data_6A4I # _model_server_result.job_id LiHX7sRHqodF5RPbtqNNyQ _model_server_result.datetime_utc '2025-02-28 01:03:32' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6a4i # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":404}' # _entry.id 6A4I # _exptl.entry_id 6A4I _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 192.124 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CITRIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6A4I _cell.length_a 156.308 _cell.length_b 144.106 _cell.length_c 89.002 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6A4I _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id H _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 331 A HIS 328 1_555 E FE HEM . A HEM 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.897 ? metalc ? metalc2 E FE HEM . A HEM 401 1_555 F NAH 9R9 . A 9R9 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.096 ? metalc ? metalc3 B NE2 HIS 331 B HIS 328 1_555 I FE HEM . B HEM 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.874 ? metalc ? metalc4 I FE HEM . B HEM 401 1_555 J NAH 9R9 . B 9R9 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.054 ? metalc ? metalc5 C NE2 HIS 331 C HIS 328 1_555 L FE HEM . C HEM 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.963 ? metalc ? metalc6 L FE HEM . C HEM 401 1_555 M NAH 9R9 . C 9R9 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.083 ? metalc ? metalc7 D NE2 HIS 331 D HIS 328 1_555 N FE HEM . D HEM 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.1 ? metalc ? metalc8 N FE HEM . D HEM 401 1_555 O NAH 9R9 . D 9R9 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.073 ? # _chem_comp.formula 'C6 H8 O7' _chem_comp.formula_weight 192.124 _chem_comp.id CIT _chem_comp.mon_nstd_flag . _chem_comp.name 'CITRIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 CIT doub 104 n n C1 O2 CIT sing 105 n n C1 C2 CIT sing 106 n n O2 HO2 CIT sing 107 n n C2 C3 CIT sing 108 n n C2 H21 CIT sing 109 n n C2 H22 CIT sing 110 n n C3 O7 CIT sing 111 n n C3 C4 CIT sing 112 n n C3 C6 CIT sing 113 n n O7 HO7 CIT sing 114 n n C4 C5 CIT sing 115 n n C4 H41 CIT sing 116 n n C4 H42 CIT sing 117 n n C5 O3 CIT doub 118 n n C5 O4 CIT sing 119 n n O4 HO4 CIT sing 120 n n C6 O5 CIT doub 121 n n C6 O6 CIT sing 122 n n O6 HO6 CIT sing 123 n n # _atom_sites.entry_id 6A4I _atom_sites.fract_transf_matrix[1][1] 0.006398 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006939 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011236 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 HEM A 1 401 401 HEM HEM . F 3 9R9 A 1 402 1 9R9 DRG . G 4 TRP A 1 403 5 TRP LTP . H 5 CIT A 1 404 8 CIT CIT . I 2 HEM B 1 401 401 HEM HEM . J 3 9R9 B 1 402 2 9R9 DRG . K 4 TRP B 1 403 6 TRP LTP . L 2 HEM C 1 401 401 HEM HEM . M 3 9R9 C 1 402 3 9R9 DRG . N 2 HEM D 1 401 401 HEM HEM . O 3 9R9 D 1 402 4 9R9 DRG . P 4 TRP D 1 403 7 TRP LTP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 CIT . . . H 5 3.238 120.513 18.515 1 135.16 ? C1 CIT 404 A 1 HETATM 2 O O1 CIT . . . H 5 3.546 119.799 17.539 1 125.25 ? O1 CIT 404 A 1 HETATM 3 O O2 CIT . . . H 5 2.173 120.357 19.16 1 140.57 ? O2 CIT 404 A 1 HETATM 4 C C2 CIT . . . H 5 4.201 121.624 18.885 1 130.89 ? C2 CIT 404 A 1 HETATM 5 C C3 CIT . . . H 5 4.742 121.658 20.335 1 122.22 ? C3 CIT 404 A 1 HETATM 6 O O7 CIT . . . H 5 3.738 121.243 21.287 1 117.01 ? O7 CIT 404 A 1 HETATM 7 C C4 CIT . . . H 5 6.077 120.87 20.481 1 119.1 ? C4 CIT 404 A 1 HETATM 8 C C5 CIT . . . H 5 6.141 119.468 21.116 1 127.26 ? C5 CIT 404 A 1 HETATM 9 O O3 CIT . . . H 5 6.209 118.428 20.384 1 90.68 ? O3 CIT 404 A 1 HETATM 10 O O4 CIT . . . H 5 6.176 119.389 22.377 1 129.87 ? O4 CIT 404 A 1 HETATM 11 C C6 CIT . . . H 5 5.016 123.125 20.596 1 115.59 ? C6 CIT 404 A 1 HETATM 12 O O5 CIT . . . H 5 5.592 123.805 19.706 1 92.12 ? O5 CIT 404 A 1 HETATM 13 O O6 CIT . . . H 5 4.636 123.619 21.689 1 121.56 ? O6 CIT 404 A 1 # _model_server_stats.io_time_ms 28 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 27 _model_server_stats.query_time_ms 291 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 13 #