flag . _chem_comp.name 1-deoxy-1-[(4aS)-4a-hydroxy-7,8-dimethyl-2,4-dioxo-3,4,4a,5-tetrahydrobenzo[g]pteridin-10(2H)-yl]-5-O-phosphono-D-ribitol _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag OAM CAL 9Q6 doub 1 n n OBD CAU 9Q6 sing 2 n n CAL NAN 9Q6 sing 3 n n CAL NAK 9Q6 sing 4 n n NAN CAO 9Q6 sing 5 n n NAK CAJ 9Q6 doub 6 n n OBE CAT 9Q6 sing 7 n n CAU CAT 9Q6 sing 8 n n CAU CAV 9Q6 sing 9 n n CAW CAV 9Q6 sing 10 n n CAW OAX 9Q6 sing 11 n n CAT CAS 9Q6 sing 12 n n CAV OBC 9Q6 sing 13 n n CAS NAI 9Q6 sing 14 n n OAX PAY 9Q6 sing 15 n n CAJ NAI 9Q6 sing 16 n n CAJ CAQ 9Q6 sing 17 n n CAO OAP 9Q6 doub 18 n n CAO CAQ 9Q6 sing 19 n n NAI CAE 9Q6 sing 20 n n OBB PAY 9Q6 doub 21 n n CAQ OBF 9Q6 sing 22 n n CAQ NAR 9Q6 sing 23 n n PAY OBA 9Q6 sing 24 n n PAY OAZ 9Q6 sing 25 n n CAE CAF 9Q6 sing 26 n y CAE CAD 9Q6 doub 27 n y NAR CAD 9Q6 sing 28 n n CAF CAG 9Q6 doub 29 n y CAD CAC 9Q6 sing 30 n y CAG CAH 9Q6 sing 31 n n CAG CAB 9Q6 sing 32 n y CAC CAB 9Q6 doub 33 n y CAB CAA 9Q6 sing 34 n n CAA H1 9Q6 sing 35 n n CAA H2 9Q6 sing 36 n n CAA H3 9Q6 sing 37 n n CAC H4 9Q6 sing 38 n n CAF H5 9Q6 sing 39 n n CAH H6 9Q6 sing 40 n n CAH H7 9Q6 sing 41 n n CAH H8 9Q6 sing 42 n n CAS H9 9Q6 sing 43 n n CAS H10 9Q6 sing 44 n n CAT H11 9Q6 sing 45 n n CAU H12 9Q6 sing 46 n n CAV H13 9Q6 sing 47 n n CAW H14 9Q6 sing 48 n n CAW H15 9Q6 sing 49 n n NAN H16 9Q6 sing 50 n n NAR H17 9Q6 sing 51 n n OAZ H18 9Q6 sing 52 n n OBA H19 9Q6 sing 53 n n OBC H20 9Q6 sing 54 n n OBD H21 9Q6 sing 55 n n OBE H22 9Q6 sing 56 n n OBF H23 9Q6 sing 57 n n # _atom_sites.entry_id 6A4G _atom_sites.fract_transf_matrix[1][1] 0.007196 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007196 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009331 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 9Q6 A 1 402 1 9Q6 DRG . C 3 HOH A 1 501 93 HOH HOH . C 3 HOH A 2 502 98 HOH HOH . C 3 HOH A 3 503 97 HOH HOH . C 3 HOH A 4 504 105 HOH HOH . C 3 HOH A 5 505 9 HOH HOH . C 3 HOH A 6 506 51 HOH HOH . C 3 HOH A 7 507 108 HOH HOH . C 3 HOH A 8 508 85 HOH HOH . C 3 HOH A 9 509 46 HOH HOH . C 3 HOH A 10 510 28 HOH HOH . C 3 HOH A 11 511 147 HOH HOH . C 3 HOH A 12 512 64 HOH HOH . C 3 HOH A 13 513 21 HOH HOH . C 3 HOH A 14 514 70 HOH HOH . C 3 HOH A 15 515 149 HOH HOH . C 3 HOH A 16 516 77 HOH HOH . C 3 HOH A 17 517 50 HOH HOH . C 3 HOH A 18 518 155 HOH HOH . C 3 HOH A 19 519 67 HOH HOH . C 3 HOH A 20 520 83 HOH HOH . C 3 HOH A 21 521 7 HOH HOH . C 3 HOH A 22 522 14 HOH HOH . C 3 HOH A 23 523 2 HOH HOH . C 3 HOH A 24 524 54 HOH HOH . C 3 HOH A 25 525 34 HOH HOH . C 3 HOH A 26 526 3 HOH HOH . C 3 HOH A 27 527 47 HOH HOH . C 3 HOH A 28 528 60 HOH HOH . C 3 HOH A 29 529 23 HOH HOH . C 3 HOH A 30 530 31 HOH HOH . C 3 HOH A 31 531 5 HOH HOH . C 3 HOH A 32 532 