data_6A5Z # _model_server_result.job_id ghA3m9xahmXhSkpRitEVCQ _model_server_result.datetime_utc '2024-11-23 07:21:24' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6a5z # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"L","auth_seq_id":501}' # _entry.id 6A5Z # _exptl.entry_id 6A5Z _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 300.435 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(9cis)-retinoic acid' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6A5Z _cell.length_a 89.53 _cell.length_b 96.13 _cell.length_c 114.24 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6A5Z _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? tetrameric 4 author_defined_assembly 1 ? tetrameric 4 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,E,F,I,J,M,N 1 1 C,D,G,H,K,L,O,P,Q 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 J N N ? 5 L N N # _chem_comp.formula 'C20 H28 O2' _chem_comp.formula_weight 300.435 _chem_comp.id 9CR _chem_comp.mon_nstd_flag . _chem_comp.name '(9cis)-retinoic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O1 C15 9CR doub 1 n n C15 C14 9CR sing 2 n n C15 O2 9CR sing 3 n n C14 C13 9CR doub 4 e n C13 C12 9CR sing 5 n n C13 C20 9CR sing 6 n n C12 C11 9CR doub 7 e n C11 C10 9CR sing 8 n n C18 C5 9CR sing 9 n n C10 C9 9CR doub 10 z n C9 C19 9CR sing 11 n n C9 C8 9CR sing 12 n n C8 C7 9CR doub 13 e n C5 C4 9CR sing 14 n n C5 C6 9CR doub 15 n n C4 C3 9CR sing 16 n n C7 C6 9CR sing 17 n n C6 C1 9CR sing 18 n n C3 C2 9CR sing 19 n n C1 C17 9CR sing 20 n n C1 C2 9CR sing 21 n n C1 C16 9CR sing 22 n n C2 H1 9CR sing 23 n n C2 H2 9CR sing 24 n n C3 H3 9CR sing 25 n n C3 H4 9CR sing 26 n n C4 H5 9CR sing 27 n n C4 H6 9CR sing 28 n n C7 H7 9CR sing 29 n n C8 H8 9CR sing 30 n n C10 H9 9CR sing 31 n n C11 H10 9CR sing 32 n n C12 H11 9CR sing 33 n n C14 H12 9CR sing 34 n n C16 H13 9CR sing 35 n n C16 H14 9CR sing 36 n n C16 H15 9CR sing 37 n n C17 H16 9CR sing 38 n n C17 H17 9CR sing 39 n n C17 H18 9CR sing 40 n n C18 H19 9CR sing 41 n n C18 H20 9CR sing 42 n n C18 H21 9CR sing 43 n n C19 H22 9CR sing 44 n n C19 H23 9CR sing 45 n n C19 H24 9CR sing 46 n n C20 H25 9CR sing 47 n n C20 H26 9CR sing 48 n n C20 H27 9CR sing 49 n n O2 H28 9CR sing 50 n n # _atom_sites.entry_id 6A5Z _atom_sites.fract_transf_matrix[1][1] 0.011169 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010403 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008754 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code I 4 9R3 A 1 501 2 9R3 hnc . J 5 9CR D 1 501 501 9CR 9CR . K 4 9R3 H 1 501 1 9R3 hnc . L 5 9CR L 1 501 501 9CR 9CR . M 6 HOH A 1 601 71 HOH HOH . M 6 HOH A 2 602 20 HOH HOH . N 6 HOH D 1 601 1 HOH HOH . O 6 HOH H 1 601 49 HOH HOH . O 6 HOH H 2 602 56 HOH HOH . O 6 HOH H 3 603 52 HOH HOH . O 6 HOH H 4 604 33 HOH HOH . O 6 HOH H 5 605 71 HOH HOH . O 6 HOH H 6 606 110 HOH HOH . O 6 HOH H 7 607 53 HOH HOH . O 6 HOH H 8 608 2 HOH HOH . P 6 HOH L 1 601 16 HOH HOH . P 6 HOH L 2 602 81 HOH HOH . P 6 HOH L 3 603 57 HOH HOH . P 6 HOH L 4 604 42 HOH HOH . P 6 HOH L 5 605 28 HOH HOH . Q 6 HOH I 1 701 22 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 9CR . . . L 5 14.025 9.311 -43.382 1 36.47 ? C1 9CR 501 L 1 HETATM 2 C C2 9CR . . . L 5 13.266 9.347 -44.709 1 38.07 ? C2 9CR 501 L 1 HETATM 3 C C3 9CR . . . L 5 13.93 10.244 -45.749 1 39.32 ? C3 9CR 501 L 1 HETATM 4 C C4 9CR . . . L 5 13.959 11.68 -45.228 1 38.84 ? C4 9CR 501 L 1 HETATM 5 C C5 9CR . . . L 5 14.599 11.778 -43.835 1 38.32 ? C5 9CR 501 L 1 HETATM 6 C C6 9CR . . . L 5 14.13 10.73 -42.791 1 35.7 ? C6 9CR 501 L 1 HETATM 7 C C7 9CR . . . L 5 15.018 10.713 -41.537 1 33.59 ? C7 9CR 501 L 1 HETATM 8 C C8 9CR . . . L 5 15.068 11.624 -40.639 1 31.49 ? C8 9CR 501 L 1 HETATM 9 C C9 9CR . . . L 5 15.205 12.505 -39.717 1 29.55 ? C9 9CR 501 L 1 HETATM 10 C C10 9CR . . . L 5 16.318 13.167 -39.564 1 29.46 ? C10 9CR 501 L 1 HETATM 11 C C11 9CR . . . L 5 17.495 13.535 -39.638 1 28.42 ? C11 9CR 501 L 1 HETATM 12 C C12 9CR . . . L 5 18.505 14.192 -39.921 1 28.16 ? C12 9CR 501 L 1 HETATM 13 C C13 9CR . . . L 5 19.588 14.707 -40.402 1 28.82 ? C13 9CR 501 L 1 HETATM 14 C C14 9CR . . . L 5 20.145 15.839 -39.913 1 30.41 ? C14 9CR 501 L 1 HETATM 15 C C15 9CR . . . L 5 21.349 16.556 -40.447 1 31 ? C15 9CR 501 L 1 HETATM 16 C C16 9CR . . . L 5 15.384 8.655 -43.675 1 36.9 ? C16 9CR 501 L 1 HETATM 17 C C17 9CR . . . L 5 13.214 8.446 -42.422 1 37.38 ? C17 9CR 501 L 1 HETATM 18 C C18 9CR . . . L 5 14.397 13.208 -43.34 1 38.78 ? C18 9CR 501 L 1 HETATM 19 C C19 9CR . . . L 5 14.038 12.773 -38.822 1 28.93 ? C19 9CR 501 L 1 HETATM 20 C C20 9CR . . . L 5 20.107 13.98 -41.598 1 29.48 ? C20 9CR 501 L 1 HETATM 21 O O1 9CR . . . L 5 22.034 16.119 -41.395 1 30.12 ? O1 9CR 501 L 1 HETATM 22 O O2 9CR . . . L 5 21.647 17.684 -39.964 1 31.23 ? O2 9CR 501 L 1 # _model_server_stats.io_time_ms 59 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 321 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 22 #