data_6A4H # _model_server_result.job_id 8g9Sf_aK4u-in0dHwHfOUQ _model_server_result.datetime_utc '2024-11-28 01:58:41' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6a4h # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 6A4H # _exptl.entry_id 6A4H _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 490.358 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '[(2~{R},3~{S},4~{S})-5-[(4~{a}~{S})-4~{a}-(dioxidanyl)-7,8-dimethyl-2,4-bis(oxidanylidene)-5~{H}-benzo[g]pteridin-10-yl]-2,3,4-tris(oxidanyl)pentyl] dihydrogen phosphate' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6A4H _cell.length_a 138.829 _cell.length_b 138.829 _cell.length_c 107.523 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6A4H _symmetry.cell_setting ? _symmetry.Int_Tables_number 97 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 4 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x,-y,z -1 0 0 0 -1 0 0 0 1 0 0 0 3 'crystal symmetry operation' 3_555 -y,x,z 0 -1 0 1 0 0 0 0 1 0 0 0 4 'crystal symmetry operation' 4_555 y,-x,z 0 1 0 -1 0 0 0 0 1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C17 H23 N4 O11 P' _chem_comp.formula_weight 490.358 _chem_comp.id 9QF _chem_comp.mon_nstd_flag . _chem_comp.name '[(2~{R},3~{S},4~{S})-5-[(4~{a}~{S})-4~{a}-(dioxidanyl)-7,8-dimethyl-2,4-bis(oxidanylidene)-5~{H}-benzo[g]pteridin-10-yl]-2,3,4-tris(oxidanyl)pentyl] dihydrogen phosphate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag OAM CAL 9QF doub 1 n n OBD CAU 9QF sing 2 n n CAL NAK 9QF sing 3 n n CAL NAN 9QF sing 4 n n NAK CAJ 9QF doub 5 n n NAN CAO 9QF sing 6 n n OBE CAT 9QF sing 7 n n CAU CAT 9QF sing 8 n n CAU CAV 9QF sing 9 n n CAW CAV 9QF sing 10 n n CAW OAX 9QF sing 11 n n CAT CAS 9QF sing 12 n n CAV OBC 9QF sing 13 n n CAS NAI 9QF sing 14 n n CAJ NAI 9QF sing 15 n n CAJ CAQ 9QF sing 16 n n OAX PAY 9QF sing 17 n n CAO CAQ 9QF sing 18 n n CAO OAP 9QF doub 19 n n NAI CAE 9QF sing 20 n n OBF CAQ 9QF sing 21 n n OBF OBG 9QF sing 22 n n CAQ NAR 9QF sing 23 n n OAZ PAY 9QF doub 24 n n PAY OBB 9QF sing 25 n n PAY OBA 9QF sing 26 n n CAE CAF 9QF sing 27 n y CAE CAD 9QF doub 28 n y NAR CAD 9QF sing 29 n n CAF CAG 9QF doub 30 n y CAD CAC 9QF sing 31 n y CAG CAH 9QF sing 32 n n CAG CAB 9QF sing 33 n y CAC CAB 9QF doub 34 n y CAB CAA 9QF sing 35 n n CAA H1 9QF sing 36 n n CAA H2 9QF sing 37 n n CAA H3 9QF sing 38 n n CAC H4 9QF sing 39 n n CAF H5 9QF sing 40 n n CAH H6 9QF sing 41 n n