data_6A4I
#
_model_server_result.job_id            2EcoCWrU6WWvDSGZoUToIQ 
_model_server_result.datetime_utc      '2024-12-02 10:26:05' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6a4i 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"L","auth_seq_id":401}' 
#
_entry.id    6A4I 
#
_exptl.entry_id    6A4I 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              616.487 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'PROTOPORPHYRIN IX CONTAINING FE' 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6A4I 
_cell.length_a            156.308 
_cell.length_b            144.106 
_cell.length_c            89.002 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6A4I 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        18 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 E N N 
? 2 I N N 
? 2 L N N 
? 2 N N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A NE2 HIS 331 A HIS 328 1_555 E FE HEM . A HEM 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.897 ? 
metalc ? metalc2 E FE HEM . A HEM 401 1_555 F NAH 9R9 . A 9R9 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.096 ? 
metalc ? metalc3 B NE2 HIS 331 B HIS 328 1_555 I FE HEM . B HEM 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.874 ? 
metalc ? metalc4 I FE HEM . B HEM 401 1_555 J NAH 9R9 . B 9R9 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.054 ? 
metalc ? metalc5 C NE2 HIS 331 C HIS 328 1_555 L FE HEM . C HEM 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.963 ? 
metalc ? metalc6 L FE HEM . C HEM 401 1_555 M NAH 9R9 . C 9R9 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.083 ? 
metalc ? metalc7 D NE2 HIS 331 D HIS 328 1_555 N FE HEM . D HEM 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.1 ? 
metalc ? metalc8 N FE HEM . D HEM 401 1_555 O NAH 9R9 . D 9R9 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.073 ? 
#
_chem_comp.formula           'C34 H32 Fe N4 O4' 
_chem_comp.formula_weight    616.487 
_chem_comp.id                HEM 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'PROTOPORPHYRIN IX CONTAINING FE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     HEME 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CHA C1A HEM sing 183 n n 
CHA C4D HEM doub 184 n n 
CHA HHA HEM sing 185 n n 
CHB C4A HEM sing 186 n n 
CHB C1B HEM doub 187 n n 
CHB HHB HEM sing 188 n n 
CHC C4B HEM sing 189 n n 
CHC C1C HEM doub 190 n n 
CHC HHC HEM sing 191 n n 
CHD C4C HEM doub 192 n n 
CHD C1D HEM sing 193 n n 
CHD HHD HEM sing 194 n n 
C1A C2A HEM doub 195 n y 
C1A NA HEM sing 196 n y 
C2A C3A HEM sing 197 n y 
C2A CAA HEM sing 198 n n 
C3A C4A HEM doub 199 n y 
C3A CMA HEM sing 200 n n 
C4A NA HEM sing 201 n y 
CMA HMA HEM sing 202 n n 
CMA HMAA HEM sing 203 n n 
CMA HMAB HEM sing 204 n n 
CAA CBA HEM sing 205 n n 
CAA HAA HEM sing 206 n n 
CAA HAAA HEM sing 207 n n 
