data_6A4W # _model_server_result.job_id Fpl-1qw14ywVn6zu3hDuNg _model_server_result.datetime_utc '2024-11-12 20:39:22' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6a4w # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":303}' # _entry.id 6A4W # _exptl.entry_id 6A4W _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 3 _entity.src_method nat _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6A4W _cell.length_a 118.154 _cell.length_b 118.154 _cell.length_c 90.906 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6A4W _symmetry.cell_setting ? _symmetry.Int_Tables_number 169 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 D NA NA . A NA 302 1_555 I O HOH . A HOH 431 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.404 ? metalc ? metalc2 B OE2 GLU 138 B GLU 118 1_555 H NA NA . B NA 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.011 ? metalc ? metalc3 H NA NA . B NA 303 1_555 J O HOH . B HOH 425 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.545 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 6A4W _atom_sites.fract_transf_matrix[1][1] 0.008464 _atom_sites.fract_transf_matrix[1][2] 0.004886 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009773 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NA A 1 301 68 NA NA . D 2 NA A 1 302 69 NA NA . E 3 GOL A 1 303 203 GOL GOL . F 4 SO4 B 1 301 77 SO4 SO4 . G 4 SO4 B 1 302 78 SO4 SO4 . H 2 NA B 1 303 70 NA NA . I 5 HOH A 1 401 51 HOH HOH . I 5 HOH A 2 402 41 HOH HOH . I 5 HOH A 3 403 66 HOH HOH . I 5 HOH A 4 404 14 HOH HOH . I 5 HOH A 5 405 46 HOH HOH . I 5 HOH A 6 406 10 HOH HOH . I 5 HOH A 7 407 15 HOH HOH . I 5 HOH A 8 408 25 HOH HOH . I 5 HOH A 9 409 59 HOH HOH . I 5 HOH A 10 410 11 HOH HOH . I 5 HOH A 11 411 18 HOH HOH . I 5 HOH A 12 412 42 HOH HOH . I 5 HOH A 13 413 27 HOH HOH . I 5 HOH A 14 414 33 HOH HOH . I 5 HOH A 15 415 58 HOH HOH . I 5 HOH A 16 416 67 HOH HOH . I 5 HOH A 17 417 43 HOH HOH . I 5 HOH A 18 418 17 HOH HOH . I 5 HOH A 19 419 5 HOH HOH . I 5 HOH A 20 420 56 HOH HOH . I 5 HOH A 21 421 12 HOH HOH . I 5 HOH A 22 422 52 HOH HOH . I 5 HOH A 23 423 40 HOH HOH . I 5 HOH A 24 424 19 HOH HOH . I 5 HOH A 25 425 21 HOH HOH . I 5 HOH A 26 426 48 HOH HOH . I 5 HOH A 27 427 32 HOH HOH . I 5 HOH A 28 428 34 HOH HOH . I 5 HOH A 29 429 23 HOH HOH . I 5 HOH A 30 430 63 HOH HOH . I 5 HOH A 31 431 47 HOH HOH . I 5 HOH A 32 432 60 HOH HOH . I 5 HOH A 33 433 20 HOH HOH . J 5 HOH B 1 401 62 HOH HOH . J 5 HOH B 2 402 1 HOH HOH . J 5 HOH B 3 403 24 HOH HOH . J 5 HOH B 4 404 49 HOH HOH . J 5 HOH B 5 405 8 HOH HOH . J 5 HOH B 6 406 37 HOH HOH . J 5 HOH B 7 407 29 HOH HOH . J 5 HOH B 8 408 7 HOH HOH . J 5 HOH B 9 409 36 HOH HOH . J 5 HOH B 10 410 9 HOH HOH . J 5 HOH B 11 411 6 HOH HOH . J 5 HOH B 12 412 65 HOH HOH . J 5 HOH B 13 413 13 HOH HOH . J 5 HOH B 14 414 16 HOH HOH . J 5 HOH B 15 415 28 HOH HOH . J 5 HOH B 16 416 44 HOH HOH . J 5 HOH B 17 417 45 HOH HOH . J 5 HOH B 18 418 4 HOH HOH . J 5 HOH B 19 419 31 HOH HOH . J 5 HOH B 20 420 57 HOH HOH . J 5 HOH B 21 421 26 HOH HOH . J 5 HOH B 22 422 22 HOH HOH . J 5 HOH B 23 423 64 HOH HOH . J 5 HOH B 24 424 35 HOH HOH . J 5 HOH B 25 425 54 HOH HOH . J 5 HOH B 26 426 55 HOH HOH . J 5 HOH B 27 427 2 HOH HOH . J 5 HOH B 28 428 38 HOH HOH . J 5 HOH B 29 429 53 HOH HOH . J 5 HOH B 30 430 50 HOH HOH . J 5 HOH B 31 431 3 HOH HOH . J 5 HOH B 32 432 61 HOH HOH . J 5 HOH B 33 433 39 HOH HOH . J 5 HOH B 34 434 30 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . E 3 63.357 -45.329 -2.106 1 74.88 ? C1 GOL 303 A 1 HETATM 2 O O1 GOL . . . E 3 62.591 -46.511 -2.093 1 76.56 ? O1 GOL 303 A 1 HETATM 3 C C2 GOL . . . E 3 64.173 -45.211 -0.824 1 83.54 ? C2 GOL 303 A 1 HETATM 4 O O2 GOL . . . E 3 64.392 -43.847 -0.525 1 71.5 ? O2 GOL 303 A 1 HETATM 5 C C3 GOL . . . E 3 63.416 -45.881 0.317 1 83.28 ? C3 GOL 303 A 1 HETATM 6 O O3 GOL . . . E 3 63.245 -47.253 0.039 1 70.87 ? O3 GOL 303 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 220 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 6 #