data_6A57 # _model_server_result.job_id VnKiZNrjGmwIx7YuBxAYDw _model_server_result.datetime_utc '2024-12-26 16:52:23' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6a57 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":101}' # _entry.id 6A57 # _exptl.entry_id 6A57 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6A57 _cell.length_a 96.087 _cell.length_b 96.087 _cell.length_c 73.905 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6A57 _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 5_555 x-y,-y,-z+1/3 1 0 0 0 -1 0 0 0 -1 0 0 24.635 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 H N N ? 5 I N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 25 A CYS 1245 1_555 D ZN ZN . A ZN 1401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.739 ? metalc ? metalc2 A SG CYS 30 A CYS 1250 1_555 D ZN ZN . A ZN 1401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? metalc ? metalc3 A NE2 HIS 43 A HIS 1263 1_555 D ZN ZN . A ZN 1401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.951 ? metalc ? metalc4 A SG CYS 48 A CYS 1268 1_555 E ZN ZN . A ZN 1402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.315 ? metalc ? metalc5 A SG CYS 53 A CYS 1273 1_555 E ZN ZN . A ZN 1402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.279 ? metalc ? metalc6 A NE2 HIS 60 A HIS 1280 1_555 D ZN ZN . A ZN 1401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.1 ? metalc ? metalc7 A NE2 HIS 66 A HIS 1286 1_555 E ZN ZN . A ZN 1402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? metalc ? metalc8 A NE2 HIS 70 A HIS 1290 1_555 E ZN ZN . A ZN 1402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.997 ? metalc ? metalc9 A SG CYS 78 A CYS 1298 1_555 F ZN ZN . A ZN 1403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.205 ? metalc ? metalc10 A SG CYS 83 A CYS 1303 1_555 F ZN ZN . A ZN 1403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.196 ? metalc ? metalc11 A NE2 HIS 96 A HIS 1316 1_555 F ZN ZN . A ZN 1403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.994 ? metalc ? metalc12 A NE2 HIS 100 A HIS 1320 1_555 F ZN ZN . A ZN 1403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.057 ? metalc ? metalc13 A SG CYS 108 A CYS 1328 1_555 G ZN ZN . A ZN 1404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.329 ? metalc ? metalc14 A SG CYS 113 A CYS 1333 1_555 G ZN ZN . A ZN 1404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.277 ? metalc ? metalc15 A NE2 HIS 126 A HIS 1346 1_555 G ZN ZN . A ZN 1404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? metalc ? metalc16 A ND1 HIS 132 A HIS 1352 1_555 G ZN ZN . A ZN 1404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.102 ? hydrog WATSON-CRICK hydrog1 B N3 DT 2 B DT 2 1_555 C N1 DA 16 C DA 36 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog2 B O4 DT 2 B DT 2 1_555 C N6 DA 16 C DA 36 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog3 B N3 DT 3 B DT 3 1_555 C N1 DA 15 C DA 35 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog4 B O4 DT 3 B DT 3 1_555 C N6 DA 15 C DA 35 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog5 B N3 DT 4 B DT 4 1_555 C N1 DA 14 C DA 34 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog6 B O4 DT 4 B DT 4 1_555 C N6 DA 14 C DA 34 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog7 B N3 DC 5 B DC 5 1_555 C N1 DG 