CBA CGA HEM sing 208 n n 
CBA HBA HEM sing 209 n n 
CBA HBAA HEM sing 210 n n 
CGA O1A HEM doub 211 n n 
CGA O2A HEM sing 212 n n 
C1B C2B HEM sing 213 n n 
C1B NB HEM sing 214 n n 
C2B C3B HEM doub 215 n n 
C2B CMB HEM sing 216 n n 
C3B C4B HEM sing 217 n n 
C3B CAB HEM sing 218 n n 
C4B NB HEM doub 219 n n 
CMB HMB HEM sing 220 n n 
CMB HMBA HEM sing 221 n n 
CMB HMBB HEM sing 222 n n 
CAB CBB HEM doub 223 n n 
CAB HAB HEM sing 224 n n 
CBB HBB HEM sing 225 n n 
CBB HBBA HEM sing 226 n n 
C1C C2C HEM sing 227 n y 
C1C NC HEM sing 228 n y 
C2C C3C HEM doub 229 n y 
C2C CMC HEM sing 230 n n 
C3C C4C HEM sing 231 n y 
C3C CAC HEM sing 232 n n 
C4C NC HEM sing 233 n y 
CMC HMC HEM sing 234 n n 
CMC HMCA HEM sing 235 n n 
CMC HMCB HEM sing 236 n n 
CAC CBC HEM doub 237 n n 
CAC HAC HEM sing 238 n n 
CBC HBC HEM sing 239 n n 
CBC HBCA HEM sing 240 n n 
C1D C2D HEM sing 241 n n 
C1D ND HEM doub 242 n n 
C2D C3D HEM doub 243 n n 
C2D CMD HEM sing 244 n n 
C3D C4D HEM sing 245 n n 
C3D CAD HEM sing 246 n n 
C4D ND HEM sing 247 n n 
CMD HMD HEM sing 248 n n 
CMD HMDA HEM sing 249 n n 
CMD HMDB HEM sing 250 n n 
CAD CBD HEM sing 251 n n 
CAD HAD HEM sing 252 n n 
CAD HADA HEM sing 253 n n 
CBD CGD HEM sing 254 n n 
CBD HBD HEM sing 255 n n 
CBD HBDA HEM sing 256 n n 
CGD O1D HEM doub 257 n n 
CGD O2D HEM sing 258 n n 
O2A H2A HEM sing 259 n n 
O2D H2D HEM sing 260 n n 
FE NA HEM sing 261 n n 
FE NB HEM sing 262 n n 
FE NC HEM sing 263 n n 
FE ND HEM sing 264 n n 
#
_atom_sites.entry_id                     6A4I 
_atom_sites.fract_transf_matrix[1][1]    0.006398 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.006939 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.011236 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 HEM A 1 401 401 HEM HEM . 
F 3 9R9 A 1 402 1 9R9 DRG . 
G 4 TRP A 1 403 5 TRP LTP . 
H 5 CIT A 1 404 8 CIT CIT . 
I 2 HEM B 1 401 401 HEM HEM . 
J 3 9R9 B 1 402 2 9R9 DRG . 
K 4 TRP B 1 403 6 TRP LTP . 
L 2 HEM C 1 401 401 HEM HEM . 
M 3 9R9 C 1 402 3 9R9 DRG . 
N 2 HEM D 1 401 401 HEM HEM . 
O 3 9R9 D 1 402 4 9R9 DRG . 
P 4 TRP D 1 403 7 TRP LTP . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C CHA HEM . . . L 2 39.459 148.905 11.586 1 85.44 ? CHA HEM 401 C 1 
HETATM 2 C CHB HEM . . . L 2 36.524 148.46 15.414 1 86.49 ? CHB HEM 401 C 1 
HETATM 3 C CHC HEM . . . L 2 37.705 143.77 15.815 1 70.76 ? CHC HEM 401 C 1 
HETATM 4 C CHD HEM . . . L 2 41.429 144.685 12.931 1 77.01 ? CHD HEM 401 C 1 
HETATM 5 C C1A HEM . . . L 2 38.474 149.152 12.516 1 88.28 ? C1A HEM 401 C 1 
HETATM 6 C C2A HEM . . . L 2 37.589 150.279 12.541 1 92.4 ? C2A HEM 401 C 1 
HETATM 7 C C3A HEM . . . L 2 36.762 150.132 13.638 1 90.92 ? C3A HEM 401 C 1 
HETATM 8 C C4A HEM . . . L 2 37.142 148.942 14.285 1 89.1 ? C4A HEM 401 C 1 
HETATM 9 C CMA HEM . . . L 2 35.652 151.028 14.108 1 90.52 ? CMA HEM 401 C 1 