CAH H7 9QF sing 42 n n CAH H8 9QF sing 43 n n CAS H9 9QF sing 44 n n CAS H10 9QF sing 45 n n CAT H11 9QF sing 46 n n CAU H12 9QF sing 47 n n CAV H13 9QF sing 48 n n CAW H14 9QF sing 49 n n CAW H15 9QF sing 50 n n NAN H16 9QF sing 51 n n NAR H17 9QF sing 52 n n OBA H18 9QF sing 53 n n OBB H19 9QF sing 54 n n OBC H20 9QF sing 55 n n OBD H21 9QF sing 56 n n OBE H22 9QF sing 57 n n OBG H23 9QF sing 58 n n # _atom_sites.entry_id 6A4H _atom_sites.fract_transf_matrix[1][1] 0.007203 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007203 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.0093 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 9QF A 1 401 1 9QF DRG . C 3 HOH A 1 501 164 HOH HOH . C 3 HOH A 2 502 94 HOH HOH . C 3 HOH A 3 503 159 HOH HOH . C 3 HOH A 4 504 31 HOH HOH . C 3 HOH A 5 505 51 HOH HOH . C 3 HOH A 6 506 76 HOH HOH . C 3 HOH A 7 507 46 HOH HOH . C 3 HOH A 8 508 153 HOH HOH . C 3 HOH A 9 509 125 HOH HOH . C 3 HOH A 10 510 106 HOH HOH . C 3 HOH A 11 511 18 HOH HOH . C 3 HOH A 12 512 121 HOH HOH . C 3 HOH A 13 513 123 HOH HOH . C 3 HOH A 14 514 12 HOH HOH . C 3 HOH A 15 515 77 HOH HOH . C 3 HOH A 16 516 81 HOH HOH . C 3 HOH A 17 517 127 HOH HOH . C 3 HOH A 18 518 97 HOH HOH . C 3 HOH A 19 519 32 HOH HOH . C 3 HOH A 20 520 126 HOH HOH . C 3 HOH A 21 521 112 HOH HOH . C 3 HOH A 22 522 14 HOH HOH . C 3 HOH A 23 523 30 HOH HOH . C 3 HOH A 24 524 40 HOH HOH . C 3 HOH A 25 525 52 HOH HOH . C 3 HOH A 26 526 73 HOH HOH . C 3 HOH A 27 527 8 HOH HOH . C 3 HOH A 28 528 42 HOH HOH . C 3 HOH A 29 529 71 HOH HOH . C 3 HOH A 30 530 22 HOH HOH . C 3 HOH A 31 531 61 HOH HOH . C 3 HOH A 32 532 80 HOH HOH . C 3 HOH A 33 533 7 HOH HOH . C 3 HOH A 34 534 3 HOH HOH . C 3 HOH A 35 535 157 HOH HOH . C 3 HOH A 36 536 24 HOH HOH . C 3 HOH A 37 537 89 HOH HOH . C 3 HOH A 38 538 64 HOH HOH . C 3 HOH A 39 539 34 HOH HOH . C 3 HOH A 40 540 62 HOH HOH . C 3 HOH A 41 541 6 HOH HOH . C 3 HOH A 42 542 88 HOH HOH . C 3 HOH A 43 543 87 HOH HOH . C 3 HOH A 44 544 2 HOH HOH . C 3 HOH A 45 545 25 HOH HOH . C 3 HOH A 46 546 93 HOH HOH . C 3 HOH A 47 547 63 HOH HOH . C 3 HOH A 48 548 99 HOH HOH . C 3 HOH A 49 549 108 HOH HOH . C 3 HOH A 50 550 86 HOH HOH . C 3 HOH A 51 551 11 HOH HOH . C 3 HOH A 52 552 128 HOH HOH . C 3 HOH A 53 553 96 HOH HOH . C 3 HOH A 54 554 74 HOH HOH . C 3 HOH A 55 555 109 HOH HOH . C 3 HOH A 56 556 26 HOH HOH . C 3 HOH A 57 557 21 HOH HOH . C 3 HOH A 58 558 47 HOH HOH . C 