13 C DG 33 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog8 B N4 DC 5 B DC 5 1_555 C O6 DG 13 C DG 33 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog9 B O2 DC 5 B DC 5 1_555 C N2 DG 13 C DG 33 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog10 B N3 DT 6 B DT 6 1_555 C N1 DA 12 C DA 32 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog11 B O4 DT 6 B DT 6 1_555 C N6 DA 12 C DA 32 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog12 B N3 DC 7 B DC 7 1_555 C N1 DG 11 C DG 31 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog13 B N4 DC 7 B DC 7 1_555 C O6 DG 11 C DG 31 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog14 B O2 DC 7 B DC 7 1_555 C N2 DG 11 C DG 31 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog15 B N3 DT 8 B DT 8 1_555 C N1 DA 10 C DA 30 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog16 B O4 DT 8 B DT 8 1_555 C N6 DA 10 C DA 30 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog17 B N1 DG 9 B DG 9 1_555 C N3 DC 9 C DC 29 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog18 B N2 DG 9 B DG 9 1_555 C O2 DC 9 C DC 29 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog19 B O6 DG 9 B DG 9 1_555 C N4 DC 9 C DC 29 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog20 B N3 DT 10 B DT 10 1_555 C N1 DA 8 C DA 28 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog21 B O4 DT 10 B DT 10 1_555 C N6 DA 8 C DA 28 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog22 B N3 DT 11 B DT 11 1_555 C N1 DA 7 C DA 27 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog23 B O4 DT 11 B DT 11 1_555 C N6 DA 7 C DA 27 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog24 B N3 DT 12 B DT 12 1_555 C N1 DA 6 C DA 26 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog25 B O4 DT 12 B DT 12 1_555 C N6 DA 6 C DA 26 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog26 B N3 DT 13 B DT 13 1_555 C N1 DA 5 C DA 25 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog27 B O4 DT 13 B DT 13 1_555 C N6 DA 5 C DA 25 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog28 B N1 DG 14 B DG 14 1_555 C N3 DC 4 C DC 24 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog29 B N2 DG 14 B DG 14 1_555 C O2 DC 4 C DC 24 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog30 B O6 DG 14 B DG 14 1_555 C N4 DC 4 C DC 24 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog31 B N3 DT 15 B DT 15 1_555 C N1 DA 3 C DA 23 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog32 B O4 DT 15 B DT 15 1_555 C N6 DA 3 C DA 23 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog33 B N3 DC 16 B DC 16 1_555 C N1 DG 2 C DG 22 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog34 B N4 DC 16 B DC 16 1_555 C O6 DG 2 C DG 22 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog35 B O2 DC 16 B DC 16 1_555 C N2 DG 2 C DG 22 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 278 n n C1 C2 GOL sing 279 n n C1 H11 GOL sing 280 n n C1 H12 GOL sing 281 n n O1 HO1 GOL sing 282 n n C2 O2 GOL sing 283 n n C2 C3 GOL sing 284 n n C2 H2 GOL sing 285 n n O2 HO2 GOL sing 286 n n C3 O3 GOL sing 287 n n C3 H31 GOL sing 288 n n C3 H32 GOL sing 289 n n O3 HO3 GOL sing 290 n n # _atom_sites.entry_id 6A57 _atom_sites.fract_transf_matrix[1][1] 0.010407 _atom_sites.fract_transf_matrix[1][2] 0.006009 