HETATM 10 C CAA HEM . . . L 2 37.534 151.416 11.539 1 97.01 ? CAA HEM 401 C 1 
HETATM 11 C CBA HEM . . . L 2 38.718 152.355 11.689 1 103.4 ? CBA HEM 401 C 1 
HETATM 12 C CGA HEM . . . L 2 38.675 153.045 13.033 1 109.46 ? CGA HEM 401 C 1 
HETATM 13 O O1A HEM . . . L 2 39.596 152.777 13.848 1 106.89 ? O1A HEM 401 C 1 
HETATM 14 O O2A HEM . . . L 2 37.743 153.864 13.323 1 111.79 ? O2A HEM 401 C 1 
HETATM 15 C C1B HEM . . . L 2 36.556 147.113 15.823 1 81.51 ? C1B HEM 401 C 1 
HETATM 16 C C2B HEM . . . L 2 35.698 146.566 16.818 1 79.63 ? C2B HEM 401 C 1 
HETATM 17 C C3B HEM . . . L 2 36.03 145.233 16.954 1 77.22 ? C3B HEM 401 C 1 
HETATM 18 C C4B HEM . . . L 2 37.123 145.012 16.001 1 75.04 ? C4B HEM 401 C 1 
HETATM 19 C CMB HEM . . . L 2 34.65 147.364 17.557 1 80.56 ? CMB HEM 401 C 1 
HETATM 20 C CAB HEM . . . L 2 35.477 144.183 17.849 1 75.48 ? CAB HEM 401 C 1 
HETATM 21 C CBB HEM . . . L 2 35.249 144.419 19.14 1 76.91 ? CBB HEM 401 C 1 
HETATM 22 C C1C HEM . . . L 2 38.811 143.626 15.023 1 71.27 ? C1C HEM 401 C 1 
HETATM 23 C C2C HEM . . . L 2 39.498 142.45 14.934 1 71.44 ? C2C HEM 401 C 1 
HETATM 24 C C3C HEM . . . L 2 40.616 142.671 14.109 1 74.55 ? C3C HEM 401 C 1 
HETATM 25 C C4C HEM . . . L 2 40.572 144.045 13.737 1 73.99 ? C4C HEM 401 C 1 
HETATM 26 C CMC HEM . . . L 2 39.084 141.209 15.636 1 70.13 ? CMC HEM 401 C 1 
HETATM 27 C CAC HEM . . . L 2 41.61 141.652 13.714 1 72.22 ? CAC HEM 401 C 1 
HETATM 28 C CBC HEM . . . L 2 42.897 141.933 13.699 1 74.3 ? CBC HEM 401 C 1 
HETATM 29 C C1D HEM . . . L 2 41.124 145.888 12.306 1 77.55 ? C1D HEM 401 C 1 
HETATM 30 C C2D HEM . . . L 2 41.952 146.373 11.193 1 80.31 ? C2D HEM 401 C 1 
HETATM 31 C C3D HEM . . . L 2 41.416 147.54 10.822 1 85.01 ? C3D HEM 401 C 1 
HETATM 32 C C4D HEM . . . L 2 40.256 147.759 11.71 1 82.75 ? C4D HEM 401 C 1 
HETATM 33 C CMD HEM . . . L 2 43.16 145.722 10.568 1 78.47 ? CMD HEM 401 C 1 
HETATM 34 C CAD HEM . . . L 2 41.897 148.408 9.682 1 88.59 ? CAD HEM 401 C 1 
HETATM 35 C CBD HEM . . . L 2 41.007 147.917 8.536 1 90.21 ? CBD HEM 401 C 1 
HETATM 36 C CGD HEM . . . L 2 40.902 148.898 7.393 1 99.78 ? CGD HEM 401 C 1 
HETATM 37 O O1D HEM . . . L 2 39.951 148.766 6.557 1 99.32 ? O1D HEM 401 C 1 
HETATM 38 O O2D HEM . . . L 2 41.768 149.817 7.265 1 105.02 ? O2D HEM 401 C 1 
HETATM 39 N NA HEM . . . L 2 38.169 148.331 13.594 1 85.59 ? NA HEM 401 C 1 
HETATM 40 N NB HEM . . . L 2 37.363 146.174 15.376 1 77.99 ? NB HEM 401 C 1 
HETATM 41 N NC HEM . . . L 2 39.482 144.578 14.293 1 72.96 ? NC HEM 401 C 1 
HETATM 42 N ND HEM . . . L 2 40.141 146.734 12.588 1 78.68 ? ND HEM 401 C 1 
HETATM 43 FE FE HEM . . . L 2 38.818 146.481 13.91 1 78.52 ? FE HEM 401 C 1 
#
_model_server_stats.io_time_ms              27 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    27 
_model_server_stats.query_time_ms           270 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           43 
#