103 HOH HOH . C 3 HOH A 33 533 49 HOH HOH . C 3 HOH A 34 534 44 HOH HOH . C 3 HOH A 35 535 114 HOH HOH . C 3 HOH A 36 536 59 HOH HOH . C 3 HOH A 37 537 16 HOH HOH . C 3 HOH A 38 538 38 HOH HOH . C 3 HOH A 39 539 36 HOH HOH . C 3 HOH A 40 540 82 HOH HOH . C 3 HOH A 41 541 87 HOH HOH . C 3 HOH A 42 542 71 HOH HOH . C 3 HOH A 43 543 11 HOH HOH . C 3 HOH A 44 544 26 HOH HOH . C 3 HOH A 45 545 22 HOH HOH . C 3 HOH A 46 546 121 HOH HOH . C 3 HOH A 47 547 123 HOH HOH . C 3 HOH A 48 548 78 HOH HOH . C 3 HOH A 49 549 37 HOH HOH . C 3 HOH A 50 550 63 HOH HOH . C 3 HOH A 51 551 76 HOH HOH . C 3 HOH A 52 552 27 HOH HOH . C 3 HOH A 53 553 25 HOH HOH . C 3 HOH A 54 554 45 HOH HOH . C 3 HOH A 55 555 15 HOH HOH . C 3 HOH A 56 556 19 HOH HOH . C 3 HOH A 57 557 94 HOH HOH . C 3 HOH A 58 558 57 HOH HOH . C 3 HOH A 59 559 146 HOH HOH . C 3 HOH A 60 560 69 HOH HOH . C 3 HOH A 61 561 12 HOH HOH . C 3 HOH A 62 562 90 HOH HOH . C 3 HOH A 63 563 53 HOH HOH . C 3 HOH A 64 564 119 HOH HOH . C 3 HOH A 65 565 75 HOH HOH . C 3 HOH A 66 566 13 HOH HOH . C 3 HOH A 67 567 66 HOH HOH . C 3 HOH A 68 568 164 HOH HOH . C 3 HOH A 69 569 43 HOH HOH . C 3 HOH A 70 570 20 HOH HOH . C 3 HOH A 71 571 39 HOH HOH . C 3 HOH A 72 572 91 HOH HOH . C 3 HOH A 73 573 6 HOH HOH . C 3 HOH A 74 574 42 HOH HOH . C 3 HOH A 75 575 10 HOH HOH . C 3 HOH A 76 576 152 HOH HOH . C 3 HOH A 77 577 104 HOH HOH . C 3 HOH A 78 578 117 HOH HOH . C 3 HOH A 79 579 107 HOH HOH . C 3 HOH A 80 580 32 HOH HOH . C 3 HOH A 81 581 101 HOH HOH . C 3 HOH A 82 582 72 HOH HOH . C 3 HOH A 83 583 134 HOH HOH . C 3 HOH A 84 584 112 HOH HOH . C 3 HOH A 85 585 81 HOH HOH . C 3 HOH A 86 586 4 HOH HOH . C 3 HOH A 87 587 8 HOH HOH . C 3 HOH A 88 588 125 HOH HOH . C 3 HOH A 89 589 56 HOH HOH . C 3 HOH A 90 590 29 HOH HOH . C 3 HOH A 91 591 18 HOH HOH . C 3 HOH A 92 592 141 HOH HOH . C 3 HOH A 93 593 110 HOH HOH . C 3 HOH A 94 594 138 HOH HOH . C 3 HOH A 95 595 160 HOH HOH . C 3 HOH A 96 596 102 HOH HOH . C 3 HOH A 97 597 127 HOH HOH . C 3 HOH A 98 598 62 HOH HOH . C 3 HOH A 99 599 73 HOH HOH . C 3 HOH A 100 600 161 HOH HOH . C 3 HOH A 101 601 111 HOH HOH . C 3 HOH A 102 602 165 HOH HOH . C 3 HOH A 103 603 30 HOH HOH . C 3 HOH A 104 604 144 HOH HOH . C 3 HOH A 105 605 122 HOH HOH . C 3 HOH A 106 606 55 HOH HOH . C 3 HOH A 107 607 157 HOH HOH . C 3 HOH A 108 608 35 HOH HOH . C 3 HOH A 109 609 115 HOH HOH . C 3 HOH A 110 610 65 HOH HOH . C 3 HOH A 111 611 113 HOH HOH . C 3 HOH A 112 612 136 HOH HOH . C 3 HOH A 113 613 48 HOH HOH . C 3 HOH A 114 614 135 HOH HOH . C 3 HOH A 115 615 156 HOH HOH . C 3 HOH A 116 616 118 HOH HOH . C 3 HOH A 117 617 68 HOH HOH . C 3 HOH A 118 618 79 HOH HOH . C 3 HOH A 119 619 154 HOH HOH . C 3 HOH A 120 620 158 HOH HOH . C 3 HOH A 121 621 100 HOH HOH . C 3 HOH A 122 622 151 HOH