data_6A6A
#
_model_server_result.job_id            RwgU3Lhc4kyd5-QM1b7u2A 
_model_server_result.datetime_utc      '2024-11-25 22:25:57' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6a6a 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"L","auth_seq_id":303}' 
#
_entry.id    6A6A 
#
_exptl.entry_id    6A6A 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          109.08 
_cell.angle_gamma         90 
_cell.entry_id            6A6A 
_cell.length_a            85.368 
_cell.length_b            40.83 
_cell.length_c            114.672 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6A6A 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 D N N 
? 3 E N N 
? 3 K N N 
? 3 L N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A NE2 HIS 137 A HIS 188 1_555 G ZN ZN . A ZN 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? 
metalc ? metalc2 A OD1 ASP 144 A ASP 195 1_555 G ZN ZN . A ZN 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.016 ? 
metalc ? metalc3 A OD2 ASP 144 A ASP 195 1_555 G ZN ZN . A ZN 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.632 ? 
metalc ? metalc4 A ND1 HIS 190 A HIS 241 1_555 G ZN ZN . A ZN 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.954 ? 
metalc ? metalc5 F O ACT . A ACT 304 1_555 G ZN ZN . A ZN 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.162 ? 
metalc ? metalc6 F OXT ACT . A ACT 304 1_555 G ZN ZN . A ZN 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.164 ? 
metalc ? metalc7 B NE2 HIS 137 B HIS 188 1_555 N ZN ZN . B ZN 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.015 ? 
metalc ? metalc8 B OD1 ASP 144 B ASP 195 1_555 N ZN ZN . B ZN 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.067 ? 
metalc ? metalc9 B ND1 HIS 190 B HIS 241 1_555 N ZN ZN . B ZN 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.907 ? 
metalc ? metalc10 M O ACT . B ACT 304 1_555 N ZN ZN . B ZN 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.482 ? 
metalc ? metalc11 M OXT ACT . B ACT 304 1_555 N ZN ZN . B ZN 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.193 ? 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 147 n n 
C1 C2 GOL sing 148 n n 
C1 H11 GOL sing 149 n n 
C1 H12 GOL sing 150 n n 
O1 HO1 GOL sing 151 n n 
C2 O2 GOL sing 152 n n 
C2 C3 GOL sing 153 n n 
C2 H2 GOL sing 154 n n 
O2 HO2 GOL sing 155 n n 
C3 O3 GOL sing 156 n n 
C3 H31 GOL sing 157 n n 
C3 H32 GOL sing 158 n n 
O3 HO3 GOL sing 159 n n 
#
_atom_sites.entry_id                     6A6A 
_atom_sites.fract_transf_matrix[1][1]    0.011714 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.004052 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.024492 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.009227 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 DAL A 1 301 1 DAL DAL . 
D 3 GOL A 1 302 1 GOL GOL . 
E 3 GOL A 1 303 4 GOL GOL . 
F 4 ACT A 1 304 1 ACT ACT . 
G 5 ZN A 1 305 1 ZN ZN . 
H 6 PGE A 1 306 2 PGE PGE . 
I 6 PGE A 1 307 3 PGE PGE . 
J 2 DAL B 1 301 1 DAL DAL . 
K 3 GOL B 1 302 2 GOL GOL . 
L 3 GOL B 1 303 3 GOL GOL . 
M 4 ACT B 1 304 2 ACT ACT . 
N 5 ZN B 1 305 2 ZN ZN . 
O 6 PGE B 1 306 1 PGE PGE . 
P 6 PGE B 1 307 4 PGE PGE . 
Q 7 HOH A 1 401 1 HOH HOH . 
Q 7 HOH A 2 402 17 HOH HOH . 
Q 7 HOH A 3 403 5 HOH HOH . 
Q 7 HOH A 4 404 21 HOH HOH . 
Q 7 HOH A 5 405 2 HOH HOH . 
Q 7 HOH A 6 406 19 HOH HOH . 
Q 7 HOH A 7 407 3 HOH HOH . 
Q 7 HOH A 8 408 6 HOH HOH . 
Q 7 HOH A 9 409 22 HOH HOH . 
Q 7 HOH A 10 410 12 HOH HOH . 
R 7 HOH B 1 401 11 HOH HOH . 
R 7 HOH B 2 402 18 HOH HOH . 
R 7 HOH B 3 403 14 HOH HOH . 
R 7 HOH B 4 404 4 HOH HOH . 
R 7 HOH B 5 405 8 HOH HOH . 
R 7 HOH B 6 406 9 HOH HOH . 
R 7 HOH B 7 407 15 HOH HOH . 
R 7 HOH B 8 408 16 HOH HOH . 
R 7 HOH B 9 409 7 HOH HOH . 
R 7 HOH B 10 410 13 HOH HOH . 
R 7 HOH B 11 411 10 HOH HOH . 
R 7 HOH B 12 412 20 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . L 3 -14.6 -3.571 10.523 1 49.29 ? C1 GOL 303 B 1 
HETATM 2 O O1 GOL . . . L 3 -13.575 -2.736 10.007 1 52.75 ? O1 GOL 303 B 1 
HETATM 3 C C2 GOL . . . L 3 -13.993 -4.931 10.418 1 48.22 ? C2 GOL 303 B 1 
HETATM 4 O O2 GOL . . . L 3 -13.167 -5.063 11.563 1 46.76 ? O2 GOL 303 B 1 
HETATM 5 C C3 GOL . . . L 3 -15.112 -5.942 10.384 1 49.11 ? C3 GOL 303 B 1 
HETATM 6 O O3 GOL . . . L 3 -14.578 -7.26 10.59 1 51.41 ? O3 GOL 303 B 1 
#
_model_server_stats.io_time_ms              10 
_model_server_stats.parse_time_ms           21 
_model_server_stats.create_model_time_ms    13 
_model_server_stats.query_time_ms           325 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           6 
#