data_6A5Z # _model_server_result.job_id rx6jf1pEpUwg5AXmB1Ndwg _model_server_result.datetime_utc '2024-12-13 10:26:16' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6a5z # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":501}' # _entry.id 6A5Z # _exptl.entry_id 6A5Z _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 300.435 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(9cis)-retinoic acid' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6A5Z _cell.length_a 89.53 _cell.length_b 96.13 _cell.length_c 114.24 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6A5Z _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? tetrameric 4 author_defined_assembly 1 ? tetrameric 4 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,E,F,I,J,M,N 1 1 C,D,G,H,K,L,O,P,Q 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 J N N ? 5 L N N # _chem_comp.formula 'C20 H28 O2' _chem_comp.formula_weight 300.435 _chem_comp.id 9CR _chem_comp.mon_nstd_flag . _chem_comp.name '(9cis)-retinoic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O1 C15 9CR doub 1 n n C15 C14 9CR sing 2 n n C15 O2 9CR sing 3 n n C14 C13 9CR doub 4 e n C13 C12 9CR sing 5 n n C13 C20 9CR sing 6 n n C12 C11 9CR doub 7 e n C11 C10 9CR sing 8 n n C18 C5 9CR sing 9 n n C10 C9 9CR doub 10 z n C9 C19 9CR sing 11 n n C9 C8 9CR sing 12 n n C8 C7 9CR doub 13 e n C5 C4 9CR sing 14 n n C5 C6 9CR doub 15 n n C4 C3 9CR sing 16 n n C7 C6 9CR sing 17 n n C6 C1 9CR sing 18 n n C3 C2 9CR sing 19 n n C1 C17 9CR sing 20 n n C1 C2 9CR sing 21 n n C1 C16 9CR sing 22 n n C2 H1 9CR sing 23 n n C2 H2 9CR sing 24 n n C3 H3 9CR sing 25 n n C3 H4 9CR sing 26 n n C4 H5 9CR sing 27 n n C4 H6 9CR sing 28 n n C7 H7 9CR sing 29 n n C8 H8 9CR sing 30 n n C10 H9 9CR sing 31 n n C11 H10 9CR sing 32 n n C12 H11 9CR sing 33 n n C14 H12 9CR sing 34 n n C16 H13 9CR sing 35 n n C16 H14 9CR sing 36 n n C16 H15 9CR sing 37 n n C17 H16 9CR sing 38 n n C17 H17 9CR sing 39 n n C17 H18 9CR sing 40 n n C18 H19 9CR sing 41 n n C18 H20 9CR sing 42 n n C18 H21 9CR sing 43 n n C19 H22 9CR sing 44 n n C19 H23 9CR sing 45 n n C19 H24 9CR sing 46 n n C20 H25 9CR sing 47 n n C20 H26 9CR sing 48 n n C20 H27 9CR sing 49 n n O2 H28 9CR sing 50 n n # _atom_sites.entry_id 6A5Z _atom_sites.fract_transf_matrix[1][1] 0.011169 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010403 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008754 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code I 4 9R3 A 1 501 2 9R3 hnc . J 5 9CR D 1 501 501 9CR 9CR . K 4 9R3 H 1 501 1 9R3 hnc . L 5 9CR L 1 501 501 9CR 9CR . M 6 HOH A 1 601 71 HOH HOH . M 6 HOH A 2 602 20 HOH HOH . N 6 HOH D 1 601 1 HOH HOH . O 6 HOH H 1 601 49 HOH HOH . O 6 HOH H 2 602 56 HOH HOH . O 6 HOH H 3 603 52 HOH HOH . O 6 HOH H 4 604 33 HOH HOH . O 6 HOH H 5 605 71 HOH HOH . O 6 HOH H 6 606 110 HOH HOH . O 6 HOH H 7 607 53 HOH HOH . O 6 HOH H 8 608 2 HOH HOH . P 6 HOH L 1 601 16 HOH HOH . P 6 HOH L 2 602 81 HOH HOH . P 6 HOH L 3 603 57 HOH HOH . P 6 HOH L 4 604 42 HOH HOH . P 6 HOH L 5 605 28 HOH HOH . Q 6 HOH I 1 701 22 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 9CR . . . J 5 -12.797 38.871 14.415 1 36.28 ? C1 9CR 501 D 1 HETATM 2 C C2 9CR . . . J 5 -12.966 38.19 15.782 1 35.91 ? C2 9CR 501 D 1 HETATM 3 C C3 9CR . . . J 5 -12.291 38.961 16.914 1 35.39 ? C3 9CR 501 D 1 HETATM 4 C C4 9CR . . . J 5 -10.79 38.989 16.664 1 35.99 ? C4 9CR 501 D 1 HETATM 5 C C5 9CR . . . J 5 -10.454 39.574 15.29 1 36.91 ? C5 9CR 501 D 1 HETATM 6 C C6 9CR . . . J 5 -11.305 39.077 14.103 1 36.48 ? C6 9CR 501 D 1 HETATM 7 C C7 9CR . . . J 5 -11.18 40.048 12.939 1 34.9 ? C7 9CR 501 D 1 HETATM 8 C C8 9CR . . . J 5 -10.318 40.029 12.034 1 31.63 ? C8 9CR 501 D 1 HETATM 9 C C9 9CR . . . J 5 -9.557 40.175 11.074 1 30.74 ? C9 9CR 501 D 1 HETATM 10 C C10 9CR . . . J 5 -9.15 41.366 10.92 1 31.2 ? C10 9CR 501 D 1 HETATM 11 C C11 9CR . . . J 5 -8.729 42.507 10.943 1 31.08 ? C11 9CR 501 D 1 HETATM 12 C C12 9CR . . . J 5 -8.323 43.614 11.203 1 31.35 ? C12 9CR 501 D 1 HETATM 13 C C13 9CR . . . J 5 -7.816 44.698 11.65 1 32.71 ? C13 9CR 501 D 1 HETATM 14 C C14 9CR . . . J 5 -6.666 45.248 11.183 1 33.61 ? C14 9CR 501 D 1 HETATM 15 C C15 9CR . . . J 5 -5.959 46.485 11.679 1 33.3 ? C15 9CR 501 D 1 HETATM 16 C C16 9CR . . . J 5 -13.571 40.195 14.485 1 37.18 ? C16 9CR 501 D 1 HETATM 17 C C17 9CR . . . J 5 -13.37 37.947 13.336 1 36.09 ? C17 9CR 501 D 1 HETATM 18 C C18 9CR . . . J 5 -8.97 39.368 14.997 1 37.16 ? C18 9CR 501 D 1 HETATM 19 C C19 9CR . . . J 5 -9.281 39.019 10.164 1 31.47 ? C19 9CR 501 D 1 HETATM 20 C C20 9CR . . . J 5 -8.591 45.286 12.783 1 34.29 ? C20 9CR 501 D 1 HETATM 21 O O1 9CR . . . J 5 -4.839 46.77 11.217 1 35.03 ? O1 9CR 501 D 1 HETATM 22 O O2 9CR . . . J 5 -6.35 47.244 12.573 1 32.72 ? O2 9CR 501 D 1 # _model_server_stats.io_time_ms 60 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 14 _model_server_stats.query_time_ms 325 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 22 #