HOH . C 3 HOH A 123 623 86 HOH HOH . C 3 HOH A 124 624 162 HOH HOH . C 3 HOH A 125 625 145 HOH HOH . C 3 HOH A 126 626 116 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CAA 9Q6 . . . B 2 28.01 -8.867 29.541 1 57.92 ? CAA 9Q6 402 A 1 HETATM 2 C CAB 9Q6 . . . B 2 28.054 -8.894 28.149 1 54.53 ? CAB 9Q6 402 A 1 HETATM 3 C CAC 9Q6 . . . B 2 29.279 -8.907 27.497 1 45.8 ? CAC 9Q6 402 A 1 HETATM 4 C CAD 9Q6 . . . B 2 29.323 -8.936 26.107 1 52.56 ? CAD 9Q6 402 A 1 HETATM 5 C CAE 9Q6 . . . B 2 28.147 -8.921 25.353 1 49.57 ? CAE 9Q6 402 A 1 HETATM 6 C CAF 9Q6 . . . B 2 26.928 -8.941 26.016 1 45.74 ? CAF 9Q6 402 A 1 HETATM 7 C CAG 9Q6 . . . B 2 26.88 -8.912 27.404 1 47.59 ? CAG 9Q6 402 A 1 HETATM 8 C CAH 9Q6 . . . B 2 25.644 -8.902 28.031 1 54.59 ? CAH 9Q6 402 A 1 HETATM 9 C CAJ 9Q6 . . . B 2 29.358 -8.943 23.357 1 51.15 ? CAJ 9Q6 402 A 1 HETATM 10 C CAL 9Q6 . . . B 2 30.517 -8.981 21.327 1 52.39 ? CAL 9Q6 402 A 1 HETATM 11 C CAO 9Q6 . . . B 2 31.7 -8.705 23.408 1 56.51 ? CAO 9Q6 402 A 1 HETATM 12 C CAQ 9Q6 . . . B 2 30.497 -8.576 24.074 1 55.01 ? CAQ 9Q6 402 A 1 HETATM 13 C CAS 9Q6 . . . B 2 26.914 -9.184 23.232 1 35.29 ? CAS 9Q6 402 A 1 HETATM 14 C CAT 9Q6 . . . B 2 26.621 -10.654 22.902 1 33.45 ? CAT 9Q6 402 A 1 HETATM 15 C CAU 9Q6 . . . B 2 25.261 -10.798 22.205 1 33.5 ? CAU 9Q6 402 A 1 HETATM 16 C CAV 9Q6 . . . B 2 24.104 -10.469 23.143 1 44.64 ? CAV 9Q6 402 A 1 HETATM 17 C CAW 9Q6 . . . B 2 22.85 -11.132 22.57 1 30.25 ? CAW 9Q6 402 A 1 HETATM 18 N NAI 9Q6 . . . B 2 28.18 -8.987 24.005 1 47.84 ? NAI 9Q6 402 A 1 HETATM 19 N NAK 9Q6 . . . B 2 29.371 -9.049 22.016 1 43.43 ? NAK 9Q6 402 A 1 HETATM 20 N NAN 9Q6 . . . B 2 31.72 -8.799 22.013 1 52.38 ? NAN 9Q6 402 A 1 HETATM 21 N NAR 9Q6 . . . B 2 30.507 -8.95 25.486 1 46.5 ? NAR 9Q6 402 A 1 HETATM 22 O OAM 9Q6 . . . B 2 30.514 -9.1 20.101 1 54.71 ? OAM 9Q6 402 A 1 HETATM 23 O OAP 9Q6 . . . B 2 32.75 -8.495 24.014 1 68.33 ? OAP 9Q6 402 A 1 HETATM 24 O OAX 9Q6 . . . B 2 21.717 -10.734 23.326 1 39.27 ? OAX 9Q6 402 A 1 HETATM 25 O OAZ 9Q6 . . . B 2 22.074 -11.498 25.785 1 35.02 ? OAZ 9Q6 402 A 1 HETATM 26 O OBA 9Q6 . . . B 2 19.701 -11.156 24.829 1 35.38 ? OBA 9Q6 402 A 1 HETATM 27 O OBB 9Q6 . . . B 2 21.134 -13.161 24.067 1 34.16 ? OBB 9Q6 402 A 1 HETATM 28 O OBC 9Q6 . . . B 2 24.365 -10.972 24.455 1 43.23 ? OBC 9Q6 402 A 1 HETATM 29 O OBD 9Q6 . . . B 2 25.186 -9.917 21.08 1 34.91 ? OBD 9Q6 402 A 1 HETATM 30 O OBE 9Q6 . . . B 2 27.624 -11.151 22.02 1 30.06 ? OBE 9Q6 402 A 1 HETATM 31 O OBF 9Q6 . . . B 2 30.387 -7.152 24.169 1 63.6 ? OBF 9Q6 402 A 1 HETATM 32 P PAY 9Q6 . . . B 2 21.224 -11.623 24.571 1 37.03 ? PAY 9Q6 402 A 1 # _model_server_stats.io_time_ms 46 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 279 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 32 #