3 HOH A 59 559 92 HOH HOH . C 3 HOH A 60 560 20 HOH HOH . C 3 HOH A 61 561 13 HOH HOH . C 3 HOH A 62 562 36 HOH HOH . C 3 HOH A 63 563 66 HOH HOH . C 3 HOH A 64 564 23 HOH HOH . C 3 HOH A 65 565 160 HOH HOH . C 3 HOH A 66 566 114 HOH HOH . C 3 HOH A 67 567 78 HOH HOH . C 3 HOH A 68 568 15 HOH HOH . C 3 HOH A 69 569 38 HOH HOH . C 3 HOH A 70 570 68 HOH HOH . C 3 HOH A 71 571 37 HOH HOH . C 3 HOH A 72 572 35 HOH HOH . C 3 HOH A 73 573 151 HOH HOH . C 3 HOH A 74 574 100 HOH HOH . C 3 HOH A 75 575 120 HOH HOH . C 3 HOH A 76 576 49 HOH HOH . C 3 HOH A 77 577 145 HOH HOH . C 3 HOH A 78 578 84 HOH HOH . C 3 HOH A 79 579 44 HOH HOH . C 3 HOH A 80 580 58 HOH HOH . C 3 HOH A 81 581 10 HOH HOH . C 3 HOH A 82 582 29 HOH HOH . C 3 HOH A 83 583 115 HOH HOH . C 3 HOH A 84 584 107 HOH HOH . C 3 HOH A 85 585 59 HOH HOH . C 3 HOH A 86 586 105 HOH HOH . C 3 HOH A 87 587 137 HOH HOH . C 3 HOH A 88 588 119 HOH HOH . C 3 HOH A 89 589 33 HOH HOH . C 3 HOH A 90 590 65 HOH HOH . C 3 HOH A 91 591 155 HOH HOH . C 3 HOH A 92 592 104 HOH HOH . C 3 HOH A 93 593 118 HOH HOH . C 3 HOH A 94 594 19 HOH HOH . C 3 HOH A 95 595 56 HOH HOH . C 3 HOH A 96 596 5 HOH HOH . C 3 HOH A 97 597 9 HOH HOH . C 3 HOH A 98 598 17 HOH HOH . C 3 HOH A 99 599 102 HOH HOH . C 3 HOH A 100 600 60 HOH HOH . C 3 HOH A 101 601 139 HOH HOH . C 3 HOH A 102 602 154 HOH HOH . C 3 HOH A 103 603 4 HOH HOH . C 3 HOH A 104 604 113 HOH HOH . C 3 HOH A 105 605 146 HOH HOH . C 3 HOH A 106 606 133 HOH HOH . C 3 HOH A 107 607 140 HOH HOH . C 3 HOH A 108 608 53 HOH HOH . C 3 HOH A 109 609 39 HOH HOH . C 3 HOH A 110 610 103 HOH HOH . C 3 HOH A 111 611 161 HOH HOH . C 3 HOH A 112 612 16 HOH HOH . C 3 HOH A 113 613 85 HOH HOH . C 3 HOH A 114 614 95 HOH HOH . C 3 HOH A 115 615 43 HOH HOH . C 3 HOH A 116 616 116 HOH HOH . C 3 HOH A 117 617 148 HOH HOH . C 3 HOH A 118 618 117 HOH HOH . C 3 HOH A 119 619 163 HOH HOH . C 3 HOH A 120 620 72 HOH HOH . C 3 HOH A 121 621 162 HOH HOH . C 3 HOH A 122 622 144 HOH HOH . C 3 HOH A 123 623 130 HOH HOH . C 3 HOH A 124 624 111 HOH HOH . C 3 HOH A 125 625 152 HOH HOH . C 3 HOH A 126 626 101 HOH HOH . C 3 HOH A 127 627 150 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CAA 9QF . . . B 2 27.985 -8.729 29.474 1 44.87 ? CAA 9QF 401 A 1 HETATM 2 C CAB 9QF . . . B 2 28.048 -8.786 28.084 1 47.92 ? CAB 9QF 401 A 1 HETATM 3 C CAC 9QF . . . B 2 29.284 -8.792 27.453 1 42.02 ? CAC 9QF 401 A 1 HETATM 4 C CAD 9QF . . . B 2 29.349 -8.85 26.064 1 49.49 ? CAD 9QF 401 A 1 HETATM 5 C CAE 9QF . . . B 2 28.19 -8.867 25.283 1 45.97 ? CAE 9QF 401 A 1 HETATM 6 C CAF 9QF . . . B 2 26.961 -8.896 25.933 1 37.43 ? CAF 9QF 401 A 1 HETATM 7 C CAG 9QF . . . B 2 26.885 -8.837 27.319 1 44.8 ? CAG 9QF 401 A 1 HETATM 8 C CAH 9QF . . . B 2 25.634 -8.832 27.927 1 51.03 ? CAH 9QF 401 A 1 HETATM 9 C CAJ 9QF . . . B 2 29.448 -8.966 23.302 1 46.64 ? CAJ 9QF 401 A 1 HETATM 10 C CAL 9QF . . . B 2 30.726 -9.065 21.242 1 48.01 ? CAL 9QF 401 A 1 HETATM 11 C CAO 9QF . . . B 2 31.806 -8.761 23.386 1 54.26 ? CAO 9QF 401 A 1 HETATM 12 C CAQ 9QF . . . B 2 30.582 -8.577 24.01 1 52.8 ? CAQ 9QF 401 A 1 HETATM 13 C CAS 9QF . . . B 2 27.008 -9.138 23.125 1 28.34 ? CAS 9QF 401 A 1 HETATM 14 C CAT 9QF . . . B 2 26.643 -10.595 22.839 1 24.53 ? CAT 9QF 401 A 1 HETATM 15 C CAU 9QF . . . B 2 25.275 -10.688 22.123 1 29.97 ? CAU 9QF 401 A 1 HETATM 16 C CAV 9QF . . . B 2 24.12 -10.234 23.005 1 40.27 ? CAV 9QF 401 A 1 HETATM 17 C CAW 9QF . . . B 2 22.893 -11.02 22.538 1 27.57 ? CAW 9QF 401 A 1 HETATM 18 N NAI 9QF . . . B 2 28.256 -8.964 23.931 1 44.37 ? NAI 9QF 401 A 1 HETATM 19 N NAK 9QF . . . B 2 29.494 -9.105 21.905 1 36.63 ? NAK 9QF 401 A 1 HETATM 20 N NAN 9QF . . . B 2 31.889 -8.895 21.994 1 47.39 ? NAN 9QF 401 A 1 HETATM 21 N NAR 9QF . . . B 2 30.588 -8.865 25.439 1 38.8 ? NAR 9QF 401 A 1 HETATM 22 O OAM 9QF . . . B 2 30.795 -9.207 20.02 1 46.61 ? OAM 9QF 401 A 1 HETATM 23 O OAP 9QF . . . B 2 32.838 -8.566 24.029 1 66.57 ? OAP 9QF 401 A 1 HETATM 24 O OAX 9QF . . . B 2 21.798 -10.649 23.343 1 34.89 ? OAX 9QF 401 A 1 HETATM 25 O OAZ 9QF . . . B 2 21.116 -13.055 24.144 1 29.98 ? OAZ 9QF 401 A 1 HETATM 26 O OBA 9QF . . . B 2 22.237 -11.423 25.802 1 30.71 ? OBA 9QF 401 A 1 HETATM 27 O OBB 9QF . . . B 2 19.842 -10.965 24.882 1 30.6 ? OBB 9QF 401 A 1 HETATM 28 O OBC 9QF . . . B 2 24.383 -10.507 24.388 1 37.54 ? OBC 9QF 401 A 1 HETATM 29 O OBD 9QF . . . B 2 25.242 -9.877 20.941 1 29.09 ? OBD 9QF 401 A 1 HETATM 30 O OBE 9QF . . . B 2 27.637 -11.166 21.997 1 25.5 ? OBE 9QF 401 A 1 HETATM 31 O OBF 9QF . . . B 2 30.434 -7.14 23.985 1 69.62 ? OBF 9QF 401 A 1 HETATM 32 O OBG 9QF . . . B 2 31.481 -6.198 24.432 1 61.16 ? OBG 9QF 401 A 1 HETATM 33 P PAY 9QF . . . B 2 21.253 -11.617 24.507 1 32.63 ? PAY 9QF 401 A 1 # _model_server_stats.io_time_ms 57 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 292 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 33 #