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012017 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013531 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 ZN A 1 1401 1 ZN ZN . E 4 ZN A 1 1402 2 ZN ZN . F 4 ZN A 1 1403 3 ZN ZN . G 4 ZN A 1 1404 4 ZN ZN . H 5 GOL C 1 101 7 GOL GOL . I 5 GOL C 1 102 8 GOL GOL . J 6 HOH A 1 1501 80 HOH HOH . J 6 HOH A 2 1502 64 HOH HOH . J 6 HOH A 3 1503 20 HOH HOH . J 6 HOH A 4 1504 15 HOH HOH . J 6 HOH A 5 1505 52 HOH HOH . J 6 HOH A 6 1506 61 HOH HOH . J 6 HOH A 7 1507 28 HOH HOH . J 6 HOH A 8 1508 49 HOH HOH . J 6 HOH A 9 1509 66 HOH HOH . J 6 HOH A 10 1510 56 HOH HOH . J 6 HOH A 11 1511 46 HOH HOH . J 6 HOH A 12 1512 34 HOH HOH . J 6 HOH A 13 1513 71 HOH HOH . J 6 HOH A 14 1514 11 HOH HOH . J 6 HOH A 15 1515 70 HOH HOH . J 6 HOH A 16 1516 23 HOH HOH . J 6 HOH A 17 1517 48 HOH HOH . J 6 HOH A 18 1518 2 HOH HOH . J 6 HOH A 19 1519 19 HOH HOH . J 6 HOH A 20 1520 12 HOH HOH . J 6 HOH A 21 1521 6 HOH HOH . J 6 HOH A 22 1522 24 HOH HOH . J 6 HOH A 23 1523 31 HOH HOH . J 6 HOH A 24 1524 72 HOH HOH . J 6 HOH A 25 1525 58 HOH HOH . J 6 HOH A 26 1526 60 HOH HOH . J 6 HOH A 27 1527 10 HOH HOH . J 6 HOH A 28 1528 22 HOH HOH . J 6 HOH A 29 1529 30 HOH HOH . J 6 HOH A 30 1530 37 HOH HOH . J 6 HOH A 31 1531 26 HOH HOH . J 6 HOH A 32 1532 77 HOH HOH . J 6 HOH A 33 1533 68 HOH HOH . J 6 HOH A 34 1534 25 HOH HOH . J 6 HOH A 35 1535 53 HOH HOH . J 6 HOH A 36 1536 78 HOH HOH . J 6 HOH A 37 1537 43 HOH HOH . J 6 HOH A 38 1538 5 HOH HOH . J 6 HOH A 39 1539 33 HOH HOH . J 6 HOH A 40 1540 73 HOH HOH . J 6 HOH A 41 1541 67 HOH HOH . J 6 HOH A 42 1542 57 HOH HOH . J 6 HOH A 43 1543 21 HOH HOH . J 6 HOH A 44 1544 63 HOH HOH . J 6 HOH A 45 1545 51 HOH HOH . J 6 HOH A 46 1546 55 HOH HOH . K 6 HOH B 1 101 35 HOH HOH . K 6 HOH B 2 102 69 HOH HOH . K 6 HOH B 3 103 4 HOH HOH . K 6 HOH B 4 104 45 HOH HOH . K 6 HOH B 5 105 9 HOH HOH . K 6 HOH B 6 106 29 HOH HOH . K 6 HOH B 7 107 7 HOH HOH . K 6 HOH B 8 108 50 HOH HOH . K 6 HOH B 9 109 44 HOH HOH . K 6 HOH B 10 110 8 HOH HOH . K 6 HOH B 11 111 13 HOH HOH . K 6 HOH B 12 112 75 HOH HOH . K 6 HOH B 13 113 40 HOH HOH . K 6 HOH B 14 114 65 HOH HOH . K 6 HOH B 15 115 79 HOH HOH . K 6 HOH B 16 116 17 HOH HOH . K 6 HOH B 17 117 14 HOH HOH . L 6 HOH C 1 201 59 HOH HOH . L 6 HOH C 2 202 39 HOH HOH . L 6 HOH C 3 203 16 HOH HOH . L 6 HOH C 4 204 74 HOH HOH . L 6 HOH C 5 205 47 HOH HOH . L 6 HOH C 6 206 38 HOH HOH . L 6 HOH C 7 207 54 HOH HOH . L 6 HOH C 8 208 27 HOH HOH . L 6 HOH C 9 209 32 HOH HOH . L 6 HOH C 10 210 41 HOH HOH . L 6 HOH C 11 211 18 HOH HOH . L 6 HOH C 12 212 42 HOH HOH . L 6 HOH C 13 213 36 HOH HOH . L 6 HOH C 14 214 3 HOH HOH . L 6 HOH C 15 215 1 HOH HOH . L 6 HOH C 16 216 62 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . H 5 -41.553 -1.695 -1.105 1 35.1 ? C1 GOL 101 C 1 HETATM 2 O O1 GOL . . . H 5 -40.183 -2.117 -1.147 1 34.09 ? O1 GOL 101 C 1 HETATM 3 C C2 GOL . . . H 5 -42.427 -2.81 -0.509 1 34.91 ? C2 GOL 101 C 1 HETATM 4 O O2 GOL . . . H 5 -41.73 -3.371 0.595 1 33.15 ? O2 GOL 101 C 1 HETATM 5 C C3 GOL . . . H 5 -43.796 -2.302 -0.05 1 34.9 ? C3 GOL 101 C 1 HETATM 6 O O3 GOL . . . H 5 -44.112 -2.765 1.267 1 35.17 ? O3 GOL 101 C 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 20 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 331 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 6 #